RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 NOS1P29475 1434 aa19.61■□□□□ 0.73
CLSTN3-208ENST00000538933 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.61■□□□□ 0.73
CLSTN3-208ENST00000538933 AHDC1Q5TGY3 1603 aaPredicted RBP19.61■□□□□ 0.73
CLSTN3-208ENST00000538933 ADGRB3O60242 1522 aa19.61■□□□□ 0.73
CLSTN3-208ENST00000538933 RXRBP28702 533 aa19.6■□□□□ 0.73
CLSTN3-208ENST00000538933 MEX3CQ5U5Q3 659 aaKnown RBP19.59■□□□□ 0.73
CLSTN3-208ENST00000538933 RRP7BPQ9NSQ0 103 aa19.59■□□□□ 0.73
CLSTN3-208ENST00000538933 NCOA3Q9Y6Q9 1424 aa19.59■□□□□ 0.73
CLSTN3-208ENST00000538933 CROCC2H7BZ55 1655 aa19.59■□□□□ 0.73
CLSTN3-208ENST00000538933 MYO5BQ9ULV0 1848 aa19.58■□□□□ 0.73
CLSTN3-208ENST00000538933 ZFYVE9O95405 1425 aa19.58■□□□□ 0.72
CLSTN3-208ENST00000538933 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.57■□□□□ 0.72
CLSTN3-208ENST00000538933 ABCC5O15440 1437 aa19.57■□□□□ 0.72
CLSTN3-208ENST00000538933 DIP2AQ14689 1571 aa19.57■□□□□ 0.72
CLSTN3-208ENST00000538933 KANK4Q5T7N3 995 aaPredicted RBP19.56■□□□□ 0.72
CLSTN3-208ENST00000538933 KANK1Q14678 1352 aa19.56■□□□□ 0.72
CLSTN3-208ENST00000538933 PLEKHG1Q9ULL1 1385 aa19.55■□□□□ 0.72
CLSTN3-208ENST00000538933 SLC52A1Q9NWF4 448 aa19.54■□□□□ 0.72
CLSTN3-208ENST00000538933 BCANQ96GW7 911 aa19.53■□□□□ 0.72
CLSTN3-208ENST00000538933 TBX22Q9Y458 520 aa19.53■□□□□ 0.72
CLSTN3-208ENST00000538933 C19orf44Q9H6X5 657 aa19.51■□□□□ 0.71
CLSTN3-208ENST00000538933 CADPS2Q86UW7 1296 aa19.5■□□□□ 0.71
CLSTN3-208ENST00000538933 AFF2P51816 1311 aa19.5■□□□□ 0.71
CLSTN3-208ENST00000538933 TMEM131LA2VDJ0 1609 aa19.49■□□□□ 0.71
CLSTN3-208ENST00000538933 EP400Q96L91 3159 aa19.49■□□□□ 0.71
CLSTN3-208ENST00000538933 RIMS2Q9UQ26 1411 aa19.49■□□□□ 0.71
CLSTN3-208ENST00000538933 NUTM2BA6NNL0 878 aaPredicted RBP19.48■□□□□ 0.71
CLSTN3-208ENST00000538933 NUTM2EB1AL46 878 aaPredicted RBP19.48■□□□□ 0.71
CLSTN3-208ENST00000538933 BRINP3Q76B58 766 aa19.48■□□□□ 0.71
CLSTN3-208ENST00000538933 NUTM2AQ8IVF1 878 aaPredicted RBP19.48■□□□□ 0.71
CLSTN3-208ENST00000538933 GCC2Q8IWJ2 1684 aa19.48■□□□□ 0.71
CLSTN3-208ENST00000538933 ADAMTS13Q76LX8 1427 aa19.48■□□□□ 0.71
CLSTN3-208ENST00000538933 RGS12O14924 1447 aa19.47■□□□□ 0.71
CLSTN3-208ENST00000538933 DAPK1P53355 1430 aa19.46■□□□□ 0.71
CLSTN3-208ENST00000538933 ATF3P18847 181 aa19.46■□□□□ 0.71
CLSTN3-208ENST00000538933 SETD5Q9C0A6 1442 aa19.45■□□□□ 0.7
CLSTN3-208ENST00000538933 PTPN23Q9H3S7 1636 aa19.45■□□□□ 0.7
CLSTN3-208ENST00000538933 C14orf37Q86TY3 774 aa19.45■□□□□ 0.7
CLSTN3-208ENST00000538933 VPS8Q8N3P4 1428 aa19.44■□□□□ 0.7
CLSTN3-208ENST00000538933 RPRD2Q5VT52 1461 aaKnown RBP19.43■□□□□ 0.7
CLSTN3-208ENST00000538933 HDGFP51858 240 aaKnown RBP19.43■□□□□ 0.7
CLSTN3-208ENST00000538933 RBM6P78332 1123 aaKnown RBP19.43■□□□□ 0.7
CLSTN3-208ENST00000538933 QTRT2Q9H974 415 aaKnown RBP19.43■□□□□ 0.7
CLSTN3-208ENST00000538933 NHSL1Q5SYE7 1610 aa19.43■□□□□ 0.7
CLSTN3-208ENST00000538933 PIK3R4Q99570 1358 aa19.43■□□□□ 0.7
CLSTN3-208ENST00000538933 PPP1R15AO75807 674 aaPredicted RBP19.42■□□□□ 0.7
CLSTN3-208ENST00000538933 ANKRD30AQ9BXX3 1397 aa19.41■□□□□ 0.7
CLSTN3-208ENST00000538933 ASXL1Q8IXJ9 1541 aa19.41■□□□□ 0.7
CLSTN3-208ENST00000538933 PTPRUQ92729 1446 aa19.4■□□□□ 0.7
CLSTN3-208ENST00000538933 CHIC2Q9UKJ5 165 aa19.39■□□□□ 0.69
CLSTN3-208ENST00000538933 DCCP43146 1447 aa19.38■□□□□ 0.69
CLSTN3-208ENST00000538933 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.38■□□□□ 0.69
CLSTN3-208ENST00000538933 LRRC59Q96AG4 307 aaKnown RBP19.37■□□□□ 0.69
CLSTN3-208ENST00000538933 C8orf37Q96NL8 207 aa19.37■□□□□ 0.69
CLSTN3-208ENST00000538933 AMOTL2Q9Y2J4 779 aa19.37■□□□□ 0.69
CLSTN3-208ENST00000538933 MST1RQ04912 1400 aa19.36■□□□□ 0.69
CLSTN3-208ENST00000538933 NUTM2DQ5VT03 806 aaPredicted RBP19.36■□□□□ 0.69
CLSTN3-208ENST00000538933 PNPLA6Q8IY17 1366 aa19.35■□□□□ 0.69
CLSTN3-208ENST00000538933 TRPM2O94759 1503 aa19.34■□□□□ 0.69
CLSTN3-208ENST00000538933 SETBP1Q9Y6X0 1596 aa19.33■□□□□ 0.69
CLSTN3-208ENST00000538933 XRN1Q8IZH2 1706 aaKnown RBP19.33■□□□□ 0.68
CLSTN3-208ENST00000538933 ADGRL2O95490 1459 aa19.33■□□□□ 0.68
CLSTN3-208ENST00000538933 ATAD2Q6PL18 1390 aa19.32■□□□□ 0.68
CLSTN3-208ENST00000538933 UNC13BO14795 1591 aa19.32■□□□□ 0.68
CLSTN3-208ENST00000538933 DDX17Q92841 729 aaKnown RBP19.32■□□□□ 0.68
CLSTN3-208ENST00000538933 NGLY1Q96IV0 654 aa19.3■□□□□ 0.68
CLSTN3-208ENST00000538933 ZRANB1Q9UGI0 708 aa19.3■□□□□ 0.68
CLSTN3-208ENST00000538933 NRXN3Q9Y4C0 1643 aa19.29■□□□□ 0.68
CLSTN3-208ENST00000538933 CHGAP10645 457 aaKnown RBP19.29■□□□□ 0.68
CLSTN3-208ENST00000538933 E9PCH4 1651 aa19.29■□□□□ 0.68
CLSTN3-208ENST00000538933 ANKRD50Q9ULJ7 1429 aa19.27■□□□□ 0.68
CLSTN3-208ENST00000538933 LAMC1P11047 1609 aa19.27■□□□□ 0.68
CLSTN3-208ENST00000538933 ADAMTS2O95450 1211 aa19.26■□□□□ 0.67
CLSTN3-208ENST00000538933 FNBP4Q8N3X1 1017 aaPredicted RBP19.24■□□□□ 0.67
CLSTN3-208ENST00000538933 NALCNQ8IZF0 1738 aa19.23■□□□□ 0.67
CLSTN3-208ENST00000538933 USP21Q9UK80 565 aa19.23■□□□□ 0.67
CLSTN3-208ENST00000538933 METP08581 1390 aa19.22■□□□□ 0.67
CLSTN3-208ENST00000538933 FOXD1Q16676 465 aa19.22■□□□□ 0.67
CLSTN3-208ENST00000538933 TRPC5Q9UL62 973 aaPredicted RBP19.22■□□□□ 0.67
CLSTN3-208ENST00000538933 ATRNO75882 1429 aa19.22■□□□□ 0.67
CLSTN3-208ENST00000538933 ADGRL3Q9HAR2 1447 aa19.22■□□□□ 0.67
CLSTN3-208ENST00000538933 CCDC125Q86Z20 511 aa19.21■□□□□ 0.67
CLSTN3-208ENST00000538933 APLP2Q06481 763 aa19.2■□□□□ 0.66
CLSTN3-208ENST00000538933 SOS2Q07890 1332 aaPredicted RBP19.2■□□□□ 0.66
CLSTN3-208ENST00000538933 C1orf167Q5SNV9 1468 aa19.19■□□□□ 0.66
CLSTN3-208ENST00000538933 PTCH1Q13635 1447 aa19.18■□□□□ 0.66
CLSTN3-208ENST00000538933 COL22A1Q8NFW1 1626 aaPredicted RBP19.18■□□□□ 0.66
CLSTN3-208ENST00000538933 IQGAP3Q86VI3 1631 aa19.17■□□□□ 0.66
CLSTN3-208ENST00000538933 BCL9LQ86UU0 1499 aa19.16■□□□□ 0.66
CLSTN3-208ENST00000538933 ORAI2Q96SN7 254 aa19.14■□□□□ 0.65
CLSTN3-208ENST00000538933 MARF1Q9Y4F3 1742 aaKnown RBP19.14■□□□□ 0.65
CLSTN3-208ENST00000538933 MYOM2P54296 1465 aa19.11■□□□□ 0.65
CLSTN3-208ENST00000538933 LRP5O75197 1615 aa19.1■□□□□ 0.65
CLSTN3-208ENST00000538933 GJD4Q96KN9 370 aaPredicted RBP19.09■□□□□ 0.65
CLSTN3-208ENST00000538933 FAM50AQ14320 339 aaKnown RBP19.08■□□□□ 0.64
CLSTN3-208ENST00000538933 BRWD3Q6RI45 1802 aa19.08■□□□□ 0.64
CLSTN3-208ENST00000538933 BLMP54132 1417 aaPredicted RBP19.07■□□□□ 0.64
CLSTN3-208ENST00000538933 SPHKAPQ2M3C7 1700 aa19.06■□□□□ 0.64
CLSTN3-208ENST00000538933 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.06■□□□□ 0.64
CLSTN3-208ENST00000538933 GLI3P10071 1580 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms