RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 MAGI2Q86UL8 1455 aa13.85□□□□□ -0.19
CLSTN3-207ENST00000537408 KTN1Q86UP2 1357 aaKnown RBP13.85□□□□□ -0.19
CLSTN3-207ENST00000537408 PKD2Q13563 968 aa13.85□□□□□ -0.19
CLSTN3-207ENST00000537408 FAM13BQ9NYF5 915 aa13.84□□□□□ -0.19
CLSTN3-207ENST00000537408 CCDC7Q96M83 1385 aa13.84□□□□□ -0.19
CLSTN3-207ENST00000537408 TMC1Q8TDI8 760 aa13.84□□□□□ -0.19
CLSTN3-207ENST00000537408 HSPA2P54652 639 aa13.83□□□□□ -0.2
CLSTN3-207ENST00000537408 SLC52A1Q9NWF4 448 aa13.83□□□□□ -0.2
CLSTN3-207ENST00000537408 ZFYVE16Q7Z3T8 1539 aa13.83□□□□□ -0.2
CLSTN3-207ENST00000537408 GPATCH8Q9UKJ3 1502 aaKnown RBP13.83□□□□□ -0.2
CLSTN3-207ENST00000537408 DHX29Q7Z478 1369 aaKnown RBP13.83□□□□□ -0.2
CLSTN3-207ENST00000537408 GZF1Q9H116 711 aaPredicted RBP13.83□□□□□ -0.2
CLSTN3-207ENST00000537408 IPO4Q8TEX9 1081 aaKnown RBP13.82□□□□□ -0.2
CLSTN3-207ENST00000537408 SLKQ9H2G2 1235 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-207ENST00000537408 ZHX1Q9UKY1 873 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-207ENST00000537408 TIAM1Q13009 1591 aa13.82□□□□□ -0.2
CLSTN3-207ENST00000537408 UHRF1BP1Q6BDS2 1440 aa13.82□□□□□ -0.2
CLSTN3-207ENST00000537408 MSNP26038 577 aaKnown RBP13.82□□□□□ -0.2
CLSTN3-207ENST00000537408 TERF1P54274 439 aa13.82□□□□□ -0.2
CLSTN3-207ENST00000537408 DIP2BQ9P265 1576 aa13.82□□□□□ -0.2
CLSTN3-207ENST00000537408 FSD2A1L4K1 749 aa13.81□□□□□ -0.2
CLSTN3-207ENST00000537408 PANK2Q9BZ23 570 aa13.81□□□□□ -0.2
CLSTN3-207ENST00000537408 A2MP01023 1474 aa13.81□□□□□ -0.2
CLSTN3-207ENST00000537408 ANKRD50Q9ULJ7 1429 aa13.81□□□□□ -0.2
CLSTN3-207ENST00000537408 CENPQQ7L2Z9 268 aaPredicted RBP13.81□□□□□ -0.2
CLSTN3-207ENST00000537408 UTP14CQ5TAP6 766 aaKnown RBP13.8□□□□□ -0.2
CLSTN3-207ENST00000537408 CHMP4BQ9H444 224 aaKnown RBP13.8□□□□□ -0.2
CLSTN3-207ENST00000537408 CDK11BP21127 795 aaKnown RBP13.79□□□□□ -0.2
CLSTN3-207ENST00000537408 PDE3BQ13370 1112 aa13.79□□□□□ -0.2
CLSTN3-207ENST00000537408 GRPEL1Q9HAV7 217 aa13.79□□□□□ -0.2
CLSTN3-207ENST00000537408 VGFO15240 615 aaPredicted RBP13.79□□□□□ -0.2
CLSTN3-207ENST00000537408 GLI2P10070 1586 aa13.79□□□□□ -0.2
CLSTN3-207ENST00000537408 TRAPPC8Q9Y2L5 1435 aa13.79□□□□□ -0.2
CLSTN3-207ENST00000537408 FOXD1Q16676 465 aa13.79□□□□□ -0.2
CLSTN3-207ENST00000537408 UPF2Q9HAU5 1272 aaKnown RBP13.78□□□□□ -0.2
CLSTN3-207ENST00000537408 CAMSAP2Q08AD1 1489 aa13.78□□□□□ -0.2
CLSTN3-207ENST00000537408 CFAP43Q8NDM7 1665 aa13.78□□□□□ -0.2
CLSTN3-207ENST00000537408 GTF2E1P29083 439 aaPredicted RBP13.77□□□□□ -0.21
CLSTN3-207ENST00000537408 PROSER2Q86WR7 435 aaPredicted RBP13.77□□□□□ -0.21
CLSTN3-207ENST00000537408 TNRQ92752 1358 aa13.77□□□□□ -0.21
CLSTN3-207ENST00000537408 MPHOSPH9Q99550 1183 aa13.76□□□□□ -0.21
CLSTN3-207ENST00000537408 STAC3Q96MF2 364 aa13.76□□□□□ -0.21
CLSTN3-207ENST00000537408 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.76□□□□□ -0.21
CLSTN3-207ENST00000537408 NCOA1Q15788 1441 aa13.76□□□□□ -0.21
CLSTN3-207ENST00000537408 LMOD2Q6P5Q4 547 aa13.76□□□□□ -0.21
CLSTN3-207ENST00000537408 ATF3P18847 181 aa13.75□□□□□ -0.21
CLSTN3-207ENST00000537408 MAP3K1Q13233 1512 aa13.75□□□□□ -0.21
CLSTN3-207ENST00000537408 OFD1O75665 1012 aa13.75□□□□□ -0.21
CLSTN3-207ENST00000537408 CRBNQ96SW2 442 aa13.75□□□□□ -0.21
CLSTN3-207ENST00000537408 SYCP2Q9BX26 1530 aa13.74□□□□□ -0.21
CLSTN3-207ENST00000537408 C8orf34Q49A92 452 aa13.74□□□□□ -0.21
CLSTN3-207ENST00000537408 SENP3-EIF4A1A0A087X0R7 540 aa13.74□□□□□ -0.21
CLSTN3-207ENST00000537408 DMTNQ08495 405 aa13.74□□□□□ -0.21
CLSTN3-207ENST00000537408 TAF3Q5VWG9 929 aa13.74□□□□□ -0.21
CLSTN3-207ENST00000537408 PHF23Q9BUL5 403 aaPredicted RBP13.74□□□□□ -0.21
CLSTN3-207ENST00000537408 DDX11L8A8MPP1 907 aa13.73□□□□□ -0.21
CLSTN3-207ENST00000537408 TRAK2O60296 914 aa13.73□□□□□ -0.21
CLSTN3-207ENST00000537408 NUTM2DQ5VT03 806 aaPredicted RBP13.73□□□□□ -0.21
CLSTN3-207ENST00000537408 ZMYM3Q14202 1370 aa13.73□□□□□ -0.21
CLSTN3-207ENST00000537408 MCM4P33991 863 aa13.73□□□□□ -0.21
CLSTN3-207ENST00000537408 ITSN2Q9NZM3 1697 aa13.73□□□□□ -0.21
CLSTN3-207ENST00000537408 RTEL1-TNFRSF6BF6WH68 1400 aa13.73□□□□□ -0.21
CLSTN3-207ENST00000537408 ARAP3Q8WWN8 1544 aa13.73□□□□□ -0.21
CLSTN3-207ENST00000537408 TOM1O60784 492 aa13.73□□□□□ -0.21
CLSTN3-207ENST00000537408 ARID3AQ99856 593 aa13.73□□□□□ -0.21
CLSTN3-207ENST00000537408 PAXIP1Q6ZW49 1069 aaPredicted RBP13.73□□□□□ -0.21
CLSTN3-207ENST00000537408 PRDM10Q9NQV6 1147 aa13.73□□□□□ -0.21
CLSTN3-207ENST00000537408 ZSCAN30Q86W11 494 aa13.72□□□□□ -0.21
CLSTN3-207ENST00000537408 YEATS2Q9ULM3 1422 aa13.72□□□□□ -0.21
CLSTN3-207ENST00000537408 PPP4R3BQ5MIZ7 849 aa13.71□□□□□ -0.21
CLSTN3-207ENST00000537408 R3HCC1Q9Y3T6 440 aaKnown RBP13.71□□□□□ -0.21
CLSTN3-207ENST00000537408 KIF20AO95235 890 aa13.71□□□□□ -0.21
CLSTN3-207ENST00000537408 PIP4K2BP78356 416 aa13.71□□□□□ -0.21
CLSTN3-207ENST00000537408 CCDC173Q0VFZ6 552 aa13.71□□□□□ -0.21
CLSTN3-207ENST00000537408 FBXO31Q5XUX0 539 aaPredicted RBP13.71□□□□□ -0.21
CLSTN3-207ENST00000537408 DAPK1P53355 1430 aa13.71□□□□□ -0.21
CLSTN3-207ENST00000537408 UBAP1LF5GYI3 381 aa13.71□□□□□ -0.22
CLSTN3-207ENST00000537408 SKAP1Q86WV1 359 aa13.71□□□□□ -0.22
CLSTN3-207ENST00000537408 STK26Q9P289 416 aa13.71□□□□□ -0.22
CLSTN3-207ENST00000537408 FAM135AQ9P2D6 1515 aa13.7□□□□□ -0.22
CLSTN3-207ENST00000537408 GTPBP4Q9BZE4 634 aaKnown RBP13.7□□□□□ -0.22
CLSTN3-207ENST00000537408 ERBB4Q15303 1308 aa13.7□□□□□ -0.22
CLSTN3-207ENST00000537408 MYO5CQ9NQX4 1742 aa13.7□□□□□ -0.22
CLSTN3-207ENST00000537408 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.7□□□□□ -0.22
CLSTN3-207ENST00000537408 PNISRQ8TF01 805 aaKnown RBP13.7□□□□□ -0.22
CLSTN3-207ENST00000537408 UQCRHLA0A096LP55 91 aa13.69□□□□□ -0.22
CLSTN3-207ENST00000537408 DYNC1I1O14576 645 aa13.69□□□□□ -0.22
CLSTN3-207ENST00000537408 UQCRHP07919 91 aa13.69□□□□□ -0.22
CLSTN3-207ENST00000537408 LETM1O95202 739 aaPredicted RBP13.69□□□□□ -0.22
CLSTN3-207ENST00000537408 KIF7Q2M1P5 1343 aa13.68□□□□□ -0.22
CLSTN3-207ENST00000537408 CARD11Q9BXL7 1154 aa13.68□□□□□ -0.22
CLSTN3-207ENST00000537408 PTMSP20962 102 aa13.68□□□□□ -0.22
CLSTN3-207ENST00000537408 CSPP1Q1MSJ5 1256 aa13.68□□□□□ -0.22
CLSTN3-207ENST00000537408 RIPK4P57078 832 aa13.68□□□□□ -0.22
CLSTN3-207ENST00000537408 CCDC144AA2RUR9 1427 aa13.68□□□□□ -0.22
CLSTN3-207ENST00000537408 MEX3CQ5U5Q3 659 aaKnown RBP13.67□□□□□ -0.22
CLSTN3-207ENST00000537408 CCDC94Q9BW85 323 aaPredicted RBP13.67□□□□□ -0.22
CLSTN3-207ENST00000537408 ABCA9Q8IUA7 1624 aa13.67□□□□□ -0.22
CLSTN3-207ENST00000537408 MLH3Q9UHC1 1453 aa13.67□□□□□ -0.22
CLSTN3-207ENST00000537408 CHMP5Q9NZZ3 219 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 189.4 ms