RNA–Protein interactions for RNA: ENST00000535810.1

CHD4-204, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 607 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-204ENST00000535810 IQGAP1P46940 1657 aa13.47□□□□□ -0.25
CHD4-204ENST00000535810 IQGAP3Q86VI3 1631 aa13.47□□□□□ -0.25
CHD4-204ENST00000535810 SCAF11Q99590 1463 aaKnown RBP13.47□□□□□ -0.25
CHD4-204ENST00000535810 GCC2Q8IWJ2 1684 aa13.47□□□□□ -0.25
CHD4-204ENST00000535810 IDI1Q13907 227 aa13.46□□□□□ -0.25
CHD4-204ENST00000535810 KDM5AP29375 1690 aaKnown RBP13.46□□□□□ -0.26
CHD4-204ENST00000535810 TMEM2Q9UHN6 1383 aa13.45□□□□□ -0.26
CHD4-204ENST00000535810 ADGRB3O60242 1522 aa13.45□□□□□ -0.26
CHD4-204ENST00000535810 NUP155O75694 1391 aa13.45□□□□□ -0.26
CHD4-204ENST00000535810 SLC52A1Q9NWF4 448 aa13.44□□□□□ -0.26
CHD4-204ENST00000535810 E9PCH4 1651 aa13.44□□□□□ -0.26
CHD4-204ENST00000535810 LTKP29376 864 aa13.43□□□□□ -0.26
CHD4-204ENST00000535810 NAIPQ13075 1403 aa13.43□□□□□ -0.26
CHD4-204ENST00000535810 STAG3Q9UJ98 1225 aa13.43□□□□□ -0.26
CHD4-204ENST00000535810 CPS1P31327 1500 aa13.43□□□□□ -0.26
CHD4-204ENST00000535810 TXNDC2Q86VQ3 553 aa13.42□□□□□ -0.26
CHD4-204ENST00000535810 HFM1A2PYH4 1435 aa13.4□□□□□ -0.26
CHD4-204ENST00000535810 EID1Q9Y6B2 187 aa13.4□□□□□ -0.26
CHD4-204ENST00000535810 TMEM131LA2VDJ0 1609 aa13.38□□□□□ -0.27
CHD4-204ENST00000535810 STRCP1A6NGW2 1772 aa13.37□□□□□ -0.27
CHD4-204ENST00000535810 ZFYVE9O95405 1425 aa13.37□□□□□ -0.27
CHD4-204ENST00000535810 U3KPZ7 1027 aaPredicted RBP13.36□□□□□ -0.27
CHD4-204ENST00000535810 MYO5BQ9ULV0 1848 aa13.36□□□□□ -0.27
CHD4-204ENST00000535810 RGS17Q9UGC6 210 aaPredicted RBP13.35□□□□□ -0.27
CHD4-204ENST00000535810 LRRC7Q96NW7 1537 aa13.34□□□□□ -0.27
CHD4-204ENST00000535810 RIMS2Q9UQ26 1411 aa13.34□□□□□ -0.27
CHD4-204ENST00000535810 SPHKAPQ2M3C7 1700 aa13.33□□□□□ -0.27
CHD4-204ENST00000535810 CHGAP10645 457 aaKnown RBP13.32□□□□□ -0.28
CHD4-204ENST00000535810 PLEKHG1Q9ULL1 1385 aa13.32□□□□□ -0.28
CHD4-204ENST00000535810 TRPM2O94759 1503 aa13.31□□□□□ -0.28
CHD4-204ENST00000535810 POTEDQ86YR6 584 aa13.31□□□□□ -0.28
CHD4-204ENST00000535810 SLC26A8Q96RN1 970 aa13.31□□□□□ -0.28
CHD4-204ENST00000535810 ALKQ9UM73 1620 aa13.31□□□□□ -0.28
CHD4-204ENST00000535810 PPP1R15AO75807 674 aaPredicted RBP13.3□□□□□ -0.28
CHD4-204ENST00000535810 ATXN8OSP0DMR3 200 aa13.29□□□□□ -0.28
CHD4-204ENST00000535810 HDGFP51858 240 aaKnown RBP13.29□□□□□ -0.28
CHD4-204ENST00000535810 TRIM52Q96A61 297 aa13.29□□□□□ -0.28
CHD4-204ENST00000535810 NWD1Q149M9 1564 aa13.28□□□□□ -0.28
CHD4-204ENST00000535810 CLTCL1P53675 1640 aa13.28□□□□□ -0.28
CHD4-204ENST00000535810 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.28□□□□□ -0.28
CHD4-204ENST00000535810 KCNA6P17658 529 aa13.27□□□□□ -0.29
CHD4-204ENST00000535810 NUTM2DQ5VT03 806 aaPredicted RBP13.27□□□□□ -0.29
CHD4-204ENST00000535810 BCANQ96GW7 911 aa13.27□□□□□ -0.29
CHD4-204ENST00000535810 NKTRP30414 1462 aaKnown RBP13.27□□□□□ -0.29
CHD4-204ENST00000535810 XIRP1Q702N8 1843 aaKnown RBP13.26□□□□□ -0.29
CHD4-204ENST00000535810 ADAMTS13Q76LX8 1427 aa13.26□□□□□ -0.29
CHD4-204ENST00000535810 TMEM94Q12767 1356 aa13.25□□□□□ -0.29
CHD4-204ENST00000535810 DIP2AQ14689 1571 aa13.24□□□□□ -0.29
CHD4-204ENST00000535810 POTEAQ6S8J7 498 aa13.24□□□□□ -0.29
CHD4-204ENST00000535810 TBX22Q9Y458 520 aa13.24□□□□□ -0.29
CHD4-204ENST00000535810 NEXMIFQ5QGS0 1516 aa13.23□□□□□ -0.29
CHD4-204ENST00000535810 CHD2O14647 1828 aaKnown RBP13.23□□□□□ -0.29
CHD4-204ENST00000535810 NRXN3Q9Y4C0 1643 aa13.22□□□□□ -0.29
CHD4-204ENST00000535810 SRCAPQ6ZRS2 3230 aa13.22□□□□□ -0.29
CHD4-204ENST00000535810 ZNF326Q5BKZ1 582 aaKnown RBP13.22□□□□□ -0.29
CHD4-204ENST00000535810 ATF5Q9Y2D1 282 aaPredicted RBP13.22□□□□□ -0.29
CHD4-204ENST00000535810 SETBP1Q9Y6X0 1596 aa13.22□□□□□ -0.29
CHD4-204ENST00000535810 SETD5Q9C0A6 1442 aa13.22□□□□□ -0.29
CHD4-204ENST00000535810 KIF1BO60333 1816 aa13.21□□□□□ -0.29
CHD4-204ENST00000535810 PROSER2Q86WR7 435 aaPredicted RBP13.21□□□□□ -0.29
CHD4-204ENST00000535810 RBM33Q96EV2 1170 aaKnown RBP13.21□□□□□ -0.29
CHD4-204ENST00000535810 PIK3R4Q99570 1358 aa13.2□□□□□ -0.3
CHD4-204ENST00000535810 SAMD1Q6SPF0 538 aaPredicted RBP13.2□□□□□ -0.3
CHD4-204ENST00000535810 MPHOSPH9Q99550 1183 aa13.19□□□□□ -0.3
CHD4-204ENST00000535810 PTPRUQ92729 1446 aa13.18□□□□□ -0.3
CHD4-204ENST00000535810 RAB3GAP2Q9H2M9 1393 aa13.18□□□□□ -0.3
CHD4-204ENST00000535810 CCDC144AA2RUR9 1427 aa13.17□□□□□ -0.3
CHD4-204ENST00000535810 MSH6P52701 1360 aa13.17□□□□□ -0.3
CHD4-204ENST00000535810 ACIN1Q9UKV3 1341 aaKnown RBP13.16□□□□□ -0.3
CHD4-204ENST00000535810 METP08581 1390 aa13.16□□□□□ -0.3
CHD4-204ENST00000535810 XRN1Q8IZH2 1706 aaKnown RBP13.16□□□□□ -0.3
CHD4-204ENST00000535810 FAM135BQ49AJ0 1406 aa13.15□□□□□ -0.3
CHD4-204ENST00000535810 NCOA3Q9Y6Q9 1424 aa13.15□□□□□ -0.3
CHD4-204ENST00000535810 AMOTL2Q9Y2J4 779 aa13.15□□□□□ -0.3
CHD4-204ENST00000535810 RPGRIP1LQ68CZ1 1315 aa13.14□□□□□ -0.31
CHD4-204ENST00000535810 SPATA31E1Q6ZUB1 1445 aa13.14□□□□□ -0.31
CHD4-204ENST00000535810 PPLO60437 1756 aa13.14□□□□□ -0.31
CHD4-204ENST00000535810 VGFO15240 615 aaPredicted RBP13.13□□□□□ -0.31
CHD4-204ENST00000535810 SETD1AO15047 1707 aaKnown RBP13.12□□□□□ -0.31
CHD4-204ENST00000535810 ROBO1Q9Y6N7 1651 aa13.12□□□□□ -0.31
CHD4-204ENST00000535810 C14orf37Q86TY3 774 aa13.11□□□□□ -0.31
CHD4-204ENST00000535810 UPF1Q92900 1129 aaKnown RBP eCLIP13.1□□□□□ -0.31
CHD4-204ENST00000535810 C19orf44Q9H6X5 657 aa13.1□□□□□ -0.31
CHD4-204ENST00000535810 SLAIN2Q9P270 581 aa13.1□□□□□ -0.31
CHD4-204ENST00000535810 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.09□□□□□ -0.31
CHD4-204ENST00000535810 ANKRD30BQ9BXX2 1392 aa13.08□□□□□ -0.31
CHD4-204ENST00000535810 IFT172Q9UG01 1749 aa13.08□□□□□ -0.32
CHD4-204ENST00000535810 DCCP43146 1447 aa13.08□□□□□ -0.32
CHD4-204ENST00000535810 PTCH1Q13635 1447 aa13.08□□□□□ -0.32
CHD4-204ENST00000535810 PRAG1Q86YV5 1406 aa13.08□□□□□ -0.32
CHD4-204ENST00000535810 RGL3Q3MIN7 710 aa13.08□□□□□ -0.32
CHD4-204ENST00000535810 CADPS2Q86UW7 1296 aa13.08□□□□□ -0.32
CHD4-204ENST00000535810 ADGRF5Q8IZF2 1346 aa13.08□□□□□ -0.32
CHD4-204ENST00000535810 HRCP23327 699 aa13.07□□□□□ -0.32
CHD4-204ENST00000535810 ADGRL3Q9HAR2 1447 aa13.06□□□□□ -0.32
CHD4-204ENST00000535810 ATF3P18847 181 aa13.06□□□□□ -0.32
CHD4-204ENST00000535810 ROBO2Q9HCK4 1378 aa13.06□□□□□ -0.32
CHD4-204ENST00000535810 PIK3C2GO75747 1445 aa13.05□□□□□ -0.32
CHD4-204ENST00000535810 NALCNQ8IZF0 1738 aa13.05□□□□□ -0.32
CHD4-204ENST00000535810 ASXL1Q8IXJ9 1541 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms