RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 CADPSQ9ULU8 1353 aa22.3■■□□□ 1.16
SFSWAP-203ENST00000535236 DDX58O95786 925 aaKnown RBP22.29■■□□□ 1.16
SFSWAP-203ENST00000535236 APPP05067 770 aa22.29■■□□□ 1.16
SFSWAP-203ENST00000535236 BECN2A8MW95 431 aa22.28■■□□□ 1.16
SFSWAP-203ENST00000535236 FBXW7Q969H0 707 aa22.28■■□□□ 1.16
SFSWAP-203ENST00000535236 IFIT2P09913 472 aaKnown RBP22.28■■□□□ 1.16
SFSWAP-203ENST00000535236 TNNT3P45378 269 aaPredicted RBP22.28■■□□□ 1.16
SFSWAP-203ENST00000535236 WWC1Q8IX03 1113 aa22.28■■□□□ 1.16
SFSWAP-203ENST00000535236 DHX16O60231 1041 aaKnown RBP22.28■■□□□ 1.16
SFSWAP-203ENST00000535236 DIAPH1O60610 1272 aaKnown RBP22.27■■□□□ 1.16
SFSWAP-203ENST00000535236 ZKSCAN1P17029 563 aaPredicted RBP22.27■■□□□ 1.16
SFSWAP-203ENST00000535236 PTPRGP23470 1445 aa22.27■■□□□ 1.16
SFSWAP-203ENST00000535236 NECTIN2Q92692 538 aa22.26■■□□□ 1.15
SFSWAP-203ENST00000535236 FOXD4L6Q3SYB3 417 aaPredicted RBP22.25■■□□□ 1.15
SFSWAP-203ENST00000535236 FOXD4L3Q6VB84 417 aaPredicted RBP22.25■■□□□ 1.15
SFSWAP-203ENST00000535236 CCDC47Q96A33 483 aaKnown RBP22.25■■□□□ 1.15
SFSWAP-203ENST00000535236 CPLX1O14810 134 aa22.24■■□□□ 1.15
SFSWAP-203ENST00000535236 DDX49Q9Y6V7 483 aaKnown RBP22.24■■□□□ 1.15
SFSWAP-203ENST00000535236 FAM161AQ3B820 660 aa22.24■■□□□ 1.15
SFSWAP-203ENST00000535236 ANO2Q9NQ90 1003 aa22.23■■□□□ 1.15
SFSWAP-203ENST00000535236 TRDNQ13061 729 aa22.23■■□□□ 1.15
SFSWAP-203ENST00000535236 API5Q9BZZ5 524 aaKnown RBP22.23■■□□□ 1.15
SFSWAP-203ENST00000535236 COG6Q9Y2V7 657 aa22.23■■□□□ 1.15
SFSWAP-203ENST00000535236 PLIN1O60240 522 aa22.22■■□□□ 1.15
SFSWAP-203ENST00000535236 G3BP1Q13283 466 aaKnown RBP eCLIP22.22■■□□□ 1.15
SFSWAP-203ENST00000535236 REC8O95072 547 aa22.22■■□□□ 1.15
SFSWAP-203ENST00000535236 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.21■■□□□ 1.15
SFSWAP-203ENST00000535236 PCMTD1Q96MG8 357 aaPredicted RBP22.21■■□□□ 1.15
SFSWAP-203ENST00000535236 DDX19BQ9UMR2 479 aa22.21■■□□□ 1.15
SFSWAP-203ENST00000535236 RIPK4P57078 832 aa22.2■■□□□ 1.15
SFSWAP-203ENST00000535236 CCAR2Q8N163 923 aaKnown RBP22.2■■□□□ 1.15
SFSWAP-203ENST00000535236 AEBP2Q6ZN18 517 aaPredicted RBP22.2■■□□□ 1.14
SFSWAP-203ENST00000535236 FKBP5Q13451 457 aaPredicted RBP22.2■■□□□ 1.14
SFSWAP-203ENST00000535236 CWC22Q9HCG8 908 aaKnown RBP22.2■■□□□ 1.14
SFSWAP-203ENST00000535236 APAF1O14727 1248 aa22.2■■□□□ 1.14
SFSWAP-203ENST00000535236 SKOR2Q2VWA4 1001 aaPredicted RBP22.19■■□□□ 1.14
SFSWAP-203ENST00000535236 ROCK1Q13464 1354 aa22.19■■□□□ 1.14
SFSWAP-203ENST00000535236 USP47Q96K76 1375 aa22.19■■□□□ 1.14
SFSWAP-203ENST00000535236 CCDC70Q6NSX1 233 aa22.19■■□□□ 1.14
SFSWAP-203ENST00000535236 RNF20Q5VTR2 975 aa22.18■■□□□ 1.14
SFSWAP-203ENST00000535236 NFXL1Q6ZNB6 911 aa22.18■■□□□ 1.14
SFSWAP-203ENST00000535236 ERICH2A1L162 156 aa22.18■■□□□ 1.14
SFSWAP-203ENST00000535236 CRBNQ96SW2 442 aa22.18■■□□□ 1.14
SFSWAP-203ENST00000535236 ANKRD20A12PQ8NF67 263 aa22.18■■□□□ 1.14
SFSWAP-203ENST00000535236 RRP1P56182 461 aaKnown RBP22.17■■□□□ 1.14
SFSWAP-203ENST00000535236 RAPGEF4Q8WZA2 1011 aa22.17■■□□□ 1.14
SFSWAP-203ENST00000535236 RBM33Q96EV2 1170 aaKnown RBP22.17■■□□□ 1.14
SFSWAP-203ENST00000535236 OSCARQ8IYS5 282 aa22.17■■□□□ 1.14
SFSWAP-203ENST00000535236 KLHL34Q8N239 644 aa22.17■■□□□ 1.14
SFSWAP-203ENST00000535236 ATF3P18847 181 aa22.16■■□□□ 1.14
SFSWAP-203ENST00000535236 IPO7O95373 1038 aaKnown RBP22.16■■□□□ 1.14
SFSWAP-203ENST00000535236 CCDC43Q96MW1 224 aaKnown RBP22.16■■□□□ 1.14
SFSWAP-203ENST00000535236 TOP2AP11388 1531 aaKnown RBP22.15■■□□□ 1.14
SFSWAP-203ENST00000535236 EXOC6Q8TAG9 804 aa22.15■■□□□ 1.14
SFSWAP-203ENST00000535236 HOOK1Q9UJC3 728 aaKnown RBP22.15■■□□□ 1.14
SFSWAP-203ENST00000535236 DZIP1LQ8IYY4 767 aaKnown RBP22.14■■□□□ 1.14
SFSWAP-203ENST00000535236 PDE4AP27815 886 aa22.14■■□□□ 1.13
SFSWAP-203ENST00000535236 CNKSR2Q8WXI2 1034 aa22.14■■□□□ 1.13
SFSWAP-203ENST00000535236 TSPYL4Q9UJ04 414 aa22.14■■□□□ 1.13
SFSWAP-203ENST00000535236 PRKRIP1Q9H875 184 aaPredicted RBP22.13■■□□□ 1.13
SFSWAP-203ENST00000535236 KRI1Q8N9T8 703 aaKnown RBP22.13■■□□□ 1.13
SFSWAP-203ENST00000535236 HSP90AB4PQ58FF6 505 aa22.12■■□□□ 1.13
SFSWAP-203ENST00000535236 TSHZ2Q9NRE2 1034 aa22.12■■□□□ 1.13
SFSWAP-203ENST00000535236 BICD2Q8TD16 824 aa22.11■■□□□ 1.13
SFSWAP-203ENST00000535236 GNAI1P63096 354 aa22.1■■□□□ 1.13
SFSWAP-203ENST00000535236 SAMD1Q6SPF0 538 aaPredicted RBP22.1■■□□□ 1.13
SFSWAP-203ENST00000535236 RIC3Q7Z5B4 369 aa22.1■■□□□ 1.13
SFSWAP-203ENST00000535236 NLRP2Q9NX02 1062 aa22.09■■□□□ 1.13
SFSWAP-203ENST00000535236 ERC2O15083 957 aa22.09■■□□□ 1.13
SFSWAP-203ENST00000535236 SLC4A3P48751 1232 aa22.09■■□□□ 1.13
SFSWAP-203ENST00000535236 FAM69CQ0P6D2 419 aa22.09■■□□□ 1.13
SFSWAP-203ENST00000535236 RUNDC1Q96C34 613 aa22.09■■□□□ 1.13
SFSWAP-203ENST00000535236 GPS2Q13227 327 aa22.08■■□□□ 1.13
SFSWAP-203ENST00000535236 NEUROD6Q96NK8 337 aa22.07■■□□□ 1.12
SFSWAP-203ENST00000535236 DHX57Q6P158 1386 aaKnown RBP22.07■■□□□ 1.12
SFSWAP-203ENST00000535236 SAFBQ15424 915 aaKnown RBP eCLIP22.07■■□□□ 1.124e-7■■■■□ 21.8
SFSWAP-203ENST00000535236 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.07■■□□□ 1.12
SFSWAP-203ENST00000535236 ZBED9Q6R2W3 1325 aa22.07■■□□□ 1.12
SFSWAP-203ENST00000535236 AIMP1Q12904 312 aaKnown RBP22.06■■□□□ 1.12
SFSWAP-203ENST00000535236 HMOX1P09601 288 aa22.05■■□□□ 1.12
SFSWAP-203ENST00000535236 ZNF592Q92610 1267 aa22.05■■□□□ 1.12
SFSWAP-203ENST00000535236 VPS37CA5D8V6 355 aaPredicted RBP22.05■■□□□ 1.12
SFSWAP-203ENST00000535236 INTS3Q68E01 1043 aaKnown RBP22.05■■□□□ 1.12
SFSWAP-203ENST00000535236 RALYLQ86SE5 291 aaKnown RBP22.05■■□□□ 1.12
SFSWAP-203ENST00000535236 WASHC4Q2M389 1173 aa22.04■■□□□ 1.12
SFSWAP-203ENST00000535236 SMC3Q9UQE7 1217 aa22.04■■□□□ 1.12
SFSWAP-203ENST00000535236 CCDC27Q2M243 656 aa22.04■■□□□ 1.12
SFSWAP-203ENST00000535236 PHF23Q9BUL5 403 aaPredicted RBP22.04■■□□□ 1.12
SFSWAP-203ENST00000535236 FYB1O15117 783 aa22.04■■□□□ 1.12
SFSWAP-203ENST00000535236 SETQ01105 290 aaPredicted RBP22.04■■□□□ 1.12
SFSWAP-203ENST00000535236 MIA2Q96PC5 1412 aa22.03■■□□□ 1.12
SFSWAP-203ENST00000535236 FANCD2Q9BXW9 1451 aa22.03■■□□□ 1.12
SFSWAP-203ENST00000535236 NUTM2GQ5VZR2 741 aa22.02■■□□□ 1.12
SFSWAP-203ENST00000535236 WIZO95785 1651 aa22.02■■□□□ 1.12
SFSWAP-203ENST00000535236 FOSBP53539 338 aa22.01■■□□□ 1.11
SFSWAP-203ENST00000535236 WASHC2AQ641Q2 1341 aa21.99■■□□□ 1.11
SFSWAP-203ENST00000535236 HOMER1Q86YM7 354 aa21.99■■□□□ 1.11
SFSWAP-203ENST00000535236 UBTFL1P0CB47 393 aaPredicted RBP21.99■■□□□ 1.11
SFSWAP-203ENST00000535236 BRMS1Q9HCU9 246 aa21.99■■□□□ 1.11
SFSWAP-203ENST00000535236 SASS6Q6UVJ0 657 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms