RNA–Protein interactions for RNA: ENST00000532285.1

CAPN1-222, Transcript of calpain 1, human

TSL 4

Gene CAPN1, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-222	ENST00000532285	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	34.34	■■■■□ 3.09
CAPN1-222	ENST00000532285	ACIN1	Q9UKV3	1341 aa	Known RBP	34.32	■■■■□ 3.09
CAPN1-222	ENST00000532285	SETD5	Q9C0A6	1442 aa		34.31	■■■■□ 3.08
CAPN1-222	ENST00000532285	CLTCL1	P53675	1640 aa		34.31	■■■■□ 3.08
CAPN1-222	ENST00000532285	PPP1R15A	O75807	674 aa	Predicted RBP	34.31	■■■■□ 3.08
CAPN1-222	ENST00000532285	KIF1B	O60333	1816 aa		34.3	■■■■□ 3.08
CAPN1-222	ENST00000532285	PLEKHG1	Q9ULL1	1385 aa		34.3	■■■■□ 3.08
CAPN1-222	ENST00000532285	BCAN	Q96GW7	911 aa		34.29	■■■■□ 3.08
CAPN1-222	ENST00000532285	SLC26A8	Q96RN1	970 aa		34.28	■■■■□ 3.08
CAPN1-222	ENST00000532285	UBAP1L	F5GYI3	381 aa		34.25	■■■■□ 3.07
CAPN1-222	ENST00000532285	LRRC7	Q96NW7	1537 aa		34.24	■■■■□ 3.07
CAPN1-222	ENST00000532285	MPHOSPH9	Q99550	1183 aa		34.21	■■■■□ 3.07
CAPN1-222	ENST00000532285	ZNF326	Q5BKZ1	582 aa	Known RBP	34.2	■■■■□ 3.07
CAPN1-222	ENST00000532285	NUTM2D	Q5VT03	806 aa	Predicted RBP	34.2	■■■■□ 3.07
CAPN1-222	ENST00000532285	KCNA6	P17658	529 aa		34.19	■■■■□ 3.06
CAPN1-222	ENST00000532285	SENP3	Q9H4L4	574 aa	Predicted RBP	34.18	■■■■□ 3.06
CAPN1-222	ENST00000532285	RAB3GAP2	Q9H2M9	1393 aa		34.17	■■■■□ 3.06
CAPN1-222	ENST00000532285	CHD2	O14647	1828 aa	Known RBP	34.16	■■■■□ 3.06
CAPN1-222	ENST00000532285	TBX22	Q9Y458	520 aa		34.16	■■■■□ 3.06
CAPN1-222	ENST00000532285	TOM1	O60784	492 aa		34.15	■■■■□ 3.06
CAPN1-222	ENST00000532285	FOXD1	Q16676	465 aa		34.15	■■■■□ 3.06
CAPN1-222	ENST00000532285	XIRP1	Q702N8	1843 aa	Known RBP	34.15	■■■■□ 3.06
CAPN1-222	ENST00000532285	DIP2A	Q14689	1571 aa		34.15	■■■■□ 3.06
CAPN1-222	ENST00000532285	NWD1	Q149M9	1564 aa		34.14	■■■■□ 3.06
CAPN1-222	ENST00000532285	ADAMTS13	Q76LX8	1427 aa		34.11	■■■■□ 3.05
CAPN1-222	ENST00000532285	NEXMIF	Q5QGS0	1516 aa		34.1	■■■■□ 3.05
CAPN1-222	ENST00000532285	NKTR	P30414	1462 aa	Known RBP	34.08	■■■■□ 3.05
CAPN1-222	ENST00000532285	SETBP1	Q9Y6X0	1596 aa		34.06	■■■■□ 3.04
CAPN1-222	ENST00000532285	CCDC144A	A2RUR9	1427 aa		34.05	■■■■□ 3.04
CAPN1-222	ENST00000532285	PROSER2	Q86WR7	435 aa	Predicted RBP	34.05	■■■■□ 3.04
CAPN1-222	ENST00000532285	NRXN3	Q9Y4C0	1643 aa		34.04	■■■■□ 3.04
CAPN1-222	ENST00000532285	PIK3R4	Q99570	1358 aa		34.04	■■■■□ 3.04
CAPN1-222	ENST00000532285	HRC	P23327	699 aa		34.03	■■■■□ 3.04
CAPN1-222	ENST00000532285	RPGRIP1L	Q68CZ1	1315 aa		34.03	■■■■□ 3.04
CAPN1-222	ENST00000532285	TMEM94	Q12767	1356 aa		34.02	■■■■□ 3.04
CAPN1-222	ENST00000532285	ALK	Q9UM73	1620 aa		34.02	■■■■□ 3.04
CAPN1-222	ENST00000532285	PIP4K2B	P78356	416 aa		34.01	■■■■□ 3.03
CAPN1-222	ENST00000532285	SCAF1	Q9H7N4	1312 aa	Known RBP	34.01	■■■■□ 3.03
CAPN1-222	ENST00000532285	PPL	O60437	1756 aa		34	■■■■□ 3.03
CAPN1-222	ENST00000532285	VGF	O15240	615 aa	Predicted RBP	33.99	■■■■□ 3.03
CAPN1-222	ENST00000532285	RBM33	Q96EV2	1170 aa	Known RBP	33.93	■■■■□ 3.02
CAPN1-222	ENST00000532285	SPATA31E1	Q6ZUB1	1445 aa		33.92	■■■■□ 3.02
CAPN1-222	ENST00000532285	PTPRU	Q92729	1446 aa		33.9	■■■■□ 3.02
CAPN1-222	ENST00000532285	AMOTL2	Q9Y2J4	779 aa		33.9	■■■■□ 3.02
CAPN1-222	ENST00000532285	NCOA3	Q9Y6Q9	1424 aa		33.88	■■■■□ 3.01
CAPN1-222	ENST00000532285	IFT172	Q9UG01	1749 aa		33.88	■■■■□ 3.01
CAPN1-222	ENST00000532285	RGL3	Q3MIN7	710 aa		33.88	■■■■□ 3.01
CAPN1-222	ENST00000532285	XRN1	Q8IZH2	1706 aa	Known RBP	33.87	■■■■□ 3.01
CAPN1-222	ENST00000532285	MET	P08581	1390 aa		33.86	■■■■□ 3.01
CAPN1-222	ENST00000532285	MSH6	P52701	1360 aa		33.86	■■■■□ 3.01
CAPN1-222	ENST00000532285	SETD1A	O15047	1707 aa	Known RBP	33.84	■■■■□ 3.01
CAPN1-222	ENST00000532285	ANKRD30B	Q9BXX2	1392 aa		33.83	■■■■□ 3.01
CAPN1-222	ENST00000532285	HSPA1L	P34931	641 aa		33.82	■■■■□ 3
CAPN1-222	ENST00000532285	C14orf37	Q86TY3	774 aa		33.78	■■■■□ 3
CAPN1-222	ENST00000532285	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	33.76	■■■■□ 3
CAPN1-222	ENST00000532285	ADGRF5	Q8IZF2	1346 aa		33.76	■■■□□ 2.99
CAPN1-222	ENST00000532285	FAM135B	Q49AJ0	1406 aa		33.75	■■■□□ 2.99
CAPN1-222	ENST00000532285	C19orf44	Q9H6X5	657 aa		33.74	■■■□□ 2.99
CAPN1-222	ENST00000532285	ROBO1	Q9Y6N7	1651 aa		33.71	■■■□□ 2.99
CAPN1-222	ENST00000532285	SLAIN2	Q9P270	581 aa		33.71	■■■□□ 2.99
CAPN1-222	ENST00000532285	CADPS2	Q86UW7	1296 aa		33.68	■■■□□ 2.98
CAPN1-222	ENST00000532285	ATF3	P18847	181 aa		33.67	■■■□□ 2.98
CAPN1-222	ENST00000532285	PIK3C2G	O75747	1445 aa		33.66	■■■□□ 2.98
CAPN1-222	ENST00000532285	PTCH1	Q13635	1447 aa		33.65	■■■□□ 2.98
CAPN1-222	ENST00000532285	MYOM2	P54296	1465 aa		33.64	■■■□□ 2.98
CAPN1-222	ENST00000532285	PRAG1	Q86YV5	1406 aa		33.64	■■■□□ 2.98
CAPN1-222	ENST00000532285	DCC	P43146	1447 aa		33.63	■■■□□ 2.97
CAPN1-222	ENST00000532285	NRXN1	Q9ULB1	1477 aa		33.62	■■■□□ 2.97
CAPN1-222	ENST00000532285	NALCN	Q8IZF0	1738 aa		33.61	■■■□□ 2.97
CAPN1-222	ENST00000532285	ROBO2	Q9HCK4	1378 aa		33.6	■■■□□ 2.97
CAPN1-222	ENST00000532285	ADGRL3	Q9HAR2	1447 aa		33.59	■■■□□ 2.97
CAPN1-222	ENST00000532285	LAMC1	P11047	1609 aa		33.58	■■■□□ 2.97
CAPN1-222	ENST00000532285	C14orf93	Q9H972	538 aa	Known RBP	33.56	■■■□□ 2.96
CAPN1-222	ENST00000532285	DISP3	Q9P2K9	1392 aa		33.56	■■■□□ 2.96
CAPN1-222	ENST00000532285	ASXL1	Q8IXJ9	1541 aa		33.53	■■■□□ 2.96
CAPN1-222	ENST00000532285	TMEM132E	Q6IEE7	984 aa		33.53	■■■□□ 2.96
CAPN1-222	ENST00000532285	STAC3	Q96MF2	364 aa		33.53	■■■□□ 2.96
CAPN1-222	ENST00000532285	PHLPP1	O60346	1717 aa		33.53	■■■□□ 2.96
CAPN1-222	ENST00000532285	KNDC1	Q76NI1	1749 aa		33.53	■■■□□ 2.96
CAPN1-222	ENST00000532285	LRPPRC	P42704	1394 aa	Known RBP	33.52	■■■□□ 2.96
CAPN1-222	ENST00000532285	DCAF11	Q8TEB1	546 aa		33.51	■■■□□ 2.95
CAPN1-222	ENST00000532285	TECPR2	O15040	1411 aa		33.51	■■■□□ 2.95
CAPN1-222	ENST00000532285	STK26	Q9P289	416 aa		33.5	■■■□□ 2.95
CAPN1-222	ENST00000532285	ABCC11	Q96J66	1382 aa		33.49	■■■□□ 2.95
CAPN1-222	ENST00000532285	CFAP70	Q5T0N1	1121 aa		33.49	■■■□□ 2.95
CAPN1-222	ENST00000532285	MST1R	Q04912	1400 aa		33.48	■■■□□ 2.95
CAPN1-222	ENST00000532285	YTHDC2	Q9H6S0	1430 aa	Known RBP	33.48	■■■□□ 2.95
CAPN1-222	ENST00000532285	TRIM26	Q12899	539 aa	Predicted RBP	33.48	■■■□□ 2.95
CAPN1-222	ENST00000532285	KDM2A	Q9Y2K7	1162 aa		33.48	■■■□□ 2.95
CAPN1-222	ENST00000532285	MED1	Q15648	1581 aa	Predicted RBP	33.47	■■■□□ 2.95
CAPN1-222	ENST00000532285	DHX57	Q6P158	1386 aa	Known RBP	33.45	■■■□□ 2.94
CAPN1-222	ENST00000532285	BRINP3	Q76B58	766 aa		33.43	■■■□□ 2.94
CAPN1-222	ENST00000532285	AHDC1	Q5TGY3	1603 aa	Predicted RBP	33.42	■■■□□ 2.94
CAPN1-222	ENST00000532285	WAPL	Q7Z5K2	1190 aa		33.4	■■■□□ 2.94
CAPN1-222	ENST00000532285	SIRT1	Q96EB6	747 aa		33.4	■■■□□ 2.94
CAPN1-222	ENST00000532285	COL16A1	Q07092	1604 aa	Predicted RBP	33.39	■■■□□ 2.94
CAPN1-222	ENST00000532285	CDC42BPG	Q6DT37	1551 aa		33.37	■■■□□ 2.93
CAPN1-222	ENST00000532285	C1orf167	Q5SNV9	1468 aa		33.36	■■■□□ 2.93
CAPN1-222	ENST00000532285	NHSL1	Q5SYE7	1610 aa		33.35	■■■□□ 2.93
CAPN1-222	ENST00000532285	ADGRB1	O14514	1584 aa		33.34	■■■□□ 2.93

Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms