RNA–Protein interactions for RNA: ENST00000526966.5

CAPN1-206, Transcript of calpain 1, humanhuman

TSL 4

Gene CAPN1, Length 550 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-206ENST00000526966 FAM50AQ14320 339 aaKnown RBP29.12■■■□□ 2.25
CAPN1-206ENST00000526966 SLC26A8Q96RN1 970 aa29.1■■■□□ 2.25
CAPN1-206ENST00000526966 ZFYVE9O95405 1425 aa29.1■■■□□ 2.25
CAPN1-206ENST00000526966 TMEM131LA2VDJ0 1609 aa29.08■■■□□ 2.25
CAPN1-206ENST00000526966 ROBO1Q9Y6N7 1651 aa29.06■■■□□ 2.24
CAPN1-206ENST00000526966 CHD2O14647 1828 aaKnown RBP29.06■■■□□ 2.24
CAPN1-206ENST00000526966 PLEKHG1Q9ULL1 1385 aa29.03■■■□□ 2.24
CAPN1-206ENST00000526966 E9PCH4 1651 aa29.03■■■□□ 2.24
CAPN1-206ENST00000526966 PROSER2Q86WR7 435 aaPredicted RBP29.02■■■□□ 2.24
CAPN1-206ENST00000526966 RIMS2Q9UQ26 1411 aa29.01■■■□□ 2.23
CAPN1-206ENST00000526966 IQGAP3Q86VI3 1631 aa29.01■■■□□ 2.23
CAPN1-206ENST00000526966 ROCK1Q13464 1354 aa29■■■□□ 2.23
CAPN1-206ENST00000526966 RBM33Q96EV2 1170 aaKnown RBP28.98■■■□□ 2.23
CAPN1-206ENST00000526966 RGS17Q9UGC6 210 aaPredicted RBP28.96■■■□□ 2.23
CAPN1-206ENST00000526966 MSH6P52701 1360 aa28.95■■■□□ 2.22
CAPN1-206ENST00000526966 BCANQ96GW7 911 aa28.94■■■□□ 2.22
CAPN1-206ENST00000526966 HDGFP51858 240 aaKnown RBP28.93■■■□□ 2.22
CAPN1-206ENST00000526966 DIP2AQ14689 1571 aa28.92■■■□□ 2.22
CAPN1-206ENST00000526966 PPP1R15AO75807 674 aaPredicted RBP28.91■■■□□ 2.22
CAPN1-206ENST00000526966 PHLPP1O60346 1717 aa28.89■■■□□ 2.22
CAPN1-206ENST00000526966 ADAMTS13Q76LX8 1427 aa28.89■■■□□ 2.22
CAPN1-206ENST00000526966 TBX22Q9Y458 520 aa28.89■■■□□ 2.22
CAPN1-206ENST00000526966 NCOA3Q9Y6Q9 1424 aa28.88■■■□□ 2.21
CAPN1-206ENST00000526966 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.88■■■□□ 2.21
CAPN1-206ENST00000526966 SLAIN2Q9P270 581 aa28.85■■■□□ 2.21
CAPN1-206ENST00000526966 PIK3R4Q99570 1358 aa28.84■■■□□ 2.21
CAPN1-206ENST00000526966 CHGAP10645 457 aaKnown RBP28.83■■■□□ 2.21
CAPN1-206ENST00000526966 NUP155O75694 1391 aa28.82■■■□□ 2.2
CAPN1-206ENST00000526966 COL16A1Q07092 1604 aaPredicted RBP28.82■■■□□ 2.2
CAPN1-206ENST00000526966 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.81■■■□□ 2.2
CAPN1-206ENST00000526966 SPHKAPQ2M3C7 1700 aa28.8■■■□□ 2.2
CAPN1-206ENST00000526966 TRPM2O94759 1503 aa28.79■■■□□ 2.2
CAPN1-206ENST00000526966 JCADQ9P266 1359 aa28.77■■■□□ 2.2
CAPN1-206ENST00000526966 NUTM2DQ5VT03 806 aaPredicted RBP28.77■■■□□ 2.2
CAPN1-206ENST00000526966 POTEAQ6S8J7 498 aa28.77■■■□□ 2.2
CAPN1-206ENST00000526966 NRXN3Q9Y4C0 1643 aa28.76■■■□□ 2.2
CAPN1-206ENST00000526966 AHDC1Q5TGY3 1603 aaPredicted RBP28.74■■■□□ 2.19
CAPN1-206ENST00000526966 XRN1Q8IZH2 1706 aaKnown RBP28.73■■■□□ 2.19
CAPN1-206ENST00000526966 PTPRUQ92729 1446 aa28.73■■■□□ 2.19
CAPN1-206ENST00000526966 SETBP1Q9Y6X0 1596 aa28.73■■■□□ 2.19
CAPN1-206ENST00000526966 ITGAEP38570 1179 aa28.71■■■□□ 2.19
CAPN1-206ENST00000526966 CADPS2Q86UW7 1296 aa28.7■■■□□ 2.18
CAPN1-206ENST00000526966 C19orf44Q9H6X5 657 aa28.7■■■□□ 2.18
CAPN1-206ENST00000526966 C14orf37Q86TY3 774 aa28.69■■■□□ 2.18
CAPN1-206ENST00000526966 SHPRHQ149N8 1683 aa28.68■■■□□ 2.18
CAPN1-206ENST00000526966 AMOTL2Q9Y2J4 779 aa28.67■■■□□ 2.18
CAPN1-206ENST00000526966 DCCP43146 1447 aa28.66■■■□□ 2.18
CAPN1-206ENST00000526966 LRP6O75581 1613 aa28.65■■■□□ 2.18
CAPN1-206ENST00000526966 ATF3P18847 181 aa28.64■■■□□ 2.18
CAPN1-206ENST00000526966 CLTCL1P53675 1640 aa28.64■■■□□ 2.18
CAPN1-206ENST00000526966 SPATA31A6Q5VVP1 1343 aa28.63■■■□□ 2.17
CAPN1-206ENST00000526966 SETD1AO15047 1707 aaKnown RBP28.63■■■□□ 2.17
CAPN1-206ENST00000526966 NEXMIFQ5QGS0 1516 aa28.61■■■□□ 2.17
CAPN1-206ENST00000526966 PPARGC1BQ86YN6 1023 aaKnown RBP28.61■■■□□ 2.17
CAPN1-206ENST00000526966 KIF1BO60333 1816 aa28.59■■■□□ 2.17
CAPN1-206ENST00000526966 RRBP1Q9P2E9 1410 aaKnown RBP28.59■■■□□ 2.17
CAPN1-206ENST00000526966 BRINP3Q76B58 766 aa28.58■■■□□ 2.17
CAPN1-206ENST00000526966 METP08581 1390 aa28.57■■■□□ 2.16
CAPN1-206ENST00000526966 ASXL1Q8IXJ9 1541 aa28.57■■■□□ 2.16
CAPN1-206ENST00000526966 NHSL1Q5SYE7 1610 aa28.57■■■□□ 2.16
CAPN1-206ENST00000526966 MST1RQ04912 1400 aa28.55■■■□□ 2.16
CAPN1-206ENST00000526966 NAIPQ13075 1403 aa28.55■■■□□ 2.16
CAPN1-206ENST00000526966 ZNF326Q5BKZ1 582 aaKnown RBP28.55■■■□□ 2.16
CAPN1-206ENST00000526966 NALCNQ8IZF0 1738 aa28.53■■■□□ 2.16
CAPN1-206ENST00000526966 ADGRL3Q9HAR2 1447 aa28.52■■■□□ 2.16
CAPN1-206ENST00000526966 SETD5Q9C0A6 1442 aa28.5■■■□□ 2.15
CAPN1-206ENST00000526966 MEX3CQ5U5Q3 659 aaKnown RBP28.47■■■□□ 2.15
CAPN1-206ENST00000526966 ZNF772Q68DY9 489 aaPredicted RBP28.47■■■□□ 2.15
CAPN1-206ENST00000526966 HFM1A2PYH4 1435 aa28.43■■■□□ 2.14
CAPN1-206ENST00000526966 PTCH1Q13635 1447 aa28.43■■■□□ 2.14
CAPN1-206ENST00000526966 LAMC1P11047 1609 aa28.41■■■□□ 2.14
CAPN1-206ENST00000526966 PRAG1Q86YV5 1406 aa28.41■■■□□ 2.14
CAPN1-206ENST00000526966 PPLO60437 1756 aa28.4■■■□□ 2.14
CAPN1-206ENST00000526966 LRRC59Q96AG4 307 aaKnown RBP28.37■■■□□ 2.13
CAPN1-206ENST00000526966 C1orf167Q5SNV9 1468 aa28.36■■■□□ 2.13
CAPN1-206ENST00000526966 CDK12Q9NYV4 1490 aaPredicted RBP28.36■■■□□ 2.13
CAPN1-206ENST00000526966 NUTM2BA6NNL0 878 aaPredicted RBP28.36■■■□□ 2.13
CAPN1-206ENST00000526966 NUTM2EB1AL46 878 aaPredicted RBP28.36■■■□□ 2.13
CAPN1-206ENST00000526966 NUTM2AQ8IVF1 878 aaPredicted RBP28.36■■■□□ 2.13
CAPN1-206ENST00000526966 PNPLA6Q8IY17 1366 aa28.36■■■□□ 2.13
CAPN1-206ENST00000526966 VGFO15240 615 aaPredicted RBP28.35■■■□□ 2.13
CAPN1-206ENST00000526966 ROBO2Q9HCK4 1378 aa28.34■■■□□ 2.13
CAPN1-206ENST00000526966 RPGRIP1LQ68CZ1 1315 aa28.33■■■□□ 2.13
CAPN1-206ENST00000526966 DDX17Q92841 729 aaKnown RBP28.32■■■□□ 2.12
CAPN1-206ENST00000526966 TRIM52Q96A61 297 aa28.32■■■□□ 2.12
CAPN1-206ENST00000526966 RXRBP28702 533 aa28.31■■■□□ 2.12
CAPN1-206ENST00000526966 AFF2P51816 1311 aa28.31■■■□□ 2.12
CAPN1-206ENST00000526966 UPF1Q92900 1129 aaKnown RBP eCLIP28.29■■■□□ 2.12
CAPN1-206ENST00000526966 SLC4A1APQ9BWU0 796 aaKnown RBP28.29■■■□□ 2.12
CAPN1-206ENST00000526966 SOS2Q07890 1332 aaPredicted RBP28.24■■■□□ 2.11
CAPN1-206ENST00000526966 CDC42BPGQ6DT37 1551 aa28.23■■■□□ 2.11
CAPN1-206ENST00000526966 IFT172Q9UG01 1749 aa28.23■■■□□ 2.11
CAPN1-206ENST00000526966 ORAI2Q96SN7 254 aa28.22■■■□□ 2.11
CAPN1-206ENST00000526966 C8orf37Q96NL8 207 aa28.21■■■□□ 2.11
CAPN1-206ENST00000526966 COL22A1Q8NFW1 1626 aaPredicted RBP28.21■■■□□ 2.11
CAPN1-206ENST00000526966 RGS12O14924 1447 aa28.19■■■□□ 2.1
CAPN1-206ENST00000526966 SPATA31E1Q6ZUB1 1445 aa28.17■■■□□ 2.1
CAPN1-206ENST00000526966 RBM6P78332 1123 aaKnown RBP28.16■■■□□ 2.1
CAPN1-206ENST00000526966 CCDC144AA2RUR9 1427 aa28.16■■■□□ 2.1
CAPN1-206ENST00000526966 TECPR2O15040 1411 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms