RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 RIMS2Q9UQ26 1411 aa24.26■■□□□ 1.47
LSM1-205ENST00000523511 ZNF326Q5BKZ1 582 aaKnown RBP24.25■■□□□ 1.47
LSM1-205ENST00000523511 KCNA6P17658 529 aa24.23■■□□□ 1.47
LSM1-205ENST00000523511 PLEKHG1Q9ULL1 1385 aa24.21■■□□□ 1.47
LSM1-205ENST00000523511 TBX22Q9Y458 520 aa24.2■■□□□ 1.46
LSM1-205ENST00000523511 ZFYVE9O95405 1425 aa24.18■■□□□ 1.46
LSM1-205ENST00000523511 TMEM131LA2VDJ0 1609 aa24.18■■□□□ 1.46
LSM1-205ENST00000523511 SCAF1Q9H7N4 1312 aaKnown RBP24.18■■□□□ 1.46
LSM1-205ENST00000523511 SETD5Q9C0A6 1442 aa24.17■■□□□ 1.46
LSM1-205ENST00000523511 NUTM2DQ5VT03 806 aaPredicted RBP24.16■■□□□ 1.46
LSM1-205ENST00000523511 PROSER2Q86WR7 435 aaPredicted RBP24.16■■□□□ 1.46
LSM1-205ENST00000523511 MPHOSPH9Q99550 1183 aa24.16■■□□□ 1.46
LSM1-205ENST00000523511 PIP4K2BP78356 416 aa24.15■■□□□ 1.46
LSM1-205ENST00000523511 LRRC7Q96NW7 1537 aa24.14■■□□□ 1.45
LSM1-205ENST00000523511 SENP3Q9H4L4 574 aaPredicted RBP24.13■■□□□ 1.45
LSM1-205ENST00000523511 VGFO15240 615 aaPredicted RBP24.11■■□□□ 1.45
LSM1-205ENST00000523511 RPGRIP1LQ68CZ1 1315 aa24.1■■□□□ 1.45
LSM1-205ENST00000523511 TRPM2O94759 1503 aa24.1■■□□□ 1.45
LSM1-205ENST00000523511 SPHKAPQ2M3C7 1700 aa24.1■■□□□ 1.45
LSM1-205ENST00000523511 PIK3R4Q99570 1358 aa24.08■■□□□ 1.45
LSM1-205ENST00000523511 HRCP23327 699 aa24.07■■□□□ 1.44
LSM1-205ENST00000523511 FOXD1Q16676 465 aa24.06■■□□□ 1.44
LSM1-205ENST00000523511 TMEM94Q12767 1356 aa24.05■■□□□ 1.44
LSM1-205ENST00000523511 CCDC144AA2RUR9 1427 aa24.04■■□□□ 1.44
LSM1-205ENST00000523511 RAB3GAP2Q9H2M9 1393 aa24.03■■□□□ 1.44
LSM1-205ENST00000523511 NKTRP30414 1462 aaKnown RBP24.02■■□□□ 1.44
LSM1-205ENST00000523511 C14orf37Q86TY3 774 aa24.02■■□□□ 1.44
LSM1-205ENST00000523511 AMOTL2Q9Y2J4 779 aa24.01■■□□□ 1.43
LSM1-205ENST00000523511 MSH6P52701 1360 aa24.01■■□□□ 1.43
LSM1-205ENST00000523511 ADAMTS13Q76LX8 1427 aa24.01■■□□□ 1.43
LSM1-205ENST00000523511 DIP2AQ14689 1571 aa24■■□□□ 1.43
LSM1-205ENST00000523511 MYO5BQ9ULV0 1848 aa24■■□□□ 1.43
LSM1-205ENST00000523511 CLTCL1P53675 1640 aa23.99■■□□□ 1.43
LSM1-205ENST00000523511 NCOA3Q9Y6Q9 1424 aa23.99■■□□□ 1.43
LSM1-205ENST00000523511 STRCP1A6NGW2 1772 aa23.98■■□□□ 1.43
LSM1-205ENST00000523511 RBM33Q96EV2 1170 aaKnown RBP23.97■■□□□ 1.43
LSM1-205ENST00000523511 HSPA1LP34931 641 aa23.96■■□□□ 1.43
LSM1-205ENST00000523511 RGL3Q3MIN7 710 aa23.96■■□□□ 1.43
LSM1-205ENST00000523511 KIF1BO60333 1816 aa23.94■■□□□ 1.42
LSM1-205ENST00000523511 C19orf44Q9H6X5 657 aa23.94■■□□□ 1.42
LSM1-205ENST00000523511 NWD1Q149M9 1564 aa23.94■■□□□ 1.42
LSM1-205ENST00000523511 ATF3P18847 181 aa23.93■■□□□ 1.42
LSM1-205ENST00000523511 CADPS2Q86UW7 1296 aa23.93■■□□□ 1.42
LSM1-205ENST00000523511 SETBP1Q9Y6X0 1596 aa23.91■■□□□ 1.42
LSM1-205ENST00000523511 NEXMIFQ5QGS0 1516 aa23.91■■□□□ 1.42
LSM1-205ENST00000523511 SLAIN2Q9P270 581 aa23.91■■□□□ 1.42
LSM1-205ENST00000523511 ANKRD30BQ9BXX2 1392 aa23.91■■□□□ 1.42
LSM1-205ENST00000523511 FAM135BQ49AJ0 1406 aa23.89■■□□□ 1.41
LSM1-205ENST00000523511 METP08581 1390 aa23.88■■□□□ 1.41
LSM1-205ENST00000523511 CHD2O14647 1828 aaKnown RBP23.87■■□□□ 1.41
LSM1-205ENST00000523511 DISP3Q9P2K9 1392 aa23.86■■□□□ 1.41
LSM1-205ENST00000523511 PTPRUQ92729 1446 aa23.84■■□□□ 1.41
LSM1-205ENST00000523511 SPATA31E1Q6ZUB1 1445 aa23.83■■□□□ 1.4
LSM1-205ENST00000523511 ALKQ9UM73 1620 aa23.81■■□□□ 1.4
LSM1-205ENST00000523511 ADGRF5Q8IZF2 1346 aa23.81■■□□□ 1.4
LSM1-205ENST00000523511 STAC3Q96MF2 364 aa23.8■■□□□ 1.4
LSM1-205ENST00000523511 XIRP1Q702N8 1843 aaKnown RBP23.77■■□□□ 1.4
LSM1-205ENST00000523511 NRXN3Q9Y4C0 1643 aa23.77■■□□□ 1.4
LSM1-205ENST00000523511 DCCP43146 1447 aa23.75■■□□□ 1.39
LSM1-205ENST00000523511 PPLO60437 1756 aa23.71■■□□□ 1.39
LSM1-205ENST00000523511 PTCH1Q13635 1447 aa23.71■■□□□ 1.39
LSM1-205ENST00000523511 C14orf93Q9H972 538 aaKnown RBP23.71■■□□□ 1.39
LSM1-205ENST00000523511 STK26Q9P289 416 aa23.71■■□□□ 1.39
LSM1-205ENST00000523511 DCAF11Q8TEB1 546 aa23.7■■□□□ 1.38
LSM1-205ENST00000523511 PHF23Q9BUL5 403 aaPredicted RBP23.7■■□□□ 1.38
LSM1-205ENST00000523511 XRN1Q8IZH2 1706 aaKnown RBP23.7■■□□□ 1.38
LSM1-205ENST00000523511 ADGRL3Q9HAR2 1447 aa23.68■■□□□ 1.38
LSM1-205ENST00000523511 DHX57Q6P158 1386 aaKnown RBP23.68■■□□□ 1.38
LSM1-205ENST00000523511 TMEM132EQ6IEE7 984 aa23.68■■□□□ 1.38
LSM1-205ENST00000523511 KDM2AQ9Y2K7 1162 aa23.68■■□□□ 1.38
LSM1-205ENST00000523511 PIK3C2GO75747 1445 aa23.67■■□□□ 1.38
LSM1-205ENST00000523511 ROBO2Q9HCK4 1378 aa23.67■■□□□ 1.38
LSM1-205ENST00000523511 PRAG1Q86YV5 1406 aa23.67■■□□□ 1.38
LSM1-205ENST00000523511 LRPPRCP42704 1394 aaKnown RBP23.66■■□□□ 1.38
LSM1-205ENST00000523511 ABCC11Q96J66 1382 aa23.66■■□□□ 1.38
LSM1-205ENST00000523511 SIRT1Q96EB6 747 aa23.66■■□□□ 1.38
LSM1-205ENST00000523511 ROBO1Q9Y6N7 1651 aa23.66■■□□□ 1.38
LSM1-205ENST00000523511 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.65■■□□□ 1.38
LSM1-205ENST00000523511 MYOM2P54296 1465 aa23.65■■□□□ 1.38
LSM1-205ENST00000523511 CFAP70Q5T0N1 1121 aa23.65■■□□□ 1.38
LSM1-205ENST00000523511 BRINP3Q76B58 766 aa23.65■■□□□ 1.38
LSM1-205ENST00000523511 JCADQ9P266 1359 aa23.62■■□□□ 1.37
LSM1-205ENST00000523511 TRIM26Q12899 539 aaPredicted RBP23.61■■□□□ 1.37
LSM1-205ENST00000523511 WAPLQ7Z5K2 1190 aa23.6■■□□□ 1.37
LSM1-205ENST00000523511 MST1RQ04912 1400 aa23.59■■□□□ 1.37
LSM1-205ENST00000523511 YTHDC2Q9H6S0 1430 aaKnown RBP23.59■■□□□ 1.37
LSM1-205ENST00000523511 NRXN1Q9ULB1 1477 aa23.59■■□□□ 1.37
LSM1-205ENST00000523511 TECPR2O15040 1411 aa23.59■■□□□ 1.37
LSM1-205ENST00000523511 LRRC59Q96AG4 307 aaKnown RBP23.58■■□□□ 1.37
LSM1-205ENST00000523511 POGKQ9P215 609 aa23.58■■□□□ 1.37
LSM1-205ENST00000523511 IFT172Q9UG01 1749 aa23.57■■□□□ 1.36
LSM1-205ENST00000523511 SETD1AO15047 1707 aaKnown RBP23.56■■□□□ 1.36
LSM1-205ENST00000523511 MED1Q15648 1581 aaPredicted RBP23.55■■□□□ 1.36
LSM1-205ENST00000523511 SPATA31A6Q5VVP1 1343 aa23.55■■□□□ 1.36
LSM1-205ENST00000523511 C1orf167Q5SNV9 1468 aa23.54■■□□□ 1.36
LSM1-205ENST00000523511 ESCO1Q5FWF5 840 aa23.53■■□□□ 1.36
LSM1-205ENST00000523511 PRAM1Q96QH2 718 aa23.52■■□□□ 1.36
LSM1-205ENST00000523511 PHLPP1O60346 1717 aa23.52■■□□□ 1.36
LSM1-205ENST00000523511 LAMC1P11047 1609 aa23.51■■□□□ 1.35
LSM1-205ENST00000523511 ILDR2Q71H61 639 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms