RNA–Protein interactions for RNA: ENST00000521621.5

CLK4-209, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 2,780 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-209ENST00000521621 RIMS2Q9UQ26 1411 aa14.12□□□□□ -0.15
CLK4-209ENST00000521621 IFT172Q9UG01 1749 aa14.12□□□□□ -0.15
CLK4-209ENST00000521621 MPHOSPH9Q99550 1183 aa14.11□□□□□ -0.15
CLK4-209ENST00000521621 SLC4A1APQ9BWU0 796 aaKnown RBP14.11□□□□□ -0.15
CLK4-209ENST00000521621 RPGRIP1LQ68CZ1 1315 aa14.11□□□□□ -0.15
CLK4-209ENST00000521621 PPLO60437 1756 aa14.1□□□□□ -0.15
CLK4-209ENST00000521621 PIK3R4Q99570 1358 aa14.1□□□□□ -0.15
CLK4-209ENST00000521621 LTKP29376 864 aa14.09□□□□□ -0.15
CLK4-209ENST00000521621 TRIM52Q96A61 297 aa14.09□□□□□ -0.15
CLK4-209ENST00000521621 NRXN3Q9Y4C0 1643 aa14.08□□□□□ -0.15
CLK4-209ENST00000521621 STRCP1A6NGW2 1772 aa14.08□□□□□ -0.16
CLK4-209ENST00000521621 TXNDC2Q86VQ3 553 aa14.08□□□□□ -0.16
CLK4-209ENST00000521621 SPATA31E1Q6ZUB1 1445 aa14.08□□□□□ -0.16
CLK4-209ENST00000521621 PRAG1Q86YV5 1406 aa14.08□□□□□ -0.16
CLK4-209ENST00000521621 CHD2O14647 1828 aaKnown RBP14.08□□□□□ -0.16
CLK4-209ENST00000521621 NKTRP30414 1462 aaKnown RBP14.08□□□□□ -0.16
CLK4-209ENST00000521621 STAG3Q9UJ98 1225 aa14.07□□□□□ -0.16
CLK4-209ENST00000521621 CERKQ8TCT0 537 aa14.06□□□□□ -0.16
CLK4-209ENST00000521621 SETD1AO15047 1707 aaKnown RBP14.06□□□□□ -0.16
CLK4-209ENST00000521621 CCDC144AA2RUR9 1427 aa14.06□□□□□ -0.16
CLK4-209ENST00000521621 NCOA3Q9Y6Q9 1424 aa14.05□□□□□ -0.16
CLK4-209ENST00000521621 ADAMTS13Q76LX8 1427 aa14.05□□□□□ -0.16
CLK4-209ENST00000521621 ANKRD30BQ9BXX2 1392 aa14.04□□□□□ -0.16
CLK4-209ENST00000521621 TBX22Q9Y458 520 aa14.04□□□□□ -0.16
CLK4-209ENST00000521621 XRN1Q8IZH2 1706 aaKnown RBP14.03□□□□□ -0.16
CLK4-209ENST00000521621 MYOM2P54296 1465 aa14.03□□□□□ -0.16
CLK4-209ENST00000521621 NRXN1Q9ULB1 1477 aa14.03□□□□□ -0.16
CLK4-209ENST00000521621 FBXO41Q8TF61 875 aa14.02□□□□□ -0.16
CLK4-209ENST00000521621 LRRC7Q96NW7 1537 aa14.02□□□□□ -0.16
CLK4-209ENST00000521621 XIRP1Q702N8 1843 aaKnown RBP14.02□□□□□ -0.17
CLK4-209ENST00000521621 STAC3Q96MF2 364 aa14.01□□□□□ -0.17
CLK4-209ENST00000521621 LAMC1P11047 1609 aa14.01□□□□□ -0.17
CLK4-209ENST00000521621 ZNF335Q9H4Z2 1342 aaPredicted RBP14.01□□□□□ -0.17
CLK4-209ENST00000521621 KCNA6P17658 529 aa14□□□□□ -0.17
CLK4-209ENST00000521621 TRIM26Q12899 539 aaPredicted RBP13.99□□□□□ -0.17
CLK4-209ENST00000521621 VGFO15240 615 aaPredicted RBP13.98□□□□□ -0.17
CLK4-209ENST00000521621 KNDC1Q76NI1 1749 aa13.97□□□□□ -0.17
CLK4-209ENST00000521621 ALKQ9UM73 1620 aa13.97□□□□□ -0.17
CLK4-209ENST00000521621 PIK3C2GO75747 1445 aa13.95□□□□□ -0.18
CLK4-209ENST00000521621 PPP1R15AO75807 674 aaPredicted RBP13.94□□□□□ -0.18
CLK4-209ENST00000521621 PTCH1Q13635 1447 aa13.94□□□□□ -0.18
CLK4-209ENST00000521621 KIAA1210Q9ULL0 1709 aa13.93□□□□□ -0.18
CLK4-209ENST00000521621 CHGAP10645 457 aaKnown RBP13.93□□□□□ -0.18
CLK4-209ENST00000521621 TECPR2O15040 1411 aa13.92□□□□□ -0.18
CLK4-209ENST00000521621 DCCP43146 1447 aa13.92□□□□□ -0.18
CLK4-209ENST00000521621 PTPRUQ92729 1446 aa13.92□□□□□ -0.18
CLK4-209ENST00000521621 FOXD1Q16676 465 aa13.91□□□□□ -0.18
CLK4-209ENST00000521621 ZNF326Q5BKZ1 582 aaKnown RBP13.91□□□□□ -0.18
CLK4-209ENST00000521621 DLC1Q96QB1 1528 aa13.88□□□□□ -0.19
CLK4-209ENST00000521621 SIRT1Q96EB6 747 aa13.88□□□□□ -0.19
CLK4-209ENST00000521621 SLC26A8Q96RN1 970 aa13.88□□□□□ -0.19
CLK4-209ENST00000521621 ASXL1Q8IXJ9 1541 aa13.88□□□□□ -0.19
CLK4-209ENST00000521621 METP08581 1390 aa13.87□□□□□ -0.19
CLK4-209ENST00000521621 DHX57Q6P158 1386 aaKnown RBP13.87□□□□□ -0.19
CLK4-209ENST00000521621 TMEM94Q12767 1356 aa13.86□□□□□ -0.19
CLK4-209ENST00000521621 ILDR1Q86SU0 546 aaPredicted RBP13.86□□□□□ -0.19
CLK4-209ENST00000521621 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.85□□□□□ -0.19
CLK4-209ENST00000521621 ADGRB1O14514 1584 aa13.85□□□□□ -0.19
CLK4-209ENST00000521621 LRPPRCP42704 1394 aaKnown RBP13.85□□□□□ -0.19
CLK4-209ENST00000521621 ABCC11Q96J66 1382 aa13.85□□□□□ -0.19
CLK4-209ENST00000521621 TOM1O60784 492 aa13.85□□□□□ -0.19
CLK4-209ENST00000521621 C14orf93Q9H972 538 aaKnown RBP13.85□□□□□ -0.19
CLK4-209ENST00000521621 FAM135BQ49AJ0 1406 aa13.85□□□□□ -0.19
CLK4-209ENST00000521621 ADGRF5Q8IZF2 1346 aa13.84□□□□□ -0.19
CLK4-209ENST00000521621 NALCNQ8IZF0 1738 aa13.83□□□□□ -0.2
CLK4-209ENST00000521621 AMOTL2Q9Y2J4 779 aa13.83□□□□□ -0.2
CLK4-209ENST00000521621 ADGRL3Q9HAR2 1447 aa13.83□□□□□ -0.2
CLK4-209ENST00000521621 CDC42BPGQ6DT37 1551 aa13.82□□□□□ -0.2
CLK4-209ENST00000521621 MSH6P52701 1360 aa13.82□□□□□ -0.2
CLK4-209ENST00000521621 PROSER2Q86WR7 435 aaPredicted RBP13.82□□□□□ -0.2
CLK4-209ENST00000521621 BCANQ96GW7 911 aa13.82□□□□□ -0.2
CLK4-209ENST00000521621 ADGRB2O60241 1585 aa13.81□□□□□ -0.2
CLK4-209ENST00000521621 CLSPNQ9HAW4 1339 aa13.8□□□□□ -0.2
CLK4-209ENST00000521621 NUTM2DQ5VT03 806 aaPredicted RBP13.8□□□□□ -0.2
CLK4-209ENST00000521621 YTHDC2Q9H6S0 1430 aaKnown RBP13.8□□□□□ -0.2
CLK4-209ENST00000521621 C19orf44Q9H6X5 657 aa13.79□□□□□ -0.2
CLK4-209ENST00000521621 UBAP1LF5GYI3 381 aa13.78□□□□□ -0.2
CLK4-209ENST00000521621 AHDC1Q5TGY3 1603 aaPredicted RBP13.78□□□□□ -0.2
CLK4-209ENST00000521621 RGL3Q3MIN7 710 aa13.77□□□□□ -0.2
CLK4-209ENST00000521621 ROBO1Q9Y6N7 1651 aa13.77□□□□□ -0.2
CLK4-209ENST00000521621 ROBO2Q9HCK4 1378 aa13.77□□□□□ -0.21
CLK4-209ENST00000521621 CADPS2Q86UW7 1296 aa13.76□□□□□ -0.21
CLK4-209ENST00000521621 TRPM1Q7Z4N2 1603 aa13.76□□□□□ -0.21
CLK4-209ENST00000521621 NHSL1Q5SYE7 1610 aa13.76□□□□□ -0.21
CLK4-209ENST00000521621 ARHGEF28Q8N1W1 1705 aaKnown RBP13.75□□□□□ -0.21
CLK4-209ENST00000521621 FMN2Q9NZ56 1722 aa13.75□□□□□ -0.21
CLK4-209ENST00000521621 MST1RQ04912 1400 aa13.75□□□□□ -0.21
CLK4-209ENST00000521621 DCAF11Q8TEB1 546 aa13.73□□□□□ -0.21
CLK4-209ENST00000521621 TIMELESSQ9UNS1 1208 aa13.72□□□□□ -0.21
CLK4-209ENST00000521621 KIF1AQ12756 1690 aa13.71□□□□□ -0.21
CLK4-209ENST00000521621 SLAIN2Q9P270 581 aa13.71□□□□□ -0.21
CLK4-209ENST00000521621 COL16A1Q07092 1604 aaPredicted RBP13.71□□□□□ -0.22
CLK4-209ENST00000521621 GPRASP1Q5JY77 1395 aa13.71□□□□□ -0.22
CLK4-209ENST00000521621 CFAP70Q5T0N1 1121 aa13.7□□□□□ -0.22
CLK4-209ENST00000521621 PHLPP1O60346 1717 aa13.69□□□□□ -0.22
CLK4-209ENST00000521621 SHPRHQ149N8 1683 aa13.69□□□□□ -0.22
CLK4-209ENST00000521621 ATF3P18847 181 aa13.69□□□□□ -0.22
CLK4-209ENST00000521621 ANKARQ7Z5J8 1434 aa13.69□□□□□ -0.22
CLK4-209ENST00000521621 C1orf167Q5SNV9 1468 aa13.69□□□□□ -0.22
CLK4-209ENST00000521621 EIF3AQ14152 1382 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms