RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 HDGFP51858 240 aaKnown RBP14.53□□□□□ -0.08
RNF4-221ENST00000513643 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.53□□□□□ -0.08
RNF4-221ENST00000513643 SPHKAPQ2M3C7 1700 aa14.52□□□□□ -0.08
RNF4-221ENST00000513643 RAB3GAP2Q9H2M9 1393 aa14.52□□□□□ -0.08
RNF4-221ENST00000513643 TBX22Q9Y458 520 aa14.51□□□□□ -0.09
RNF4-221ENST00000513643 MYO5BQ9ULV0 1848 aa14.5□□□□□ -0.09
RNF4-221ENST00000513643 STRCP1A6NGW2 1772 aa14.5□□□□□ -0.09
RNF4-221ENST00000513643 ADAMTS13Q76LX8 1427 aa14.49□□□□□ -0.09
RNF4-221ENST00000513643 CLTCL1P53675 1640 aa14.49□□□□□ -0.09
RNF4-221ENST00000513643 CHGAP10645 457 aaKnown RBP14.49□□□□□ -0.09
RNF4-221ENST00000513643 KCNA6P17658 529 aa14.49□□□□□ -0.09
RNF4-221ENST00000513643 FOXD1Q16676 465 aa14.49□□□□□ -0.09
RNF4-221ENST00000513643 SLC26A8Q96RN1 970 aa14.49□□□□□ -0.09
RNF4-221ENST00000513643 LRRC7Q96NW7 1537 aa14.49□□□□□ -0.09
RNF4-221ENST00000513643 RPGRIP1LQ68CZ1 1315 aa14.45□□□□□ -0.1
RNF4-221ENST00000513643 NUTM2DQ5VT03 806 aaPredicted RBP14.45□□□□□ -0.1
RNF4-221ENST00000513643 SPATA31E1Q6ZUB1 1445 aa14.45□□□□□ -0.1
RNF4-221ENST00000513643 NEXMIFQ5QGS0 1516 aa14.45□□□□□ -0.1
RNF4-221ENST00000513643 PIK3R4Q99570 1358 aa14.45□□□□□ -0.1
RNF4-221ENST00000513643 PPP1R15AO75807 674 aaPredicted RBP14.43□□□□□ -0.1
RNF4-221ENST00000513643 ALKQ9UM73 1620 aa14.43□□□□□ -0.1
RNF4-221ENST00000513643 NWD1Q149M9 1564 aa14.43□□□□□ -0.1
RNF4-221ENST00000513643 SETBP1Q9Y6X0 1596 aa14.43□□□□□ -0.1
RNF4-221ENST00000513643 ANKRD30BQ9BXX2 1392 aa14.42□□□□□ -0.1
RNF4-221ENST00000513643 CCDC144AA2RUR9 1427 aa14.41□□□□□ -0.1
RNF4-221ENST00000513643 ZNF326Q5BKZ1 582 aaKnown RBP14.41□□□□□ -0.1
RNF4-221ENST00000513643 DIP2AQ14689 1571 aa14.41□□□□□ -0.1
RNF4-221ENST00000513643 NRXN3Q9Y4C0 1643 aa14.41□□□□□ -0.1
RNF4-221ENST00000513643 NKTRP30414 1462 aaKnown RBP14.4□□□□□ -0.1
RNF4-221ENST00000513643 UBAP1LF5GYI3 381 aa14.4□□□□□ -0.1
RNF4-221ENST00000513643 VGFO15240 615 aaPredicted RBP14.4□□□□□ -0.1
RNF4-221ENST00000513643 PTPRUQ92729 1446 aa14.4□□□□□ -0.1
RNF4-221ENST00000513643 TMEM94Q12767 1356 aa14.39□□□□□ -0.11
RNF4-221ENST00000513643 TOM1O60784 492 aa14.39□□□□□ -0.11
RNF4-221ENST00000513643 NCOA3Q9Y6Q9 1424 aa14.39□□□□□ -0.11
RNF4-221ENST00000513643 CHD2O14647 1828 aaKnown RBP14.38□□□□□ -0.11
RNF4-221ENST00000513643 KIF1BO60333 1816 aa14.38□□□□□ -0.11
RNF4-221ENST00000513643 METP08581 1390 aa14.38□□□□□ -0.11
RNF4-221ENST00000513643 BCANQ96GW7 911 aa14.38□□□□□ -0.11
RNF4-221ENST00000513643 XIRP1Q702N8 1843 aaKnown RBP14.37□□□□□ -0.11
RNF4-221ENST00000513643 PROSER2Q86WR7 435 aaPredicted RBP14.36□□□□□ -0.11
RNF4-221ENST00000513643 SENP3Q9H4L4 574 aaPredicted RBP14.36□□□□□ -0.11
RNF4-221ENST00000513643 AMOTL2Q9Y2J4 779 aa14.36□□□□□ -0.11
RNF4-221ENST00000513643 ADGRF5Q8IZF2 1346 aa14.35□□□□□ -0.11
RNF4-221ENST00000513643 PRAG1Q86YV5 1406 aa14.34□□□□□ -0.11
RNF4-221ENST00000513643 RBM33Q96EV2 1170 aaKnown RBP14.33□□□□□ -0.12
RNF4-221ENST00000513643 NRXN1Q9ULB1 1477 aa14.32□□□□□ -0.12
RNF4-221ENST00000513643 PPLO60437 1756 aa14.32□□□□□ -0.12
RNF4-221ENST00000513643 RGL3Q3MIN7 710 aa14.32□□□□□ -0.12
RNF4-221ENST00000513643 XRN1Q8IZH2 1706 aaKnown RBP14.31□□□□□ -0.12
RNF4-221ENST00000513643 FAM135BQ49AJ0 1406 aa14.31□□□□□ -0.12
RNF4-221ENST00000513643 SETD1AO15047 1707 aaKnown RBP14.3□□□□□ -0.12
RNF4-221ENST00000513643 PIK3C2GO75747 1445 aa14.3□□□□□ -0.12
RNF4-221ENST00000513643 C19orf44Q9H6X5 657 aa14.29□□□□□ -0.12
RNF4-221ENST00000513643 IFT172Q9UG01 1749 aa14.29□□□□□ -0.12
RNF4-221ENST00000513643 HSPA1LP34931 641 aa14.28□□□□□ -0.12
RNF4-221ENST00000513643 MYOM2P54296 1465 aa14.28□□□□□ -0.12
RNF4-221ENST00000513643 PIP4K2BP78356 416 aa14.28□□□□□ -0.12
RNF4-221ENST00000513643 DHX57Q6P158 1386 aaKnown RBP14.28□□□□□ -0.12
RNF4-221ENST00000513643 STAC3Q96MF2 364 aa14.28□□□□□ -0.12
RNF4-221ENST00000513643 C14orf93Q9H972 538 aaKnown RBP14.28□□□□□ -0.12
RNF4-221ENST00000513643 MSH6P52701 1360 aa14.27□□□□□ -0.12
RNF4-221ENST00000513643 PTCH1Q13635 1447 aa14.26□□□□□ -0.13
RNF4-221ENST00000513643 ROBO2Q9HCK4 1378 aa14.26□□□□□ -0.13
RNF4-221ENST00000513643 TRIM26Q12899 539 aaPredicted RBP14.26□□□□□ -0.13
RNF4-221ENST00000513643 SLAIN2Q9P270 581 aa14.26□□□□□ -0.13
RNF4-221ENST00000513643 TECPR2O15040 1411 aa14.25□□□□□ -0.13
RNF4-221ENST00000513643 ABCC11Q96J66 1382 aa14.25□□□□□ -0.13
RNF4-221ENST00000513643 DCCP43146 1447 aa14.24□□□□□ -0.13
RNF4-221ENST00000513643 CADPS2Q86UW7 1296 aa14.24□□□□□ -0.13
RNF4-221ENST00000513643 SIRT1Q96EB6 747 aa14.24□□□□□ -0.13
RNF4-221ENST00000513643 LRPPRCP42704 1394 aaKnown RBP14.23□□□□□ -0.13
RNF4-221ENST00000513643 ASXL1Q8IXJ9 1541 aa14.23□□□□□ -0.13
RNF4-221ENST00000513643 ADGRL3Q9HAR2 1447 aa14.22□□□□□ -0.13
RNF4-221ENST00000513643 CFAP70Q5T0N1 1121 aa14.21□□□□□ -0.13
RNF4-221ENST00000513643 TMEM132EQ6IEE7 984 aa14.21□□□□□ -0.13
RNF4-221ENST00000513643 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.21□□□□□ -0.14
RNF4-221ENST00000513643 SCAF1Q9H7N4 1312 aaKnown RBP14.2□□□□□ -0.14
RNF4-221ENST00000513643 DCAF11Q8TEB1 546 aa14.2□□□□□ -0.14
RNF4-221ENST00000513643 ATF3P18847 181 aa14.19□□□□□ -0.14
RNF4-221ENST00000513643 ADGRB1O14514 1584 aa14.18□□□□□ -0.14
RNF4-221ENST00000513643 MST1RQ04912 1400 aa14.18□□□□□ -0.14
RNF4-221ENST00000513643 YTHDC2Q9H6S0 1430 aaKnown RBP14.18□□□□□ -0.14
RNF4-221ENST00000513643 C14orf37Q86TY3 774 aa14.17□□□□□ -0.14
RNF4-221ENST00000513643 BRINP3Q76B58 766 aa14.16□□□□□ -0.14
RNF4-221ENST00000513643 WAPLQ7Z5K2 1190 aa14.16□□□□□ -0.14
RNF4-221ENST00000513643 ROBO1Q9Y6N7 1651 aa14.16□□□□□ -0.14
RNF4-221ENST00000513643 PLEKHH1Q9ULM0 1364 aa14.15□□□□□ -0.14
RNF4-221ENST00000513643 STK26Q9P289 416 aa14.15□□□□□ -0.14
RNF4-221ENST00000513643 KDM2AQ9Y2K7 1162 aa14.15□□□□□ -0.14
RNF4-221ENST00000513643 SIN3AQ96ST3 1273 aa14.14□□□□□ -0.15
RNF4-221ENST00000513643 NALCNQ8IZF0 1738 aa14.14□□□□□ -0.15
RNF4-221ENST00000513643 LAMC1P11047 1609 aa14.14□□□□□ -0.15
RNF4-221ENST00000513643 C1orf167Q5SNV9 1468 aa14.13□□□□□ -0.15
RNF4-221ENST00000513643 KNDC1Q76NI1 1749 aa14.13□□□□□ -0.15
RNF4-221ENST00000513643 DLC1Q96QB1 1528 aa14.13□□□□□ -0.15
RNF4-221ENST00000513643 L3MBTL2Q969R5 705 aa14.12□□□□□ -0.15
RNF4-221ENST00000513643 AHDC1Q5TGY3 1603 aaPredicted RBP14.12□□□□□ -0.15
RNF4-221ENST00000513643 CDC42BPGQ6DT37 1551 aa14.1□□□□□ -0.15
RNF4-221ENST00000513643 PRAM1Q96QH2 718 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms