RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 PTGDRQ13258 359 aa9.04□□□□□ -0.96
NUP54-212ENST00000513248 NKX2-3Q8TAU0 364 aa9.04□□□□□ -0.96
NUP54-212ENST00000513248 DNAJB2P25686 324 aa9.03□□□□□ -0.96
NUP54-212ENST00000513248 COPS2P61201 443 aa9.03□□□□□ -0.96
NUP54-212ENST00000513248 BCANQ96GW7 911 aa9.03□□□□□ -0.96
NUP54-212ENST00000513248 MLLT3P42568 568 aaPredicted RBP9.02□□□□□ -0.97
NUP54-212ENST00000513248 PCDHB3Q9Y5E6 796 aa9.02□□□□□ -0.97
NUP54-212ENST00000513248 RBM46Q8TBY0 533 aaKnown RBP9.01□□□□□ -0.97
NUP54-212ENST00000513248 TMEM134Q9H6X4 195 aa9.01□□□□□ -0.97
NUP54-212ENST00000513248 PDZRN3Q9UPQ7 1066 aa9□□□□□ -0.97
NUP54-212ENST00000513248 ADGRG1Q9Y653 693 aa9□□□□□ -0.97
NUP54-212ENST00000513248 SEMA3EO15041 775 aa8.98□□□□□ -0.97
NUP54-212ENST00000513248 BLOC1S3Q6QNY0 202 aa8.97□□□□□ -0.97
NUP54-212ENST00000513248 TESPA1A2RU30 521 aaPredicted RBP8.96□□□□□ -0.98
NUP54-212ENST00000513248 ACTN4O43707 911 aaKnown RBP8.96□□□□□ -0.98
NUP54-212ENST00000513248 KMT5BQ4FZB7 885 aa8.96□□□□□ -0.98
NUP54-212ENST00000513248 RCCD1A6NED2 376 aa8.95□□□□□ -0.98
NUP54-212ENST00000513248 RNF223E7ERA6 249 aa8.95□□□□□ -0.98
NUP54-212ENST00000513248 ANKLE1Q8NAG6 615 aa8.94□□□□□ -0.98
NUP54-212ENST00000513248 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.93□□□□□ -0.98
NUP54-212ENST00000513248 FCHSD2O94868 740 aa8.93□□□□□ -0.98
NUP54-212ENST00000513248 SLC19A1P41440 591 aa8.93□□□□□ -0.98
NUP54-212ENST00000513248 NUTM2FA1L443 756 aa8.92□□□□□ -0.98
NUP54-212ENST00000513248 CFHP08603 1231 aa8.92□□□□□ -0.98
NUP54-212ENST00000513248 TRIM67Q6ZTA4 783 aa8.91□□□□□ -0.98
NUP54-212ENST00000513248 TLL1O43897 1013 aa8.9□□□□□ -0.98
NUP54-212ENST00000513248 OATP04181 439 aa8.9□□□□□ -0.98
NUP54-212ENST00000513248 PRR20EP86478 221 aa8.9□□□□□ -0.98
NUP54-212ENST00000513248 PRR20CP86479 221 aa8.9□□□□□ -0.98
NUP54-212ENST00000513248 PRR20DP86480 221 aa8.9□□□□□ -0.98
NUP54-212ENST00000513248 PRR20BP86481 221 aa8.9□□□□□ -0.98
NUP54-212ENST00000513248 PRR20AP86496 221 aa8.9□□□□□ -0.98
NUP54-212ENST00000513248 SPRYD7Q5W111 196 aa8.9□□□□□ -0.98
NUP54-212ENST00000513248 SMYD5Q6GMV2 418 aa8.9□□□□□ -0.98
NUP54-212ENST00000513248 EMID1Q96A84 441 aaPredicted RBP8.9□□□□□ -0.98
NUP54-212ENST00000513248 NR1I2O75469 434 aa8.89□□□□□ -0.99
NUP54-212ENST00000513248 ADH1BP00325 375 aa8.89□□□□□ -0.99
NUP54-212ENST00000513248 ZNF598Q86UK7 904 aaKnown RBP8.89□□□□□ -0.99
NUP54-212ENST00000513248 SLC10A3P09131 477 aa8.88□□□□□ -0.99
NUP54-212ENST00000513248 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.88□□□□□ -0.99
NUP54-212ENST00000513248 PXYLP1Q8TE99 480 aa8.88□□□□□ -0.99
NUP54-212ENST00000513248 S1PR4O95977 384 aa8.87□□□□□ -0.99
NUP54-212ENST00000513248 FAM161AQ3B820 660 aa8.87□□□□□ -0.99
NUP54-212ENST00000513248 RSPH4AQ5TD94 716 aa8.87□□□□□ -0.99
NUP54-212ENST00000513248 ZNF787Q6DD87 383 aa8.87□□□□□ -0.99
NUP54-212ENST00000513248 DGAT1O75907 488 aa8.86□□□□□ -0.99
NUP54-212ENST00000513248 HIC1Q14526 733 aa8.86□□□□□ -0.99
NUP54-212ENST00000513248 PKDCCQ504Y2 493 aa8.84□□□□□ -0.99
NUP54-212ENST00000513248 LIAT1Q6ZQX7 453 aa8.84□□□□□ -0.99
NUP54-212ENST00000513248 METTL3Q86U44 580 aaKnown RBP8.84□□□□□ -0.99
NUP54-212ENST00000513248 RBM26Q5T8P6 1007 aaKnown RBP8.83□□□□□ -1
NUP54-212ENST00000513248 ZNF697Q5TEC3 545 aa8.83□□□□□ -1
NUP54-212ENST00000513248 SCUBE3Q8IX30 993 aa8.83□□□□□ -1
NUP54-212ENST00000513248 SLC6A16Q9GZN6 736 aa8.83□□□□□ -1
NUP54-212ENST00000513248 TULP1O00294 542 aaPredicted RBP8.82□□□□□ -1
NUP54-212ENST00000513248 PPEF1O14829 653 aaPredicted RBP8.82□□□□□ -1
NUP54-212ENST00000513248 MYT1Q01538 1121 aa8.82□□□□□ -1
NUP54-212ENST00000513248 GDF9O60383 454 aa8.81□□□□□ -1
NUP54-212ENST00000513248 LMOD2Q6P5Q4 547 aa8.81□□□□□ -1
NUP54-212ENST00000513248 SPSB2Q99619 263 aa8.79□□□□□ -1
NUP54-212ENST00000513248 GNPATO15228 680 aa8.78□□□□□ -1
NUP54-212ENST00000513248 DAXXQ9UER7 740 aaPredicted RBP8.78□□□□□ -1
NUP54-212ENST00000513248 PLA2G2CQ5R387 149 aa8.77□□□□□ -1.01
NUP54-212ENST00000513248 ZNF775Q96BV0 537 aaPredicted RBP8.77□□□□□ -1.01
NUP54-212ENST00000513248 RPIAP49247 311 aa8.76□□□□□ -1.01
NUP54-212ENST00000513248 PUS10Q3MIT2 529 aaKnown RBP8.76□□□□□ -1.01
NUP54-212ENST00000513248 GPIHBP1Q8IV16 184 aa8.76□□□□□ -1.01
NUP54-212ENST00000513248 FAM187AA6NFU0 413 aa8.75□□□□□ -1.01
NUP54-212ENST00000513248 GPR37O15354 613 aa8.75□□□□□ -1.01
NUP54-212ENST00000513248 MORN1Q5T089 497 aa8.75□□□□□ -1.01
NUP54-212ENST00000513248 SALL2Q9Y467 1007 aaPredicted RBP8.75□□□□□ -1.01
NUP54-212ENST00000513248 TNFRSF10AO00220 468 aa8.74□□□□□ -1.01
NUP54-212ENST00000513248 ATP6V1AP38606 617 aa8.74□□□□□ -1.01
NUP54-212ENST00000513248 THAP11Q96EK4 314 aa8.74□□□□□ -1.01
NUP54-212ENST00000513248 SULF1Q8IWU6 871 aa8.73□□□□□ -1.01
NUP54-212ENST00000513248 PKD2L1Q9P0L9 805 aa8.73□□□□□ -1.01
NUP54-212ENST00000513248 FECHP22830 423 aa8.72□□□□□ -1.01
NUP54-212ENST00000513248 CRIPAKQ8N1N5 446 aa8.72□□□□□ -1.01
NUP54-212ENST00000513248 RDH13Q8NBN7 331 aa8.72□□□□□ -1.01
NUP54-212ENST00000513248 FMNL1O95466 1100 aaPredicted RBP8.71□□□□□ -1.02
NUP54-212ENST00000513248 GCGRP47871 477 aa8.71□□□□□ -1.02
NUP54-212ENST00000513248 FUT2Q10981 343 aa8.71□□□□□ -1.02
NUP54-212ENST00000513248 ZC3H15Q8WU90 426 aaKnown RBP8.71□□□□□ -1.02
NUP54-212ENST00000513248 DDX11L8A8MPP1 907 aa8.7□□□□□ -1.02
NUP54-212ENST00000513248 CD2BP2O95400 341 aaKnown RBP8.7□□□□□ -1.02
NUP54-212ENST00000513248 AAASQ9NRG9 546 aa8.7□□□□□ -1.02
NUP54-212ENST00000513248 ZMYND10O75800 440 aa8.69□□□□□ -1.02
NUP54-212ENST00000513248 PRKCSHP14314 528 aaPredicted RBP8.69□□□□□ -1.02
NUP54-212ENST00000513248 SLC27A5Q9Y2P5 690 aa8.69□□□□□ -1.02
NUP54-212ENST00000513248 FCF1Q9Y324 198 aaKnown RBP8.69□□□□□ -1.02
NUP54-212ENST00000513248 POTECB2RU33 542 aa8.68□□□□□ -1.02
NUP54-212ENST00000513248 AVPP01185 164 aa8.68□□□□□ -1.02
NUP54-212ENST00000513248 TPRNQ4KMQ1 711 aa8.68□□□□□ -1.02
NUP54-212ENST00000513248 FAM160A2Q8N612 972 aaPredicted RBP8.68□□□□□ -1.02
NUP54-212ENST00000513248 TOR4AQ9NXH8 423 aa8.68□□□□□ -1.02
NUP54-212ENST00000513248 FOXC1Q12948 553 aa8.67□□□□□ -1.02
NUP54-212ENST00000513248 MSS51Q4VC12 460 aa8.67□□□□□ -1.02
NUP54-212ENST00000513248 BRICD5Q6PL45 260 aa8.67□□□□□ -1.02
NUP54-212ENST00000513248 GRIPAP1Q4V328 841 aa8.66□□□□□ -1.02
NUP54-212ENST00000513248 ST8SIA5O15466 376 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms