RNA–Protein interactions for RNA: ENST00000512275.5

RFC1-213, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 841 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-213ENST00000512275 C6orf132Q5T0Z8 1188 aa12.3□□□□□ -0.44
RFC1-213ENST00000512275 RBM27Q9P2N5 1060 aaKnown RBP12.3□□□□□ -0.44
RFC1-213ENST00000512275 EIF4G1Q04637 1599 aaKnown RBP12.3□□□□□ -0.44
RFC1-213ENST00000512275 RSF1Q96T23 1441 aaPredicted RBP12.29□□□□□ -0.44
RFC1-213ENST00000512275 METTL3Q86U44 580 aaKnown RBP12.29□□□□□ -0.44
RFC1-213ENST00000512275 WIZO95785 1651 aa12.29□□□□□ -0.44
RFC1-213ENST00000512275 BHMG1C9JSJ3 638 aaPredicted RBP12.28□□□□□ -0.44
RFC1-213ENST00000512275 PADI6Q6TGC4 694 aa12.28□□□□□ -0.44
RFC1-213ENST00000512275 ADGRG1Q9Y653 693 aa12.28□□□□□ -0.44
RFC1-213ENST00000512275 SH3D19Q5HYK7 790 aa12.27□□□□□ -0.45
RFC1-213ENST00000512275 ONECUT3O60422 494 aaPredicted RBP12.26□□□□□ -0.45
RFC1-213ENST00000512275 OATP04181 439 aa12.26□□□□□ -0.45
RFC1-213ENST00000512275 FAM161AQ3B820 660 aa12.26□□□□□ -0.45
RFC1-213ENST00000512275 PXYLP1Q8TE99 480 aa12.26□□□□□ -0.45
RFC1-213ENST00000512275 PLA2G2EQ9NZK7 142 aa12.26□□□□□ -0.45
RFC1-213ENST00000512275 SSTR3P32745 418 aaPredicted RBP12.24□□□□□ -0.45
RFC1-213ENST00000512275 RSPH6AQ9H0K4 717 aa12.24□□□□□ -0.45
RFC1-213ENST00000512275 FAM217BQ9NTX9 383 aaPredicted RBP12.24□□□□□ -0.45
RFC1-213ENST00000512275 PPP1R3GB7ZBB8 358 aa12.23□□□□□ -0.45
RFC1-213ENST00000512275 HOMEZQ8IX15 550 aa12.23□□□□□ -0.45
RFC1-213ENST00000512275 PCMTD1Q96MG8 357 aaPredicted RBP12.23□□□□□ -0.45
RFC1-213ENST00000512275 FLIIQ13045 1269 aa12.22□□□□□ -0.45
RFC1-213ENST00000512275 COL9A1P20849 921 aa12.21□□□□□ -0.45
RFC1-213ENST00000512275 MRPL50Q8N5N7 158 aaKnown RBP12.21□□□□□ -0.45
RFC1-213ENST00000512275 NLRP7Q8WX94 980 aa12.21□□□□□ -0.45
RFC1-213ENST00000512275 PROX2Q3B8N5 592 aa12.2□□□□□ -0.46
RFC1-213ENST00000512275 NBPF3Q9H094 633 aa12.2□□□□□ -0.46
RFC1-213ENST00000512275 GOLGA8CPA6NN73 597 aa12.19□□□□□ -0.46
RFC1-213ENST00000512275 PTPN5P54829 565 aa12.19□□□□□ -0.46
RFC1-213ENST00000512275 PRSS12P56730 875 aa12.19□□□□□ -0.46
RFC1-213ENST00000512275 BEGAINQ9BUH8 593 aa12.19□□□□□ -0.46
RFC1-213ENST00000512275 SKIV2LQ15477 1246 aaKnown RBP12.18□□□□□ -0.46
RFC1-213ENST00000512275 THSD4Q6ZMP0 1018 aa12.18□□□□□ -0.46
RFC1-213ENST00000512275 PEG3Q9GZU2 1588 aa12.18□□□□□ -0.46
RFC1-213ENST00000512275 WNT2BQ93097 391 aa12.17□□□□□ -0.46
RFC1-213ENST00000512275 CDCA7LQ96GN5 454 aa12.17□□□□□ -0.46
RFC1-213ENST00000512275 CC2D2AQ9P2K1 1620 aa12.17□□□□□ -0.46
RFC1-213ENST00000512275 RABGEF1Q9UJ41 708 aa12.16□□□□□ -0.46
RFC1-213ENST00000512275 SMARCA2P51531 1590 aa12.16□□□□□ -0.46
RFC1-213ENST00000512275 FAM198AQ9UFP1 575 aa12.15□□□□□ -0.46
RFC1-213ENST00000512275 ATAD2BQ9ULI0 1458 aa12.14□□□□□ -0.47
RFC1-213ENST00000512275 RBM46Q8TBY0 533 aaKnown RBP12.13□□□□□ -0.47
RFC1-213ENST00000512275 TOP2AP11388 1531 aaKnown RBP12.12□□□□□ -0.47
RFC1-213ENST00000512275 MCM6Q14566 821 aa12.11□□□□□ -0.47
RFC1-213ENST00000512275 MYSM1Q5VVJ2 828 aa12.11□□□□□ -0.47
RFC1-213ENST00000512275 PROCA1Q8NCQ7 364 aaPredicted RBP12.11□□□□□ -0.47
RFC1-213ENST00000512275 EYA1Q99502 592 aa12.11□□□□□ -0.47
RFC1-213ENST00000512275 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.11□□□□□ -0.47
RFC1-213ENST00000512275 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.1□□□□□ -0.47
RFC1-213ENST00000512275 KIAA1468Q9P260 1216 aa12.1□□□□□ -0.47
RFC1-213ENST00000512275 BAZ1BQ9UIG0 1483 aaKnown RBP12.09□□□□□ -0.47
RFC1-213ENST00000512275 A6NJR5 290 aa12.08□□□□□ -0.48
RFC1-213ENST00000512275 C1orf115Q9H7X2 142 aa12.08□□□□□ -0.48
RFC1-213ENST00000512275 TSKSQ9UJT2 592 aa12.08□□□□□ -0.48
RFC1-213ENST00000512275 RCCD1A6NED2 376 aa12.07□□□□□ -0.48
RFC1-213ENST00000512275 TBC1D2Q9BYX2 928 aa12.07□□□□□ -0.48
RFC1-213ENST00000512275 POLR3EQ9NVU0 708 aa12.07□□□□□ -0.48
RFC1-213ENST00000512275 HMGXB3Q12766 1538 aa12.06□□□□□ -0.48
RFC1-213ENST00000512275 TRIM6-TRIM34B2RNG4 842 aa12.06□□□□□ -0.48
RFC1-213ENST00000512275 C3orf80F5H4A9 247 aa12.06□□□□□ -0.48
RFC1-213ENST00000512275 LAPTM4BQ86VI4 370 aa12.06□□□□□ -0.48
RFC1-213ENST00000512275 ANKK1Q8NFD2 765 aa12.06□□□□□ -0.48
RFC1-213ENST00000512275 CLK2P49760 499 aaKnown RBP12.05□□□□□ -0.48
RFC1-213ENST00000512275 DIXDC1Q155Q3 683 aa12.04□□□□□ -0.48
RFC1-213ENST00000512275 SEPT9Q9UHD8 586 aaPredicted RBP12.04□□□□□ -0.48
RFC1-213ENST00000512275 NCAPD3P42695 1498 aa12.03□□□□□ -0.48
RFC1-213ENST00000512275 CD46P15529 392 aa12.03□□□□□ -0.48
RFC1-213ENST00000512275 BCAMP50895 628 aa12.02□□□□□ -0.49
RFC1-213ENST00000512275 CLUAP1Q96AJ1 413 aa12.02□□□□□ -0.49
RFC1-213ENST00000512275 ZFRQ96KR1 1074 aaKnown RBP12.02□□□□□ -0.49
RFC1-213ENST00000512275 NBPF26B4DH59 902 aa12.01□□□□□ -0.49
RFC1-213ENST00000512275 DNAJB2P25686 324 aa12.01□□□□□ -0.49
RFC1-213ENST00000512275 NUDT18Q6ZVK8 323 aa12.01□□□□□ -0.49
RFC1-213ENST00000512275 SOWAHBA6NEL2 793 aa12□□□□□ -0.49
RFC1-213ENST00000512275 UBTFP17480 764 aaKnown RBP12□□□□□ -0.49
RFC1-213ENST00000512275 FBXO31Q5XUX0 539 aaPredicted RBP12□□□□□ -0.49
RFC1-213ENST00000512275 LIMD1Q9UGP4 676 aa12□□□□□ -0.49
RFC1-213ENST00000512275 TRAK2O60296 914 aa11.99□□□□□ -0.49
RFC1-213ENST00000512275 IFFO2Q5TF58 517 aa11.99□□□□□ -0.49
RFC1-213ENST00000512275 SPIRE2Q8WWL2 714 aa11.99□□□□□ -0.49
RFC1-213ENST00000512275 TMEM134Q9H6X4 195 aa11.99□□□□□ -0.49
RFC1-213ENST00000512275 FAM98CQ17RN3 349 aaKnown RBP11.98□□□□□ -0.49
RFC1-213ENST00000512275 TUSC1Q2TAM9 212 aa11.98□□□□□ -0.49
RFC1-213ENST00000512275 SULF1Q8IWU6 871 aa11.98□□□□□ -0.49
RFC1-213ENST00000512275 TATDN2Q93075 761 aa11.98□□□□□ -0.49
RFC1-213ENST00000512275 ARID3CA6NKF2 412 aa11.97□□□□□ -0.49
RFC1-213ENST00000512275 PPP2R2DQ66LE6 453 aa11.97□□□□□ -0.49
RFC1-213ENST00000512275 SPDYE5A6NIY4 337 aa11.96□□□□□ -0.49
RFC1-213ENST00000512275 APBB1O00213 710 aa11.96□□□□□ -0.49
RFC1-213ENST00000512275 SPTLC1O15269 473 aa11.96□□□□□ -0.49
RFC1-213ENST00000512275 RFC5P40937 340 aa11.96□□□□□ -0.49
RFC1-213ENST00000512275 BANK1Q8NDB2 785 aa11.96□□□□□ -0.49
RFC1-213ENST00000512275 PNMA3Q9UL41 463 aa11.96□□□□□ -0.49
RFC1-213ENST00000512275 CCDC88BA6NC98 1476 aa11.95□□□□□ -0.5
RFC1-213ENST00000512275 RIC3Q7Z5B4 369 aa11.95□□□□□ -0.5
RFC1-213ENST00000512275 PACS2Q86VP3 889 aa11.95□□□□□ -0.5
RFC1-213ENST00000512275 RSBN1LQ6PCB5 846 aaPredicted RBP11.94□□□□□ -0.5
RFC1-213ENST00000512275 DDX11L8A8MPP1 907 aa11.93□□□□□ -0.5
RFC1-213ENST00000512275 GJA5P36382 358 aa11.93□□□□□ -0.5
RFC1-213ENST00000512275 FNBP4Q8N3X1 1017 aaPredicted RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms