RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 HDGFP51858 240 aaKnown RBP18.32■□□□□ 0.52
RNF4-216ENST00000511859 NCOA3Q9Y6Q9 1424 aa18.32■□□□□ 0.52
RNF4-216ENST00000511859 COL16A1Q07092 1604 aaPredicted RBP18.31■□□□□ 0.52
RNF4-216ENST00000511859 CHD2O14647 1828 aaKnown RBP18.31■□□□□ 0.52
RNF4-216ENST00000511859 LMTK2Q8IWU2 1503 aa18.3■□□□□ 0.52
RNF4-216ENST00000511859 NOS1P29475 1434 aa18.29■□□□□ 0.52
RNF4-216ENST00000511859 LRP6O75581 1613 aa18.28■□□□□ 0.52
RNF4-216ENST00000511859 KANK4Q5T7N3 995 aaPredicted RBP18.28■□□□□ 0.52
RNF4-216ENST00000511859 CADPS2Q86UW7 1296 aa18.28■□□□□ 0.52
RNF4-216ENST00000511859 ABCC5O15440 1437 aa18.27■□□□□ 0.52
RNF4-216ENST00000511859 TBX22Q9Y458 520 aa18.27■□□□□ 0.51
RNF4-216ENST00000511859 ADGRB3O60242 1522 aa18.27■□□□□ 0.51
RNF4-216ENST00000511859 PLEKHG1Q9ULL1 1385 aa18.26■□□□□ 0.51
RNF4-216ENST00000511859 C14orf37Q86TY3 774 aa18.26■□□□□ 0.51
RNF4-216ENST00000511859 C19orf44Q9H6X5 657 aa18.26■□□□□ 0.51
RNF4-216ENST00000511859 CDK12Q9NYV4 1490 aaPredicted RBP18.25■□□□□ 0.51
RNF4-216ENST00000511859 ATF3P18847 181 aa18.25■□□□□ 0.51
RNF4-216ENST00000511859 PPP1R15AO75807 674 aaPredicted RBP18.24■□□□□ 0.51
RNF4-216ENST00000511859 SHPRHQ149N8 1683 aa18.24■□□□□ 0.51
RNF4-216ENST00000511859 VPS8Q8N3P4 1428 aa18.23■□□□□ 0.51
RNF4-216ENST00000511859 AHDC1Q5TGY3 1603 aaPredicted RBP18.23■□□□□ 0.51
RNF4-216ENST00000511859 CROCC2H7BZ55 1655 aa18.22■□□□□ 0.51
RNF4-216ENST00000511859 ZFYVE9O95405 1425 aa18.22■□□□□ 0.51
RNF4-216ENST00000511859 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.21■□□□□ 0.51
RNF4-216ENST00000511859 ANKRD30AQ9BXX3 1397 aa18.21■□□□□ 0.51
RNF4-216ENST00000511859 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.2■□□□□ 0.5
RNF4-216ENST00000511859 DAPK1P53355 1430 aa18.19■□□□□ 0.5
RNF4-216ENST00000511859 RIMS2Q9UQ26 1411 aa18.19■□□□□ 0.5
RNF4-216ENST00000511859 MYO5BQ9ULV0 1848 aa18.18■□□□□ 0.5
RNF4-216ENST00000511859 NUTM2BA6NNL0 878 aaPredicted RBP18.18■□□□□ 0.5
RNF4-216ENST00000511859 NUTM2EB1AL46 878 aaPredicted RBP18.18■□□□□ 0.5
RNF4-216ENST00000511859 NUTM2AQ8IVF1 878 aaPredicted RBP18.18■□□□□ 0.5
RNF4-216ENST00000511859 RPRD2Q5VT52 1461 aaKnown RBP18.18■□□□□ 0.5
RNF4-216ENST00000511859 PIK3R4Q99570 1358 aa18.18■□□□□ 0.5
RNF4-216ENST00000511859 CHIC2Q9UKJ5 165 aa18.17■□□□□ 0.5
RNF4-216ENST00000511859 PTPN23Q9H3S7 1636 aa18.17■□□□□ 0.5
RNF4-216ENST00000511859 AFF2P51816 1311 aa18.17■□□□□ 0.5
RNF4-216ENST00000511859 BRINP3Q76B58 766 aa18.17■□□□□ 0.5
RNF4-216ENST00000511859 RBM6P78332 1123 aaKnown RBP18.16■□□□□ 0.5
RNF4-216ENST00000511859 QTRT2Q9H974 415 aaKnown RBP18.15■□□□□ 0.5
RNF4-216ENST00000511859 LRRC59Q96AG4 307 aaKnown RBP18.14■□□□□ 0.49
RNF4-216ENST00000511859 DIP2AQ14689 1571 aa18.14■□□□□ 0.49
RNF4-216ENST00000511859 TMEM131LA2VDJ0 1609 aa18.13■□□□□ 0.49
RNF4-216ENST00000511859 FOXD1Q16676 465 aa18.13■□□□□ 0.49
RNF4-216ENST00000511859 ADAMTS13Q76LX8 1427 aa18.12■□□□□ 0.49
RNF4-216ENST00000511859 SETD5Q9C0A6 1442 aa18.12■□□□□ 0.49
RNF4-216ENST00000511859 AMOTL2Q9Y2J4 779 aa18.12■□□□□ 0.49
RNF4-216ENST00000511859 GCC2Q8IWJ2 1684 aa18.12■□□□□ 0.49
RNF4-216ENST00000511859 DCCP43146 1447 aa18.1■□□□□ 0.49
RNF4-216ENST00000511859 CHGAP10645 457 aaKnown RBP18.1■□□□□ 0.49
RNF4-216ENST00000511859 NGLY1Q96IV0 654 aa18.1■□□□□ 0.49
RNF4-216ENST00000511859 NUTM2DQ5VT03 806 aaPredicted RBP18.09■□□□□ 0.49
RNF4-216ENST00000511859 C8orf37Q96NL8 207 aa18.09■□□□□ 0.49
RNF4-216ENST00000511859 APLP2Q06481 763 aa18.08■□□□□ 0.49
RNF4-216ENST00000511859 RGS12O14924 1447 aa18.08■□□□□ 0.48
RNF4-216ENST00000511859 ADGRL2O95490 1459 aa18.06■□□□□ 0.48
RNF4-216ENST00000511859 TRPM2O94759 1503 aa18.06■□□□□ 0.48
RNF4-216ENST00000511859 ASXL1Q8IXJ9 1541 aa18.06■□□□□ 0.48
RNF4-216ENST00000511859 ANKRD50Q9ULJ7 1429 aa18.05■□□□□ 0.48
RNF4-216ENST00000511859 ZRANB1Q9UGI0 708 aa18.04■□□□□ 0.48
RNF4-216ENST00000511859 ATAD2Q6PL18 1390 aa18.04■□□□□ 0.48
RNF4-216ENST00000511859 NHSL1Q5SYE7 1610 aa18.04■□□□□ 0.48
RNF4-216ENST00000511859 MST1RQ04912 1400 aa18.03■□□□□ 0.48
RNF4-216ENST00000511859 PTPRUQ92729 1446 aa18.03■□□□□ 0.48
RNF4-216ENST00000511859 PNPLA6Q8IY17 1366 aa18.01■□□□□ 0.47
RNF4-216ENST00000511859 EP400Q96L91 3159 aa18■□□□□ 0.47
RNF4-216ENST00000511859 LOC105371045A0A1W2PR82 267 aa17.99■□□□□ 0.47
RNF4-216ENST00000511859 CCDC125Q86Z20 511 aa17.99■□□□□ 0.47
RNF4-216ENST00000511859 TRPC5Q9UL62 973 aaPredicted RBP17.99■□□□□ 0.47
RNF4-216ENST00000511859 ADAMTS2O95450 1211 aa17.98■□□□□ 0.47
RNF4-216ENST00000511859 USP21Q9UK80 565 aa17.98■□□□□ 0.47
RNF4-216ENST00000511859 UNC13BO14795 1591 aa17.97■□□□□ 0.47
RNF4-216ENST00000511859 DDX17Q92841 729 aaKnown RBP17.97■□□□□ 0.47
RNF4-216ENST00000511859 XRN1Q8IZH2 1706 aaKnown RBP17.96■□□□□ 0.47
RNF4-216ENST00000511859 E9PCH4 1651 aa17.96■□□□□ 0.47
RNF4-216ENST00000511859 FNBP4Q8N3X1 1017 aaPredicted RBP17.95■□□□□ 0.46
RNF4-216ENST00000511859 FAM50AQ14320 339 aaKnown RBP17.94■□□□□ 0.46
RNF4-216ENST00000511859 ADGRL3Q9HAR2 1447 aa17.93■□□□□ 0.46
RNF4-216ENST00000511859 SETBP1Q9Y6X0 1596 aa17.92■□□□□ 0.46
RNF4-216ENST00000511859 SOS2Q07890 1332 aaPredicted RBP17.92■□□□□ 0.46
RNF4-216ENST00000511859 PTCH1Q13635 1447 aa17.91■□□□□ 0.46
RNF4-216ENST00000511859 METP08581 1390 aa17.91■□□□□ 0.46
RNF4-216ENST00000511859 NRXN3Q9Y4C0 1643 aa17.91■□□□□ 0.46
RNF4-216ENST00000511859 C1orf167Q5SNV9 1468 aa17.89■□□□□ 0.45
RNF4-216ENST00000511859 ZNF326Q5BKZ1 582 aaKnown RBP17.89■□□□□ 0.45
RNF4-216ENST00000511859 LAMC1P11047 1609 aa17.88■□□□□ 0.45
RNF4-216ENST00000511859 ATRNO75882 1429 aa17.88■□□□□ 0.45
RNF4-216ENST00000511859 IQGAP3Q86VI3 1631 aa17.88■□□□□ 0.45
RNF4-216ENST00000511859 ORAI2Q96SN7 254 aa17.86■□□□□ 0.45
RNF4-216ENST00000511859 NUP155O75694 1391 aa17.86■□□□□ 0.45
RNF4-216ENST00000511859 NALCNQ8IZF0 1738 aa17.85■□□□□ 0.45
RNF4-216ENST00000511859 GJD4Q96KN9 370 aaPredicted RBP17.83■□□□□ 0.45
RNF4-216ENST00000511859 ROCK1Q13464 1354 aa17.82■□□□□ 0.44
RNF4-216ENST00000511859 COL22A1Q8NFW1 1626 aaPredicted RBP17.81■□□□□ 0.44
RNF4-216ENST00000511859 BCL9LQ86UU0 1499 aa17.81■□□□□ 0.44
RNF4-216ENST00000511859 NPHP3Q7Z494 1330 aa17.78■□□□□ 0.44
RNF4-216ENST00000511859 BLMP54132 1417 aaPredicted RBP17.78■□□□□ 0.44
RNF4-216ENST00000511859 SPHKAPQ2M3C7 1700 aa17.78■□□□□ 0.44
RNF4-216ENST00000511859 MYOM2P54296 1465 aa17.77■□□□□ 0.44
RNF4-216ENST00000511859 MARF1Q9Y4F3 1742 aaKnown RBP17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms