RNA–Protein interactions for RNA: ENST00000509876.5

PHF3-210, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best)

Gene PHF3, Length 7,124 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-210ENST00000509876 LMOD3Q0VAK6 560 aa6.68□□□□□ -1.34
PHF3-210ENST00000509876 MAPKBP1O60336 1514 aa6.67□□□□□ -1.34
PHF3-210ENST00000509876 TCOF1Q13428 1488 aaKnown RBP6.67□□□□□ -1.34
PHF3-210ENST00000509876 TMX4Q9H1E5 349 aaPredicted RBP6.67□□□□□ -1.34
PHF3-210ENST00000509876 CHMP4BQ9H444 224 aaKnown RBP6.67□□□□□ -1.34
PHF3-210ENST00000509876 LRPPRCP42704 1394 aaKnown RBP6.67□□□□□ -1.34
PHF3-210ENST00000509876 TSPOAP1O95153 1857 aa6.67□□□□□ -1.34
PHF3-210ENST00000509876 ZMYM3Q14202 1370 aa6.67□□□□□ -1.34
PHF3-210ENST00000509876 CABP2Q9NPB3 220 aa6.67□□□□□ -1.34
PHF3-210ENST00000509876 NUTM2BA6NNL0 878 aaPredicted RBP6.67□□□□□ -1.34
PHF3-210ENST00000509876 NUTM2EB1AL46 878 aaPredicted RBP6.67□□□□□ -1.34
PHF3-210ENST00000509876 TOM1O60784 492 aa6.67□□□□□ -1.34
PHF3-210ENST00000509876 NUTM2AQ8IVF1 878 aaPredicted RBP6.67□□□□□ -1.34
PHF3-210ENST00000509876 KDM6BO15054 1643 aa6.67□□□□□ -1.34
PHF3-210ENST00000509876 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.66□□□□□ -1.34
PHF3-210ENST00000509876 PANK3Q9H999 370 aa6.66□□□□□ -1.34
PHF3-210ENST00000509876 MAGI2Q86UL8 1455 aa6.66□□□□□ -1.34
PHF3-210ENST00000509876 MSH6P52701 1360 aa6.66□□□□□ -1.34
PHF3-210ENST00000509876 ABTB2Q8N961 1025 aa6.66□□□□□ -1.34
PHF3-210ENST00000509876 IDI1Q13907 227 aa6.66□□□□□ -1.34
PHF3-210ENST00000509876 FTSJ3Q8IY81 847 aaKnown RBP6.66□□□□□ -1.34
PHF3-210ENST00000509876 ZNF692Q9BU19 519 aaPredicted RBP6.66□□□□□ -1.34
PHF3-210ENST00000509876 SMG6Q86US8 1419 aaKnown RBP6.66□□□□□ -1.34
PHF3-210ENST00000509876 MS4A1P11836 297 aa6.66□□□□□ -1.34
PHF3-210ENST00000509876 CDK19Q9BWU1 502 aa6.66□□□□□ -1.34
PHF3-210ENST00000509876 ERCC6L2Q5T890 1561 aa6.65□□□□□ -1.34
PHF3-210ENST00000509876 NLRP6P59044 892 aa6.65□□□□□ -1.34
PHF3-210ENST00000509876 SF3B2Q13435 895 aaKnown RBP6.65□□□□□ -1.34
PHF3-210ENST00000509876 AMOTL2Q9Y2J4 779 aa6.65□□□□□ -1.34
PHF3-210ENST00000509876 NLRP13Q86W25 1043 aa6.64□□□□□ -1.35
PHF3-210ENST00000509876 RIMS2Q9UQ26 1411 aa6.64□□□□□ -1.35
PHF3-210ENST00000509876 PMFBP1Q8TBY8 1022 aa6.64□□□□□ -1.35
PHF3-210ENST00000509876 ZNF330Q9Y3S2 320 aaPredicted RBP6.64□□□□□ -1.35
PHF3-210ENST00000509876 RAPGEF4Q8WZA2 1011 aa6.64□□□□□ -1.35
PHF3-210ENST00000509876 ATAD2Q6PL18 1390 aa6.64□□□□□ -1.35
PHF3-210ENST00000509876 UBAP1LF5GYI3 381 aa6.64□□□□□ -1.35
PHF3-210ENST00000509876 CADPS2Q86UW7 1296 aa6.63□□□□□ -1.35
PHF3-210ENST00000509876 MAGI3Q5TCQ9 1506 aa6.63□□□□□ -1.35
PHF3-210ENST00000509876 NUTM2GQ5VZR2 741 aa6.63□□□□□ -1.35
PHF3-210ENST00000509876 DNMT1P26358 1616 aaKnown RBP6.63□□□□□ -1.35
PHF3-210ENST00000509876 NLRP2Q9NX02 1062 aa6.63□□□□□ -1.35
PHF3-210ENST00000509876 NCKAP5LQ9HCH0 1330 aa6.63□□□□□ -1.35
PHF3-210ENST00000509876 NOS1P29475 1434 aa6.62□□□□□ -1.35
PHF3-210ENST00000509876 TTC5Q8N0Z6 440 aa6.62□□□□□ -1.35
PHF3-210ENST00000509876 MIER1Q8N108 512 aa6.62□□□□□ -1.35
PHF3-210ENST00000509876 HSPA2P54652 639 aa6.62□□□□□ -1.35
PHF3-210ENST00000509876 MSH5O43196 834 aa6.62□□□□□ -1.35
PHF3-210ENST00000509876 ARHGEF5Q12774 1597 aa6.62□□□□□ -1.35
PHF3-210ENST00000509876 GOLGA2Q08379 1002 aa6.62□□□□□ -1.35
PHF3-210ENST00000509876 DIAPH1O60610 1272 aaKnown RBP6.61□□□□□ -1.35
PHF3-210ENST00000509876 STK31Q9BXU1 1019 aa6.61□□□□□ -1.35
PHF3-210ENST00000509876 HECW2Q9P2P5 1572 aa6.61□□□□□ -1.35
PHF3-210ENST00000509876 HMGB2P26583 209 aaKnown RBP6.61□□□□□ -1.35
PHF3-210ENST00000509876 STRN4Q9NRL3 753 aa6.61□□□□□ -1.35
PHF3-210ENST00000509876 TTC37Q6PGP7 1564 aa6.61□□□□□ -1.35
PHF3-210ENST00000509876 CCER2I3L3R5 266 aa6.61□□□□□ -1.35
PHF3-210ENST00000509876 SYTL4Q96C24 671 aaPredicted RBP6.61□□□□□ -1.35
PHF3-210ENST00000509876 MAST1Q9Y2H9 1570 aa6.61□□□□□ -1.35
PHF3-210ENST00000509876 LMTK3Q96Q04 1460 aa6.61□□□□□ -1.35
PHF3-210ENST00000509876 MYBBP1AQ9BQG0 1328 aaKnown RBP6.61□□□□□ -1.35
PHF3-210ENST00000509876 DCAF8L1A6NGE4 600 aa6.61□□□□□ -1.35
PHF3-210ENST00000509876 OS9Q13438 667 aaPredicted RBP6.6□□□□□ -1.35
PHF3-210ENST00000509876 ADCY10Q96PN6 1610 aa6.6□□□□□ -1.35
PHF3-210ENST00000509876 PREX2Q70Z35 1606 aa6.6□□□□□ -1.35
PHF3-210ENST00000509876 TEFQ10587 303 aa6.6□□□□□ -1.35
PHF3-210ENST00000509876 KCNH5Q8NCM2 988 aa6.6□□□□□ -1.35
PHF3-210ENST00000509876 NUDT16Q96DE0 195 aaKnown RBP6.6□□□□□ -1.35
PHF3-210ENST00000509876 PRDM11Q9NQV5 511 aa6.6□□□□□ -1.35
PHF3-210ENST00000509876 CABP1Q9NZU7 370 aa6.6□□□□□ -1.35
PHF3-210ENST00000509876 UPF2Q9HAU5 1272 aaKnown RBP6.6□□□□□ -1.35
PHF3-210ENST00000509876 ABCC1P33527 1531 aa6.59□□□□□ -1.35
PHF3-210ENST00000509876 ADGBQ8N7X0 1667 aa6.59□□□□□ -1.35
PHF3-210ENST00000509876 PHF8Q9UPP1 1060 aa6.59□□□□□ -1.35
PHF3-210ENST00000509876 YEATS2Q9ULM3 1422 aa6.59□□□□□ -1.35
PHF3-210ENST00000509876 NBPF1Q3BBV0 1214 aa6.59□□□□□ -1.35
PHF3-210ENST00000509876 TOM1L2Q6ZVM7 507 aa6.59□□□□□ -1.35
PHF3-210ENST00000509876 MLH3Q9UHC1 1453 aa6.59□□□□□ -1.35
PHF3-210ENST00000509876 SHROOM2Q13796 1616 aa6.59□□□□□ -1.35
PHF3-210ENST00000509876 IPO8O15397 1037 aaKnown RBP6.59□□□□□ -1.35
PHF3-210ENST00000509876 HDAC5Q9UQL6 1122 aa6.59□□□□□ -1.35
PHF3-210ENST00000509876 ADGRL2O95490 1459 aa6.59□□□□□ -1.35
PHF3-210ENST00000509876 FRAT1Q92837 279 aaPredicted RBP6.59□□□□□ -1.35
PHF3-210ENST00000509876 KDM5DQ9BY66 1539 aa6.59□□□□□ -1.36
PHF3-210ENST00000509876 ARAP3Q8WWN8 1544 aa6.58□□□□□ -1.36
PHF3-210ENST00000509876 SAMD9LQ8IVG5 1584 aa6.58□□□□□ -1.36
PHF3-210ENST00000509876 TATP17735 454 aaPredicted RBP6.58□□□□□ -1.36
PHF3-210ENST00000509876 WAPLQ7Z5K2 1190 aa6.58□□□□□ -1.36
PHF3-210ENST00000509876 GGNBP2Q9H3C7 697 aa6.58□□□□□ -1.36
PHF3-210ENST00000509876 C14orf93Q9H972 538 aaKnown RBP6.58□□□□□ -1.36
PHF3-210ENST00000509876 CCDC61Q9Y6R9 512 aa6.58□□□□□ -1.36
PHF3-210ENST00000509876 ADGRF5Q8IZF2 1346 aa6.58□□□□□ -1.36
PHF3-210ENST00000509876 GTF2E1P29083 439 aaPredicted RBP6.58□□□□□ -1.36
PHF3-210ENST00000509876 XPCQ01831 940 aaPredicted RBP6.58□□□□□ -1.36
PHF3-210ENST00000509876 WASLO00401 505 aaPredicted RBP6.57□□□□□ -1.36
PHF3-210ENST00000509876 PDE3BQ13370 1112 aa6.57□□□□□ -1.36
PHF3-210ENST00000509876 PLEKHO1Q53GL0 409 aaPredicted RBP6.57□□□□□ -1.36
PHF3-210ENST00000509876 USP35Q9P2H5 1018 aa6.57□□□□□ -1.36
PHF3-210ENST00000509876 CCDC136Q96JN2 1154 aa6.57□□□□□ -1.36
PHF3-210ENST00000509876 SENP3-EIF4A1A0A087X0R7 540 aa6.57□□□□□ -1.36
PHF3-210ENST00000509876 EIF5BO60841 1220 aaKnown RBP6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms