RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 STAC3Q96MF2 364 aa10.4□□□□□ -0.74
NUP54-204ENST00000506098 SETD1AO15047 1707 aaKnown RBP10.4□□□□□ -0.74
NUP54-204ENST00000506098 MYOM2P54296 1465 aa10.4□□□□□ -0.74
NUP54-204ENST00000506098 LAMC1P11047 1609 aa10.4□□□□□ -0.75
NUP54-204ENST00000506098 RPGRIP1LQ68CZ1 1315 aa10.39□□□□□ -0.75
NUP54-204ENST00000506098 SLIT1O75093 1534 aa10.39□□□□□ -0.75
NUP54-204ENST00000506098 PPP1R15AO75807 674 aaPredicted RBP10.39□□□□□ -0.75
NUP54-204ENST00000506098 UHRF1BP1Q6BDS2 1440 aa10.39□□□□□ -0.75
NUP54-204ENST00000506098 ARHGAP23Q9P227 1491 aa10.38□□□□□ -0.75
NUP54-204ENST00000506098 NRXN1Q9ULB1 1477 aa10.38□□□□□ -0.75
NUP54-204ENST00000506098 ZFYVE9O95405 1425 aa10.38□□□□□ -0.75
NUP54-204ENST00000506098 IQGAP1P46940 1657 aa10.37□□□□□ -0.75
NUP54-204ENST00000506098 NRXN3Q9Y4C0 1643 aa10.36□□□□□ -0.75
NUP54-204ENST00000506098 RGL3Q3MIN7 710 aa10.36□□□□□ -0.75
NUP54-204ENST00000506098 DCAF11Q8TEB1 546 aa10.36□□□□□ -0.75
NUP54-204ENST00000506098 PRAG1Q86YV5 1406 aa10.35□□□□□ -0.75
NUP54-204ENST00000506098 STRCQ7RTU9 1775 aa10.35□□□□□ -0.75
NUP54-204ENST00000506098 CHGAP10645 457 aaKnown RBP10.35□□□□□ -0.75
NUP54-204ENST00000506098 RIMS2Q9UQ26 1411 aa10.34□□□□□ -0.75
NUP54-204ENST00000506098 ZNF326Q5BKZ1 582 aaKnown RBP10.34□□□□□ -0.75
NUP54-204ENST00000506098 THEMISQ8N1K5 641 aaPredicted RBP10.34□□□□□ -0.75
NUP54-204ENST00000506098 STAG3Q9UJ98 1225 aa10.34□□□□□ -0.75
NUP54-204ENST00000506098 TMEM2Q9UHN6 1383 aa10.34□□□□□ -0.75
NUP54-204ENST00000506098 SETBP1Q9Y6X0 1596 aa10.34□□□□□ -0.75
NUP54-204ENST00000506098 CHD2O14647 1828 aaKnown RBP10.33□□□□□ -0.76
NUP54-204ENST00000506098 PIK3C2GO75747 1445 aa10.33□□□□□ -0.76
NUP54-204ENST00000506098 RALGAPBQ86X10 1494 aa10.32□□□□□ -0.76
NUP54-204ENST00000506098 VGFO15240 615 aaPredicted RBP10.32□□□□□ -0.76
NUP54-204ENST00000506098 HDGFP51858 240 aaKnown RBP10.32□□□□□ -0.76
NUP54-204ENST00000506098 NBPF8Q3BBV2 869 aa10.32□□□□□ -0.76
NUP54-204ENST00000506098 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.32□□□□□ -0.76
NUP54-204ENST00000506098 KDM2AQ9Y2K7 1162 aa10.32□□□□□ -0.76
NUP54-204ENST00000506098 ALKQ9UM73 1620 aa10.32□□□□□ -0.76
NUP54-204ENST00000506098 LMTK3Q96Q04 1460 aa10.31□□□□□ -0.76
NUP54-204ENST00000506098 KNDC1Q76NI1 1749 aa10.31□□□□□ -0.76
NUP54-204ENST00000506098 ADGRF5Q8IZF2 1346 aa10.31□□□□□ -0.76
NUP54-204ENST00000506098 DIP2AQ14689 1571 aa10.31□□□□□ -0.76
NUP54-204ENST00000506098 ARHGEF28Q8N1W1 1705 aaKnown RBP10.3□□□□□ -0.76
NUP54-204ENST00000506098 MED14O60244 1454 aa10.3□□□□□ -0.76
NUP54-204ENST00000506098 SCAF11Q99590 1463 aaKnown RBP10.3□□□□□ -0.76
NUP54-204ENST00000506098 GPRASP1Q5JY77 1395 aa10.28□□□□□ -0.76
NUP54-204ENST00000506098 PLEKHG1Q9ULL1 1385 aa10.28□□□□□ -0.76
NUP54-204ENST00000506098 ADGRB1O14514 1584 aa10.28□□□□□ -0.76
NUP54-204ENST00000506098 LTKP29376 864 aa10.28□□□□□ -0.76
NUP54-204ENST00000506098 ADRA2BP18089 450 aa10.27□□□□□ -0.77
NUP54-204ENST00000506098 C14orf93Q9H972 538 aaKnown RBP10.27□□□□□ -0.77
NUP54-204ENST00000506098 EID1Q9Y6B2 187 aa10.27□□□□□ -0.77
NUP54-204ENST00000506098 ASXL1Q8IXJ9 1541 aa10.27□□□□□ -0.77
NUP54-204ENST00000506098 SLC24A1O60721 1099 aa10.26□□□□□ -0.77
NUP54-204ENST00000506098 TXNDC2Q86VQ3 553 aa10.26□□□□□ -0.77
NUP54-204ENST00000506098 ANKLE2Q86XL3 938 aa10.26□□□□□ -0.77
NUP54-204ENST00000506098 ADAMTS13Q76LX8 1427 aa10.25□□□□□ -0.77
NUP54-204ENST00000506098 NUTM2DQ5VT03 806 aaPredicted RBP10.25□□□□□ -0.77
NUP54-204ENST00000506098 QRICH2Q9H0J4 1663 aa10.25□□□□□ -0.77
NUP54-204ENST00000506098 XRN1Q8IZH2 1706 aaKnown RBP10.24□□□□□ -0.77
NUP54-204ENST00000506098 NBPF1Q3BBV0 1214 aa10.24□□□□□ -0.77
NUP54-204ENST00000506098 CFAP70Q5T0N1 1121 aa10.24□□□□□ -0.77
NUP54-204ENST00000506098 ROCK2O75116 1388 aaKnown RBP10.24□□□□□ -0.77
NUP54-204ENST00000506098 STRCP1A6NGW2 1772 aa10.24□□□□□ -0.77
NUP54-204ENST00000506098 NPHP4O75161 1426 aaPredicted RBP10.23□□□□□ -0.77
NUP54-204ENST00000506098 DLC1Q96QB1 1528 aa10.23□□□□□ -0.77
NUP54-204ENST00000506098 TBX22Q9Y458 520 aa10.22□□□□□ -0.77
NUP54-204ENST00000506098 CPS1P31327 1500 aa10.22□□□□□ -0.77
NUP54-204ENST00000506098 XIRP1Q702N8 1843 aaKnown RBP10.21□□□□□ -0.77
NUP54-204ENST00000506098 PIK3R4Q99570 1358 aa10.21□□□□□ -0.78
NUP54-204ENST00000506098 NWD1Q149M9 1564 aa10.21□□□□□ -0.78
NUP54-204ENST00000506098 TECPR2O15040 1411 aa10.2□□□□□ -0.78
NUP54-204ENST00000506098 CARD11Q9BXL7 1154 aa10.2□□□□□ -0.78
NUP54-204ENST00000506098 YTHDC2Q9H6S0 1430 aaKnown RBP10.2□□□□□ -0.78
NUP54-204ENST00000506098 NCKAP5LQ9HCH0 1330 aa10.2□□□□□ -0.78
NUP54-204ENST00000506098 METP08581 1390 aa10.19□□□□□ -0.78
NUP54-204ENST00000506098 HSPA2P54652 639 aa10.19□□□□□ -0.78
NUP54-204ENST00000506098 EIF4G2P78344 907 aaKnown RBP eCLIP10.19□□□□□ -0.78
NUP54-204ENST00000506098 LRPPRCP42704 1394 aaKnown RBP10.18□□□□□ -0.78
NUP54-204ENST00000506098 ABCC11Q96J66 1382 aa10.18□□□□□ -0.78
NUP54-204ENST00000506098 USP47Q96K76 1375 aa10.18□□□□□ -0.78
NUP54-204ENST00000506098 TMEM132EQ6IEE7 984 aa10.18□□□□□ -0.78
NUP54-204ENST00000506098 RGPD8O14715 1765 aaPredicted RBP10.18□□□□□ -0.78
NUP54-204ENST00000506098 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.18□□□□□ -0.78
NUP54-204ENST00000506098 PTPRUQ92729 1446 aa10.17□□□□□ -0.78
NUP54-204ENST00000506098 SIRT1Q96EB6 747 aa10.17□□□□□ -0.78
NUP54-204ENST00000506098 SLC26A8Q96RN1 970 aa10.17□□□□□ -0.78
NUP54-204ENST00000506098 FAM135BQ49AJ0 1406 aa10.16□□□□□ -0.78
NUP54-204ENST00000506098 EIF3AQ14152 1382 aaKnown RBP10.16□□□□□ -0.78
NUP54-204ENST00000506098 HSPA5P11021 654 aaKnown RBP10.16□□□□□ -0.78
NUP54-204ENST00000506098 BCANQ96GW7 911 aa10.16□□□□□ -0.78
NUP54-204ENST00000506098 NALCNQ8IZF0 1738 aa10.16□□□□□ -0.78
NUP54-204ENST00000506098 SBNO2Q9Y2G9 1366 aa10.15□□□□□ -0.78
NUP54-204ENST00000506098 PTCH1Q13635 1447 aa10.15□□□□□ -0.79
NUP54-204ENST00000506098 ADGRB2O60241 1585 aa10.14□□□□□ -0.79
NUP54-204ENST00000506098 ERICH6Q7L0X2 663 aa10.14□□□□□ -0.79
NUP54-204ENST00000506098 TRAK1Q9UPV9 953 aa10.14□□□□□ -0.79
NUP54-204ENST00000506098 ITSN1Q15811 1721 aa10.13□□□□□ -0.79
NUP54-204ENST00000506098 MYOM1P52179 1685 aa10.13□□□□□ -0.79
NUP54-204ENST00000506098 NKTRP30414 1462 aaKnown RBP10.13□□□□□ -0.79
NUP54-204ENST00000506098 ST20-MTHFSA0A0A6YYL1 179 aa10.13□□□□□ -0.79
NUP54-204ENST00000506098 DMRT2Q9Y5R5 561 aa10.13□□□□□ -0.79
NUP54-204ENST00000506098 FMN2Q9NZ56 1722 aa10.13□□□□□ -0.79
NUP54-204ENST00000506098 CENPJQ9HC77 1338 aaPredicted RBP10.12□□□□□ -0.79
NUP54-204ENST00000506098 ZNF316A6NFI3 1004 aaPredicted RBP10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms