RNA–Protein interactions for RNA: ENST00000498708.1

SPTA1-209, Transcript of spectrin alpha, erythrocytic 1, humanhuman

TSL 3

Gene SPTA1, Length 600 nt, Biotype retained intron, Subcellular localisation Cytosol, Dendrite .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1-209ENST00000498708 MYT1LQ9UL68 1186 aa9.46□□□□□ -0.9
SPTA1-209ENST00000498708 SAMD9Q5K651 1589 aa9.46□□□□□ -0.9
SPTA1-209ENST00000498708 SETD1AO15047 1707 aaKnown RBP9.45□□□□□ -0.9
SPTA1-209ENST00000498708 PLA2R1Q13018 1463 aa9.45□□□□□ -0.9
SPTA1-209ENST00000498708 ECM2O94769 699 aaPredicted RBP9.44□□□□□ -0.9
SPTA1-209ENST00000498708 AGLP35573 1532 aa9.44□□□□□ -0.9
SPTA1-209ENST00000498708 REREQ9P2R6 1566 aa9.44□□□□□ -0.9
SPTA1-209ENST00000498708 ABCA6Q8N139 1617 aa9.44□□□□□ -0.9
SPTA1-209ENST00000498708 KDM5CP41229 1560 aa9.43□□□□□ -0.9
SPTA1-209ENST00000498708 CPS1P31327 1500 aa9.43□□□□□ -0.9
SPTA1-209ENST00000498708 SHANK2Q9UPX8 1470 aa9.43□□□□□ -0.9
SPTA1-209ENST00000498708 NPATQ14207 1427 aa9.43□□□□□ -0.9
SPTA1-209ENST00000498708 ZMYM3Q14202 1370 aa9.43□□□□□ -0.9
SPTA1-209ENST00000498708 EFCAB2Q5VUJ9 269 aa9.43□□□□□ -0.9
SPTA1-209ENST00000498708 ZNF142P52746 1687 aaPredicted RBP9.42□□□□□ -0.9
SPTA1-209ENST00000498708 ZNF518AQ6AHZ1 1483 aa9.42□□□□□ -0.9
SPTA1-209ENST00000498708 PRXQ9BXM0 1461 aa9.42□□□□□ -0.9
SPTA1-209ENST00000498708 MYO3AQ8NEV4 1616 aa9.42□□□□□ -0.9
SPTA1-209ENST00000498708 CEP170BQ9Y4F5 1589 aaPredicted RBP9.41□□□□□ -0.9
SPTA1-209ENST00000498708 PTPRKQ15262 1439 aa9.41□□□□□ -0.9
SPTA1-209ENST00000498708 CNTLNQ9NXG0 1405 aa9.41□□□□□ -0.9
SPTA1-209ENST00000498708 BCL11BQ9C0K0 894 aaPredicted RBP9.41□□□□□ -0.9
SPTA1-209ENST00000498708 MYO5CQ9NQX4 1742 aa9.4□□□□□ -0.9
SPTA1-209ENST00000498708 MROH2AA6NES4 1674 aa9.4□□□□□ -0.9
SPTA1-209ENST00000498708 RANGAP1P46060 587 aaPredicted RBP9.4□□□□□ -0.9
SPTA1-209ENST00000498708 CDAN1Q8IWY9 1227 aa9.4□□□□□ -0.9
SPTA1-209ENST00000498708 CDK13Q14004 1512 aaKnown RBP9.39□□□□□ -0.91
SPTA1-209ENST00000498708 MLH3Q9UHC1 1453 aa9.39□□□□□ -0.91
SPTA1-209ENST00000498708 VWDEQ8N2E2 1590 aa9.38□□□□□ -0.91
SPTA1-209ENST00000498708 NEURL4Q96JN8 1562 aa9.38□□□□□ -0.91
SPTA1-209ENST00000498708 NLRP6P59044 892 aa9.38□□□□□ -0.91
SPTA1-209ENST00000498708 STK24Q9Y6E0 443 aa9.38□□□□□ -0.91
SPTA1-209ENST00000498708 CLTCQ00610 1675 aaKnown RBP9.37□□□□□ -0.91
SPTA1-209ENST00000498708 STK25O00506 426 aa9.37□□□□□ -0.91
SPTA1-209ENST00000498708 MICALL2Q8IY33 904 aa9.37□□□□□ -0.91
SPTA1-209ENST00000498708 UPF1Q92900 1129 aaKnown RBP eCLIP9.37□□□□□ -0.91
SPTA1-209ENST00000498708 PHF8Q9UPP1 1060 aa9.37□□□□□ -0.91
SPTA1-209ENST00000498708 POLR1AO95602 1720 aaPredicted RBP9.36□□□□□ -0.91
SPTA1-209ENST00000498708 DNMT1P26358 1616 aaKnown RBP9.36□□□□□ -0.91
SPTA1-209ENST00000498708 STRCP1A6NGW2 1772 aa9.36□□□□□ -0.91
SPTA1-209ENST00000498708 KIDINS220Q9ULH0 1771 aa9.36□□□□□ -0.91
SPTA1-209ENST00000498708 MARVELD3Q96A59 401 aa9.35□□□□□ -0.91
SPTA1-209ENST00000498708 MS4A4AQ96JQ5 239 aa9.35□□□□□ -0.91
SPTA1-209ENST00000498708 ARHGAP5Q13017 1502 aa9.35□□□□□ -0.91
SPTA1-209ENST00000498708 KIF14Q15058 1648 aa9.34□□□□□ -0.91
SPTA1-209ENST00000498708 LRRC7Q96NW7 1537 aa9.33□□□□□ -0.92
SPTA1-209ENST00000498708 EMP3P54852 163 aa9.33□□□□□ -0.92
SPTA1-209ENST00000498708 DOK7Q18PE1 504 aa9.33□□□□□ -0.92
SPTA1-209ENST00000498708 A2ML1A8K2U0 1454 aa9.33□□□□□ -0.92
SPTA1-209ENST00000498708 CDC42BPBQ9Y5S2 1711 aa9.32□□□□□ -0.92
SPTA1-209ENST00000498708 RGL2O15211 777 aa9.32□□□□□ -0.92
SPTA1-209ENST00000498708 ZNF710Q8N1W2 664 aa9.32□□□□□ -0.92
SPTA1-209ENST00000498708 RIMBP2O15034 1052 aa9.31□□□□□ -0.92
SPTA1-209ENST00000498708 FBXO22Q8NEZ5 403 aa9.31□□□□□ -0.92
SPTA1-209ENST00000498708 RNF17Q9BXT8 1623 aaKnown RBP9.31□□□□□ -0.92
SPTA1-209ENST00000498708 HOXB3P14651 431 aaPredicted RBP9.3□□□□□ -0.92
SPTA1-209ENST00000498708 ITSN2Q9NZM3 1697 aa9.29□□□□□ -0.92
SPTA1-209ENST00000498708 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.29□□□□□ -0.92
SPTA1-209ENST00000498708 GGT6Q6P531 493 aa9.29□□□□□ -0.92
SPTA1-209ENST00000498708 ANKLE2Q86XL3 938 aa9.29□□□□□ -0.92
SPTA1-209ENST00000498708 ABCC1P33527 1531 aa9.28□□□□□ -0.92
SPTA1-209ENST00000498708 FBXO31Q5XUX0 539 aaPredicted RBP9.28□□□□□ -0.92
SPTA1-209ENST00000498708 TRIM52Q96A61 297 aa9.28□□□□□ -0.92
SPTA1-209ENST00000498708 MFRPQ9BY79 579 aa9.28□□□□□ -0.92
SPTA1-209ENST00000498708 ATP1B4Q9UN42 357 aaPredicted RBP9.28□□□□□ -0.92
SPTA1-209ENST00000498708 NPHP4O75161 1426 aaPredicted RBP9.28□□□□□ -0.92
SPTA1-209ENST00000498708 XIRP1Q702N8 1843 aaKnown RBP9.27□□□□□ -0.93
SPTA1-209ENST00000498708 MED14O60244 1454 aa9.27□□□□□ -0.93
SPTA1-209ENST00000498708 SAMD9LQ8IVG5 1584 aa9.25□□□□□ -0.93
SPTA1-209ENST00000498708 HOXB1P14653 301 aaPredicted RBP9.25□□□□□ -0.93
SPTA1-209ENST00000498708 TMEM92Q6UXU6 159 aa9.25□□□□□ -0.93
SPTA1-209ENST00000498708 ZSWIM6Q9HCJ5 1215 aa9.25□□□□□ -0.93
SPTA1-209ENST00000498708 IQGAP1P46940 1657 aa9.25□□□□□ -0.93
SPTA1-209ENST00000498708 SYNMO15061 1565 aa9.24□□□□□ -0.93
SPTA1-209ENST00000498708 DEPDC5O75140 1603 aa9.24□□□□□ -0.93
SPTA1-209ENST00000498708 TROQ12816 1431 aaPredicted RBP9.24□□□□□ -0.93
SPTA1-209ENST00000498708 FAM135BQ49AJ0 1406 aa9.24□□□□□ -0.93
SPTA1-209ENST00000498708 FAM205CA6NFA0 338 aa9.24□□□□□ -0.93
SPTA1-209ENST00000498708 PLXNC1O60486 1568 aa9.24□□□□□ -0.93
SPTA1-209ENST00000498708 TNRQ92752 1358 aa9.24□□□□□ -0.93
SPTA1-209ENST00000498708 PREX2Q70Z35 1606 aa9.23□□□□□ -0.93
SPTA1-209ENST00000498708 THEMISQ8N1K5 641 aaPredicted RBP9.23□□□□□ -0.93
SPTA1-209ENST00000498708 HS3ST6Q96QI5 342 aa9.23□□□□□ -0.93
SPTA1-209ENST00000498708 CDK11AQ9UQ88 783 aaPredicted RBP9.23□□□□□ -0.93
SPTA1-209ENST00000498708 SPAG9O60271 1321 aaKnown RBP9.23□□□□□ -0.93
SPTA1-209ENST00000498708 A2MP01023 1474 aa9.21□□□□□ -0.93
SPTA1-209ENST00000498708 ROBO1Q9Y6N7 1651 aa9.21□□□□□ -0.93
SPTA1-209ENST00000498708 HNRNPMP52272 730 aaKnown RBP eCLIP9.21□□□□□ -0.94
SPTA1-209ENST00000498708 LRRIQ1Q96JM4 1722 aa9.21□□□□□ -0.94
SPTA1-209ENST00000498708 ZNF777Q9ULD5 760 aaPredicted RBP9.2□□□□□ -0.94
SPTA1-209ENST00000498708 UGGT1Q9NYU2 1555 aa9.2□□□□□ -0.94
SPTA1-209ENST00000498708 ZC3H13Q5T200 1668 aaKnown RBP9.2□□□□□ -0.94
SPTA1-209ENST00000498708 CDC42BPAQ5VT25 1732 aa9.19□□□□□ -0.94
SPTA1-209ENST00000498708 ERBB3P21860 1342 aa9.19□□□□□ -0.94
SPTA1-209ENST00000498708 CLIP1P30622 1438 aa9.19□□□□□ -0.94
SPTA1-209ENST00000498708 ATP7AQ04656 1500 aa9.19□□□□□ -0.94
SPTA1-209ENST00000498708 LRP6O75581 1613 aa9.18□□□□□ -0.94
SPTA1-209ENST00000498708 HS6ST3Q8IZP7 471 aa9.18□□□□□ -0.94
SPTA1-209ENST00000498708 SYCP2Q9BX26 1530 aa9.18□□□□□ -0.94
SPTA1-209ENST00000498708 FAM135AQ9P2D6 1515 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms