RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 GCC2Q8IWJ2 1684 aa22.97■■□□□ 1.27
TRAF4-212ENST00000498540 SLC52A1Q9NWF4 448 aa22.96■■□□□ 1.27
TRAF4-212ENST00000498540 ZFYVE9O95405 1425 aa22.96■■□□□ 1.27
TRAF4-212ENST00000498540 RPRD2Q5VT52 1461 aaKnown RBP22.96■■□□□ 1.27
TRAF4-212ENST00000498540 CHD2O14647 1828 aaKnown RBP22.94■■□□□ 1.26
TRAF4-212ENST00000498540 ANKRD50Q9ULJ7 1429 aa22.93■■□□□ 1.26
TRAF4-212ENST00000498540 POTEAQ6S8J7 498 aa22.93■■□□□ 1.26
TRAF4-212ENST00000498540 BCANQ96GW7 911 aa22.93■■□□□ 1.26
TRAF4-212ENST00000498540 PHLPP1O60346 1717 aa22.93■■□□□ 1.26
TRAF4-212ENST00000498540 TMEM131LA2VDJ0 1609 aa22.93■■□□□ 1.26
TRAF4-212ENST00000498540 MSH6P52701 1360 aa22.92■■□□□ 1.26
TRAF4-212ENST00000498540 PLEKHG1Q9ULL1 1385 aa22.91■■□□□ 1.26
TRAF4-212ENST00000498540 RIMS2Q9UQ26 1411 aa22.91■■□□□ 1.26
TRAF4-212ENST00000498540 FAM50AQ14320 339 aaKnown RBP22.9■■□□□ 1.26
TRAF4-212ENST00000498540 UNC13BO14795 1591 aa22.89■■□□□ 1.25
TRAF4-212ENST00000498540 SLAIN2Q9P270 581 aa22.87■■□□□ 1.25
TRAF4-212ENST00000498540 PPP1R15AO75807 674 aaPredicted RBP22.86■■□□□ 1.25
TRAF4-212ENST00000498540 E9PCH4 1651 aa22.86■■□□□ 1.25
TRAF4-212ENST00000498540 SETD1AO15047 1707 aaKnown RBP22.85■■□□□ 1.25
TRAF4-212ENST00000498540 COL16A1Q07092 1604 aaPredicted RBP22.85■■□□□ 1.25
TRAF4-212ENST00000498540 JCADQ9P266 1359 aa22.82■■□□□ 1.24
TRAF4-212ENST00000498540 ADAMTS13Q76LX8 1427 aa22.81■■□□□ 1.24
TRAF4-212ENST00000498540 TBX22Q9Y458 520 aa22.8■■□□□ 1.24
TRAF4-212ENST00000498540 DIP2AQ14689 1571 aa22.8■■□□□ 1.24
TRAF4-212ENST00000498540 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.79■■□□□ 1.24
TRAF4-212ENST00000498540 IQGAP3Q86VI3 1631 aa22.79■■□□□ 1.24
TRAF4-212ENST00000498540 CHGAP10645 457 aaKnown RBP22.79■■□□□ 1.24
TRAF4-212ENST00000498540 HDGFP51858 240 aaKnown RBP22.79■■□□□ 1.24
TRAF4-212ENST00000498540 NUTM2DQ5VT03 806 aaPredicted RBP22.79■■□□□ 1.24
TRAF4-212ENST00000498540 NCOA3Q9Y6Q9 1424 aa22.78■■□□□ 1.24
TRAF4-212ENST00000498540 LRP6O75581 1613 aa22.77■■□□□ 1.24
TRAF4-212ENST00000498540 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.76■■□□□ 1.23
TRAF4-212ENST00000498540 C14orf37Q86TY3 774 aa22.75■■□□□ 1.23
TRAF4-212ENST00000498540 AHDC1Q5TGY3 1603 aaPredicted RBP22.75■■□□□ 1.23
TRAF4-212ENST00000498540 PIK3R4Q99570 1358 aa22.73■■□□□ 1.23
TRAF4-212ENST00000498540 TRPM2O94759 1503 aa22.72■■□□□ 1.23
TRAF4-212ENST00000498540 SHPRHQ149N8 1683 aa22.72■■□□□ 1.23
TRAF4-212ENST00000498540 ROCK1Q13464 1354 aa22.72■■□□□ 1.23
TRAF4-212ENST00000498540 PTPRUQ92729 1446 aa22.71■■□□□ 1.23
TRAF4-212ENST00000498540 CADPS2Q86UW7 1296 aa22.7■■□□□ 1.22
TRAF4-212ENST00000498540 NRXN3Q9Y4C0 1643 aa22.69■■□□□ 1.22
TRAF4-212ENST00000498540 SPATA31A6Q5VVP1 1343 aa22.69■■□□□ 1.22
TRAF4-212ENST00000498540 C19orf44Q9H6X5 657 aa22.69■■□□□ 1.22
TRAF4-212ENST00000498540 ATF3P18847 181 aa22.68■■□□□ 1.22
TRAF4-212ENST00000498540 XRN1Q8IZH2 1706 aaKnown RBP22.67■■□□□ 1.22
TRAF4-212ENST00000498540 NUP155O75694 1391 aa22.66■■□□□ 1.22
TRAF4-212ENST00000498540 AMOTL2Q9Y2J4 779 aa22.66■■□□□ 1.22
TRAF4-212ENST00000498540 MEX3CQ5U5Q3 659 aaKnown RBP22.65■■□□□ 1.22
TRAF4-212ENST00000498540 SPHKAPQ2M3C7 1700 aa22.65■■□□□ 1.22
TRAF4-212ENST00000498540 SETBP1Q9Y6X0 1596 aa22.63■■□□□ 1.21
TRAF4-212ENST00000498540 BRINP3Q76B58 766 aa22.63■■□□□ 1.21
TRAF4-212ENST00000498540 DCCP43146 1447 aa22.62■■□□□ 1.21
TRAF4-212ENST00000498540 ASXL1Q8IXJ9 1541 aa22.62■■□□□ 1.21
TRAF4-212ENST00000498540 ZNF772Q68DY9 489 aaPredicted RBP22.61■■□□□ 1.21
TRAF4-212ENST00000498540 ITGAEP38570 1179 aa22.6■■□□□ 1.21
TRAF4-212ENST00000498540 NHSL1Q5SYE7 1610 aa22.6■■□□□ 1.21
TRAF4-212ENST00000498540 TRIM52Q96A61 297 aa22.59■■□□□ 1.21
TRAF4-212ENST00000498540 MST1RQ04912 1400 aa22.58■■□□□ 1.21
TRAF4-212ENST00000498540 METP08581 1390 aa22.56■■□□□ 1.2
TRAF4-212ENST00000498540 NUTM2BA6NNL0 878 aaPredicted RBP22.56■■□□□ 1.2
TRAF4-212ENST00000498540 NUTM2EB1AL46 878 aaPredicted RBP22.56■■□□□ 1.2
TRAF4-212ENST00000498540 NUTM2AQ8IVF1 878 aaPredicted RBP22.56■■□□□ 1.2
TRAF4-212ENST00000498540 NALCNQ8IZF0 1738 aa22.55■■□□□ 1.2
TRAF4-212ENST00000498540 UPF1Q92900 1129 aaKnown RBP eCLIP22.55■■□□□ 1.2
TRAF4-212ENST00000498540 CLTCL1P53675 1640 aa22.55■■□□□ 1.2
TRAF4-212ENST00000498540 SETD5Q9C0A6 1442 aa22.55■■□□□ 1.2
TRAF4-212ENST00000498540 NEXMIFQ5QGS0 1516 aa22.53■■□□□ 1.2
TRAF4-212ENST00000498540 ZNF326Q5BKZ1 582 aaKnown RBP22.53■■□□□ 1.2
TRAF4-212ENST00000498540 ADGRL3Q9HAR2 1447 aa22.52■■□□□ 1.2
TRAF4-212ENST00000498540 RXRBP28702 533 aa22.51■■□□□ 1.19
TRAF4-212ENST00000498540 CDK12Q9NYV4 1490 aaPredicted RBP22.5■■□□□ 1.19
TRAF4-212ENST00000498540 AFF2P51816 1311 aa22.5■■□□□ 1.19
TRAF4-212ENST00000498540 DDX17Q92841 729 aaKnown RBP22.49■■□□□ 1.19
TRAF4-212ENST00000498540 PPARGC1BQ86YN6 1023 aaKnown RBP22.48■■□□□ 1.19
TRAF4-212ENST00000498540 KIF1BO60333 1816 aa22.47■■□□□ 1.19
TRAF4-212ENST00000498540 LRRC59Q96AG4 307 aaKnown RBP22.46■■□□□ 1.19
TRAF4-212ENST00000498540 PNPLA6Q8IY17 1366 aa22.46■■□□□ 1.19
TRAF4-212ENST00000498540 C8orf37Q96NL8 207 aa22.43■■□□□ 1.18
TRAF4-212ENST00000498540 C1orf167Q5SNV9 1468 aa22.42■■□□□ 1.18
TRAF4-212ENST00000498540 RGS12O14924 1447 aa22.42■■□□□ 1.18
TRAF4-212ENST00000498540 LAMC1P11047 1609 aa22.42■■□□□ 1.18
TRAF4-212ENST00000498540 PTCH1Q13635 1447 aa22.4■■□□□ 1.18
TRAF4-212ENST00000498540 NAIPQ13075 1403 aa22.38■■□□□ 1.17
TRAF4-212ENST00000498540 ROBO2Q9HCK4 1378 aa22.38■■□□□ 1.17
TRAF4-212ENST00000498540 QTRT2Q9H974 415 aaKnown RBP22.37■■□□□ 1.17
TRAF4-212ENST00000498540 RBM6P78332 1123 aaKnown RBP22.35■■□□□ 1.17
TRAF4-212ENST00000498540 PRAG1Q86YV5 1406 aa22.34■■□□□ 1.17
TRAF4-212ENST00000498540 RRBP1Q9P2E9 1410 aaKnown RBP22.34■■□□□ 1.17
TRAF4-212ENST00000498540 ADAMTS2O95450 1211 aa22.34■■□□□ 1.17
TRAF4-212ENST00000498540 PPLO60437 1756 aa22.34■■□□□ 1.17
TRAF4-212ENST00000498540 ORAI2Q96SN7 254 aa22.33■■□□□ 1.17
TRAF4-212ENST00000498540 SOS2Q07890 1332 aaPredicted RBP22.32■■□□□ 1.16
TRAF4-212ENST00000498540 NGLY1Q96IV0 654 aa22.32■■□□□ 1.16
TRAF4-212ENST00000498540 VGFO15240 615 aaPredicted RBP22.31■■□□□ 1.16
TRAF4-212ENST00000498540 COL22A1Q8NFW1 1626 aaPredicted RBP22.3■■□□□ 1.16
TRAF4-212ENST00000498540 HFM1A2PYH4 1435 aa22.28■■□□□ 1.16
TRAF4-212ENST00000498540 CDC42BPGQ6DT37 1551 aa22.26■■□□□ 1.15
TRAF4-212ENST00000498540 USP21Q9UK80 565 aa22.26■■□□□ 1.15
TRAF4-212ENST00000498540 RPGRIP1LQ68CZ1 1315 aa22.26■■□□□ 1.15
TRAF4-212ENST00000498540 MYOM2P54296 1465 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms