RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 TRPM1Q7Z4N2 1603 aa11.72□□□□□ -0.53
SF3A1-210ENST00000498259 SYNMO15061 1565 aa11.72□□□□□ -0.53
SF3A1-210ENST00000498259 UGGT1Q9NYU2 1555 aa11.72□□□□□ -0.53
SF3A1-210ENST00000498259 DDX10Q13206 875 aaKnown RBP11.72□□□□□ -0.53
SF3A1-210ENST00000498259 POTEDQ86YR6 584 aa11.72□□□□□ -0.53
SF3A1-210ENST00000498259 HIRIP3Q9BW71 556 aaPredicted RBP11.72□□□□□ -0.53
SF3A1-210ENST00000498259 KIAA1210Q9ULL0 1709 aa11.72□□□□□ -0.53
SF3A1-210ENST00000498259 TMF1P82094 1093 aa11.71□□□□□ -0.53
SF3A1-210ENST00000498259 MADDQ8WXG6 1647 aa11.71□□□□□ -0.54
SF3A1-210ENST00000498259 NLRP1Q9C000 1473 aa11.7□□□□□ -0.54
SF3A1-210ENST00000498259 NRXN1Q9ULB1 1477 aa11.7□□□□□ -0.54
SF3A1-210ENST00000498259 ST20-MTHFSA0A0A6YYL1 179 aa11.7□□□□□ -0.54
SF3A1-210ENST00000498259 ANP32CO43423 234 aa11.7□□□□□ -0.54
SF3A1-210ENST00000498259 NBPF1Q3BBV0 1214 aa11.7□□□□□ -0.54
SF3A1-210ENST00000498259 C14orf93Q9H972 538 aaKnown RBP11.7□□□□□ -0.54
SF3A1-210ENST00000498259 CFAP65Q6ZU64 1925 aaKnown RBP11.7□□□□□ -0.54
SF3A1-210ENST00000498259 SCAF11Q99590 1463 aaKnown RBP11.7□□□□□ -0.54
SF3A1-210ENST00000498259 ADGRF5Q8IZF2 1346 aa11.69□□□□□ -0.54
SF3A1-210ENST00000498259 SIGLEC1Q9BZZ2 1709 aa11.69□□□□□ -0.54
SF3A1-210ENST00000498259 PIK3C2GO75747 1445 aa11.69□□□□□ -0.54
SF3A1-210ENST00000498259 CCDC7Q96M83 1385 aa11.68□□□□□ -0.54
SF3A1-210ENST00000498259 TMEM131LA2VDJ0 1609 aa11.68□□□□□ -0.54
SF3A1-210ENST00000498259 SETBP1Q9Y6X0 1596 aa11.67□□□□□ -0.54
SF3A1-210ENST00000498259 WASHC2AQ641Q2 1341 aa11.67□□□□□ -0.54
SF3A1-210ENST00000498259 CFAP70Q5T0N1 1121 aa11.67□□□□□ -0.54
SF3A1-210ENST00000498259 THEMISQ8N1K5 641 aaPredicted RBP11.67□□□□□ -0.54
SF3A1-210ENST00000498259 EID1Q9Y6B2 187 aa11.67□□□□□ -0.54
SF3A1-210ENST00000498259 KDM5AP29375 1690 aaKnown RBP11.67□□□□□ -0.54
SF3A1-210ENST00000498259 IFT172Q9UG01 1749 aa11.66□□□□□ -0.54
SF3A1-210ENST00000498259 KIF7Q2M1P5 1343 aa11.66□□□□□ -0.54
SF3A1-210ENST00000498259 PPLO60437 1756 aa11.66□□□□□ -0.54
SF3A1-210ENST00000498259 NEXMIFQ5QGS0 1516 aa11.65□□□□□ -0.54
SF3A1-210ENST00000498259 A2ML1A8K2U0 1454 aa11.65□□□□□ -0.54
SF3A1-210ENST00000498259 FER1L4A9Z1Z3 1794 aa11.64□□□□□ -0.55
SF3A1-210ENST00000498259 RIMS2Q9UQ26 1411 aa11.64□□□□□ -0.55
SF3A1-210ENST00000498259 MIER1Q8N108 512 aa11.63□□□□□ -0.55
SF3A1-210ENST00000498259 POLR3GLQ9BT43 218 aa11.63□□□□□ -0.55
SF3A1-210ENST00000498259 BCANQ96GW7 911 aa11.62□□□□□ -0.55
SF3A1-210ENST00000498259 POLR1AO95602 1720 aaPredicted RBP11.62□□□□□ -0.55
SF3A1-210ENST00000498259 TMEM2Q9UHN6 1383 aa11.62□□□□□ -0.55
SF3A1-210ENST00000498259 SBNO2Q9Y2G9 1366 aa11.62□□□□□ -0.55
SF3A1-210ENST00000498259 CENPJQ9HC77 1338 aaPredicted RBP11.61□□□□□ -0.55
SF3A1-210ENST00000498259 PUS7Q96PZ0 661 aaKnown RBP11.61□□□□□ -0.55
SF3A1-210ENST00000498259 CCER2I3L3R5 266 aa11.6□□□□□ -0.55
SF3A1-210ENST00000498259 CEBPAP49715 358 aaPredicted RBP11.6□□□□□ -0.55
SF3A1-210ENST00000498259 TESK2Q96S53 571 aa11.6□□□□□ -0.55
SF3A1-210ENST00000498259 C3P01024 1663 aa11.59□□□□□ -0.55
SF3A1-210ENST00000498259 KTN1Q86UP2 1357 aaKnown RBP11.59□□□□□ -0.55
SF3A1-210ENST00000498259 C11orf95C9JLR9 678 aaPredicted RBP11.59□□□□□ -0.55
SF3A1-210ENST00000498259 NUTM2DQ5VT03 806 aaPredicted RBP11.59□□□□□ -0.55
SF3A1-210ENST00000498259 TRAK1Q9UPV9 953 aa11.59□□□□□ -0.55
SF3A1-210ENST00000498259 IQGAP1P46940 1657 aa11.59□□□□□ -0.55
SF3A1-210ENST00000498259 TXNDC2Q86VQ3 553 aa11.58□□□□□ -0.56
SF3A1-210ENST00000498259 POGKQ9P215 609 aa11.58□□□□□ -0.56
SF3A1-210ENST00000498259 EVC2Q86UK5 1308 aa11.58□□□□□ -0.56
SF3A1-210ENST00000498259 SIRT1Q96EB6 747 aa11.57□□□□□ -0.56
SF3A1-210ENST00000498259 PLEKHG1Q9ULL1 1385 aa11.56□□□□□ -0.56
SF3A1-210ENST00000498259 ADAMTSL3P82987 1691 aa11.56□□□□□ -0.56
SF3A1-210ENST00000498259 ADGRB1O14514 1584 aa11.56□□□□□ -0.56
SF3A1-210ENST00000498259 TMEM132EQ6IEE7 984 aa11.56□□□□□ -0.56
SF3A1-210ENST00000498259 UBR1Q8IWV7 1749 aa11.55□□□□□ -0.56
SF3A1-210ENST00000498259 YTHDC2Q9H6S0 1430 aaKnown RBP11.55□□□□□ -0.56
SF3A1-210ENST00000498259 CENPBP07199 599 aaPredicted RBP11.55□□□□□ -0.56
SF3A1-210ENST00000498259 ANKLE2Q86XL3 938 aa11.55□□□□□ -0.56
SF3A1-210ENST00000498259 ALKQ9UM73 1620 aa11.55□□□□□ -0.56
SF3A1-210ENST00000498259 SLIT1O75093 1534 aa11.55□□□□□ -0.56
SF3A1-210ENST00000498259 MYO5BQ9ULV0 1848 aa11.54□□□□□ -0.56
SF3A1-210ENST00000498259 RIMS1Q86UR5 1692 aaKnown RBP11.54□□□□□ -0.56
SF3A1-210ENST00000498259 SETD1BQ9UPS6 1966 aaKnown RBP11.54□□□□□ -0.56
SF3A1-210ENST00000498259 LRPPRCP42704 1394 aaKnown RBP11.54□□□□□ -0.56
SF3A1-210ENST00000498259 ABCC11Q96J66 1382 aa11.54□□□□□ -0.56
SF3A1-210ENST00000498259 MYO3AQ8NEV4 1616 aa11.53□□□□□ -0.56
SF3A1-210ENST00000498259 RALBP1Q15311 655 aa11.53□□□□□ -0.56
SF3A1-210ENST00000498259 STK26Q9P289 416 aa11.53□□□□□ -0.56
SF3A1-210ENST00000498259 TBX22Q9Y458 520 aa11.53□□□□□ -0.56
SF3A1-210ENST00000498259 DISP3Q9P2K9 1392 aa11.53□□□□□ -0.56
SF3A1-210ENST00000498259 NINLQ9Y2I6 1382 aa11.53□□□□□ -0.56
SF3A1-210ENST00000498259 ARHGAP23Q9P227 1491 aa11.52□□□□□ -0.56
SF3A1-210ENST00000498259 KNSTRNQ9Y448 316 aa11.52□□□□□ -0.57
SF3A1-210ENST00000498259 DLC1Q96QB1 1528 aa11.51□□□□□ -0.57
SF3A1-210ENST00000498259 CEP170BQ9Y4F5 1589 aaPredicted RBP11.51□□□□□ -0.57
SF3A1-210ENST00000498259 PRAM1Q96QH2 718 aa11.51□□□□□ -0.57
SF3A1-210ENST00000498259 PRKRIP1Q9H875 184 aaPredicted RBP11.51□□□□□ -0.57
SF3A1-210ENST00000498259 PANK3Q9H999 370 aa11.5□□□□□ -0.57
SF3A1-210ENST00000498259 ATAD2Q6PL18 1390 aa11.5□□□□□ -0.57
SF3A1-210ENST00000498259 PIK3R4Q99570 1358 aa11.5□□□□□ -0.57
SF3A1-210ENST00000498259 FAM135BQ49AJ0 1406 aa11.5□□□□□ -0.57
SF3A1-210ENST00000498259 PTPRMP28827 1452 aa11.5□□□□□ -0.57
SF3A1-210ENST00000498259 DIP2AQ14689 1571 aa11.5□□□□□ -0.57
SF3A1-210ENST00000498259 LTKP29376 864 aa11.49□□□□□ -0.57
SF3A1-210ENST00000498259 SRPK2P78362 688 aaKnown RBP11.48□□□□□ -0.57
SF3A1-210ENST00000498259 TECPR2O15040 1411 aa11.48□□□□□ -0.57
SF3A1-210ENST00000498259 TMC1Q8TDI8 760 aa11.47□□□□□ -0.57
SF3A1-210ENST00000498259 TERF2IPQ9NYB0 399 aa11.47□□□□□ -0.57
SF3A1-210ENST00000498259 QRICH2Q9H0J4 1663 aa11.46□□□□□ -0.57
SF3A1-210ENST00000498259 METP08581 1390 aa11.46□□□□□ -0.57
SF3A1-210ENST00000498259 NPC1L1Q9UHC9 1359 aa11.46□□□□□ -0.57
SF3A1-210ENST00000498259 ZNF142P52746 1687 aaPredicted RBP11.46□□□□□ -0.58
SF3A1-210ENST00000498259 PER1O15534 1290 aaPredicted RBP11.45□□□□□ -0.58
SF3A1-210ENST00000498259 ARHGEF28Q8N1W1 1705 aaKnown RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms