RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 UPF1Q92900 1129 aaKnown RBP eCLIP26.11■■□□□ 1.77
VIM-208ENST00000497849 DAPK1P53355 1430 aa26.08■■□□□ 1.77
VIM-208ENST00000497849 PTPN23Q9H3S7 1636 aa26.08■■□□□ 1.77
VIM-208ENST00000497849 BCANQ96GW7 911 aa26.07■■□□□ 1.76
VIM-208ENST00000497849 MYO5BQ9ULV0 1848 aa26.06■■□□□ 1.76
VIM-208ENST00000497849 ZFYVE9O95405 1425 aa26.05■■□□□ 1.76
VIM-208ENST00000497849 FGD6Q6ZV73 1430 aa26.05■■□□□ 1.76
VIM-208ENST00000497849 SLC52A1Q9NWF4 448 aa26.05■■□□□ 1.76
VIM-208ENST00000497849 SPATA31A6Q5VVP1 1343 aa26.05■■□□□ 1.76
VIM-208ENST00000497849 PLEKHG1Q9ULL1 1385 aa26.04■■□□□ 1.76
VIM-208ENST00000497849 ZNF772Q68DY9 489 aaPredicted RBP26.03■■□□□ 1.76
VIM-208ENST00000497849 TRIM52Q96A61 297 aa26.03■■□□□ 1.76
VIM-208ENST00000497849 SHPRHQ149N8 1683 aa26.02■■□□□ 1.76
VIM-208ENST00000497849 AHDC1Q5TGY3 1603 aaPredicted RBP26.01■■□□□ 1.75
VIM-208ENST00000497849 NCOA3Q9Y6Q9 1424 aa26■■□□□ 1.75
VIM-208ENST00000497849 MEX3CQ5U5Q3 659 aaKnown RBP26■■□□□ 1.75
VIM-208ENST00000497849 ANKRD30AQ9BXX3 1397 aa25.99■■□□□ 1.75
VIM-208ENST00000497849 CHIC2Q9UKJ5 165 aa25.99■■□□□ 1.75
VIM-208ENST00000497849 GCC2Q8IWJ2 1684 aa25.99■■□□□ 1.75
VIM-208ENST00000497849 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.98■■□□□ 1.75
VIM-208ENST00000497849 RIMS2Q9UQ26 1411 aa25.97■■□□□ 1.75
VIM-208ENST00000497849 TMEM131LA2VDJ0 1609 aa25.96■■□□□ 1.75
VIM-208ENST00000497849 TBX22Q9Y458 520 aa25.96■■□□□ 1.75
VIM-208ENST00000497849 RPRD2Q5VT52 1461 aaKnown RBP25.95■■□□□ 1.74
VIM-208ENST00000497849 PPP1R15AO75807 674 aaPredicted RBP25.93■■□□□ 1.74
VIM-208ENST00000497849 RXRBP28702 533 aa25.93■■□□□ 1.74
VIM-208ENST00000497849 DIP2AQ14689 1571 aa25.93■■□□□ 1.74
VIM-208ENST00000497849 ADAMTS13Q76LX8 1427 aa25.92■■□□□ 1.74
VIM-208ENST00000497849 C14orf37Q86TY3 774 aa25.92■■□□□ 1.74
VIM-208ENST00000497849 CADPS2Q86UW7 1296 aa25.92■■□□□ 1.74
VIM-208ENST00000497849 C19orf44Q9H6X5 657 aa25.91■■□□□ 1.74
VIM-208ENST00000497849 CDK12Q9NYV4 1490 aaPredicted RBP25.91■■□□□ 1.74
VIM-208ENST00000497849 HDGFP51858 240 aaKnown RBP25.9■■□□□ 1.74
VIM-208ENST00000497849 LOC105371045A0A1W2PR82 267 aa25.88■■□□□ 1.73
VIM-208ENST00000497849 ATF3P18847 181 aa25.88■■□□□ 1.73
VIM-208ENST00000497849 ADGRL2O95490 1459 aa25.87■■□□□ 1.73
VIM-208ENST00000497849 BRINP3Q76B58 766 aa25.86■■□□□ 1.73
VIM-208ENST00000497849 PIK3R4Q99570 1358 aa25.85■■□□□ 1.73
VIM-208ENST00000497849 NUTM2BA6NNL0 878 aaPredicted RBP25.85■■□□□ 1.73
VIM-208ENST00000497849 NUTM2EB1AL46 878 aaPredicted RBP25.85■■□□□ 1.73
VIM-208ENST00000497849 NUTM2DQ5VT03 806 aaPredicted RBP25.85■■□□□ 1.73
VIM-208ENST00000497849 NUTM2AQ8IVF1 878 aaPredicted RBP25.85■■□□□ 1.73
VIM-208ENST00000497849 SRCAPQ6ZRS2 3230 aa25.85■■□□□ 1.73
VIM-208ENST00000497849 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.84■■□□□ 1.73
VIM-208ENST00000497849 AFF2P51816 1311 aa25.83■■□□□ 1.73
VIM-208ENST00000497849 ANKRD50Q9ULJ7 1429 aa25.82■■□□□ 1.72
VIM-208ENST00000497849 PTPRUQ92729 1446 aa25.81■■□□□ 1.72
VIM-208ENST00000497849 CHGAP10645 457 aaKnown RBP25.8■■□□□ 1.72
VIM-208ENST00000497849 SETD5Q9C0A6 1442 aa25.8■■□□□ 1.72
VIM-208ENST00000497849 ASXL1Q8IXJ9 1541 aa25.79■■□□□ 1.72
VIM-208ENST00000497849 AMOTL2Q9Y2J4 779 aa25.79■■□□□ 1.72
VIM-208ENST00000497849 TRPM2O94759 1503 aa25.78■■□□□ 1.72
VIM-208ENST00000497849 NHSL1Q5SYE7 1610 aa25.78■■□□□ 1.72
VIM-208ENST00000497849 RGS12O14924 1447 aa25.78■■□□□ 1.72
VIM-208ENST00000497849 E9PCH4 1651 aa25.77■■□□□ 1.72
VIM-208ENST00000497849 DCCP43146 1447 aa25.76■■□□□ 1.71
VIM-208ENST00000497849 UNC13BO14795 1591 aa25.75■■□□□ 1.71
VIM-208ENST00000497849 MST1RQ04912 1400 aa25.74■■□□□ 1.71
VIM-208ENST00000497849 APLP2Q06481 763 aa25.74■■□□□ 1.71
VIM-208ENST00000497849 XRN1Q8IZH2 1706 aaKnown RBP25.73■■□□□ 1.71
VIM-208ENST00000497849 RBM6P78332 1123 aaKnown RBP25.71■■□□□ 1.71
VIM-208ENST00000497849 QTRT2Q9H974 415 aaKnown RBP25.71■■□□□ 1.71
VIM-208ENST00000497849 NRXN3Q9Y4C0 1643 aa25.7■■□□□ 1.71
VIM-208ENST00000497849 LRRC59Q96AG4 307 aaKnown RBP25.7■■□□□ 1.7
VIM-208ENST00000497849 C8orf37Q96NL8 207 aa25.7■■□□□ 1.7
VIM-208ENST00000497849 PNPLA6Q8IY17 1366 aa25.69■■□□□ 1.7
VIM-208ENST00000497849 DDX17Q92841 729 aaKnown RBP25.67■■□□□ 1.7
VIM-208ENST00000497849 FAM50AQ14320 339 aaKnown RBP25.66■■□□□ 1.7
VIM-208ENST00000497849 IQGAP3Q86VI3 1631 aa25.64■■□□□ 1.7
VIM-208ENST00000497849 SETBP1Q9Y6X0 1596 aa25.64■■□□□ 1.69
VIM-208ENST00000497849 METP08581 1390 aa25.6■■□□□ 1.69
VIM-208ENST00000497849 ADGRL3Q9HAR2 1447 aa25.6■■□□□ 1.69
VIM-208ENST00000497849 NALCNQ8IZF0 1738 aa25.6■■□□□ 1.69
VIM-208ENST00000497849 ADAMTS2O95450 1211 aa25.58■■□□□ 1.69
VIM-208ENST00000497849 NGLY1Q96IV0 654 aa25.58■■□□□ 1.69
VIM-208ENST00000497849 ATAD2Q6PL18 1390 aa25.57■■□□□ 1.68
VIM-208ENST00000497849 LAMC1P11047 1609 aa25.55■■□□□ 1.68
VIM-208ENST00000497849 EP400Q96L91 3159 aa25.53■■□□□ 1.68
VIM-208ENST00000497849 C1orf167Q5SNV9 1468 aa25.53■■□□□ 1.68
VIM-208ENST00000497849 NUP155O75694 1391 aa25.52■■□□□ 1.68
VIM-208ENST00000497849 USP21Q9UK80 565 aa25.51■■□□□ 1.67
VIM-208ENST00000497849 SPHKAPQ2M3C7 1700 aa25.49■■□□□ 1.67
VIM-208ENST00000497849 ROCK1Q13464 1354 aa25.49■■□□□ 1.67
VIM-208ENST00000497849 SOS2Q07890 1332 aaPredicted RBP25.49■■□□□ 1.67
VIM-208ENST00000497849 TRPC5Q9UL62 973 aaPredicted RBP25.49■■□□□ 1.67
VIM-208ENST00000497849 FNBP4Q8N3X1 1017 aaPredicted RBP25.48■■□□□ 1.67
VIM-208ENST00000497849 ZRANB1Q9UGI0 708 aa25.48■■□□□ 1.67
VIM-208ENST00000497849 ZNF326Q5BKZ1 582 aaKnown RBP25.47■■□□□ 1.67
VIM-208ENST00000497849 ATRNO75882 1429 aa25.46■■□□□ 1.67
VIM-208ENST00000497849 PTCH1Q13635 1447 aa25.46■■□□□ 1.67
VIM-208ENST00000497849 ORAI2Q96SN7 254 aa25.46■■□□□ 1.67
VIM-208ENST00000497849 NEXMIFQ5QGS0 1516 aa25.45■■□□□ 1.66
VIM-208ENST00000497849 COL22A1Q8NFW1 1626 aaPredicted RBP25.44■■□□□ 1.66
VIM-208ENST00000497849 FOXD1Q16676 465 aa25.42■■□□□ 1.66
VIM-208ENST00000497849 CLTCL1P53675 1640 aa25.38■■□□□ 1.65
VIM-208ENST00000497849 CCDC125Q86Z20 511 aa25.38■■□□□ 1.65
VIM-208ENST00000497849 ROBO2Q9HCK4 1378 aa25.38■■□□□ 1.65
VIM-208ENST00000497849 BCL9LQ86UU0 1499 aa25.38■■□□□ 1.65
VIM-208ENST00000497849 MYOM2P54296 1465 aa25.37■■□□□ 1.65
VIM-208ENST00000497849 MARF1Q9Y4F3 1742 aaKnown RBP25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 145.6 ms