RNA–Protein interactions for RNA: ENST00000497511.5

SKAP2-209, Transcript of src kinase associated phosphoprotein 2, human

TSL 4

Gene SKAP2, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SKAP2-209	ENST00000497511	TOM1	O60784	492 aa		17.48	■□□□□ 0.39
SKAP2-209	ENST00000497511	PDAP1	Q13442	181 aa	Known RBP	17.48	■□□□□ 0.39
SKAP2-209	ENST00000497511	ZNF142	P52746	1687 aa	Predicted RBP	17.48	■□□□□ 0.39
SKAP2-209	ENST00000497511	PLXNC1	O60486	1568 aa		17.47	■□□□□ 0.39
SKAP2-209	ENST00000497511	INO80	Q9ULG1	1556 aa	Predicted RBP	17.47	■□□□□ 0.39
SKAP2-209	ENST00000497511	TMEM106C	Q9BVX2	250 aa		17.46	■□□□□ 0.39
SKAP2-209	ENST00000497511	A2ML1	A8K2U0	1454 aa		17.45	■□□□□ 0.38
SKAP2-209	ENST00000497511	TTLL13P	A6NNM8	815 aa		17.45	■□□□□ 0.38
SKAP2-209	ENST00000497511	HSPA1L	P34931	641 aa		17.45	■□□□□ 0.38
SKAP2-209	ENST00000497511	AMER1	Q5JTC6	1135 aa	Predicted RBP	17.44	■□□□□ 0.38
SKAP2-209	ENST00000497511	PSEN1	P49768	467 aa		17.43	■□□□□ 0.38
SKAP2-209	ENST00000497511	ZNF644	Q9H582	1327 aa	Predicted RBP	17.43	■□□□□ 0.38
SKAP2-209	ENST00000497511	TNR	Q92752	1358 aa		17.42	■□□□□ 0.38
SKAP2-209	ENST00000497511	KIF3B	O15066	747 aa		17.42	■□□□□ 0.38
SKAP2-209	ENST00000497511	VGF	O15240	615 aa	Predicted RBP	17.41	■□□□□ 0.38
SKAP2-209	ENST00000497511	ATN1	P54259	1190 aa	Predicted RBP	17.41	■□□□□ 0.38
SKAP2-209	ENST00000497511	FBXO31	Q5XUX0	539 aa	Predicted RBP	17.41	■□□□□ 0.38
SKAP2-209	ENST00000497511	RNF25	Q96BH1	459 aa	Predicted RBP	17.41	■□□□□ 0.38
SKAP2-209	ENST00000497511	ANKLE2	Q86XL3	938 aa		17.4	■□□□□ 0.38
SKAP2-209	ENST00000497511	WASHC2C	Q9Y4E1	1318 aa		17.4	■□□□□ 0.38
SKAP2-209	ENST00000497511	ADGB	Q8N7X0	1667 aa		17.39	■□□□□ 0.37
SKAP2-209	ENST00000497511	CPS1	P31327	1500 aa		17.39	■□□□□ 0.37
SKAP2-209	ENST00000497511	DNMT1	P26358	1616 aa	Known RBP	17.39	■□□□□ 0.37
SKAP2-209	ENST00000497511	DHX29	Q7Z478	1369 aa	Known RBP	17.39	■□□□□ 0.37
SKAP2-209	ENST00000497511	SHANK2	Q9UPX8	1470 aa		17.38	■□□□□ 0.37
SKAP2-209	ENST00000497511	THEMIS	Q8N1K5	641 aa	Predicted RBP	17.38	■□□□□ 0.37
SKAP2-209	ENST00000497511	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	17.37	■□□□□ 0.37
SKAP2-209	ENST00000497511	RTEL1-TNFRSF6B	F6WH68	1400 aa		17.37	■□□□□ 0.37
SKAP2-209	ENST00000497511	MED1	Q15648	1581 aa	Predicted RBP	17.36	■□□□□ 0.37
SKAP2-209	ENST00000497511	RGL2	O15211	777 aa		17.35	■□□□□ 0.37
SKAP2-209	ENST00000497511	SLC39A7	Q92504	469 aa		17.35	■□□□□ 0.37
SKAP2-209	ENST00000497511	TRIM35	Q9UPQ4	493 aa		17.35	■□□□□ 0.37
SKAP2-209	ENST00000497511	MBD5	Q9P267	1494 aa		17.34	■□□□□ 0.37
SKAP2-209	ENST00000497511	TIAM1	Q13009	1591 aa		17.33	■□□□□ 0.37
SKAP2-209	ENST00000497511	KDM5D	Q9BY66	1539 aa		17.33	■□□□□ 0.37
SKAP2-209	ENST00000497511	PZP	P20742	1482 aa		17.33	■□□□□ 0.37
SKAP2-209	ENST00000497511	C7	P10643	843 aa		17.33	■□□□□ 0.36
SKAP2-209	ENST00000497511	PELP1	Q8IZL8	1130 aa	Known RBP	17.33	■□□□□ 0.36
SKAP2-209	ENST00000497511	EHBP1L1	Q8N3D4	1523 aa		17.32	■□□□□ 0.36
SKAP2-209	ENST00000497511	FAM135A	Q9P2D6	1515 aa		17.32	■□□□□ 0.36
SKAP2-209	ENST00000497511	POLR1A	O95602	1720 aa	Predicted RBP	17.32	■□□□□ 0.36
SKAP2-209	ENST00000497511	CCDC141	Q6ZP82	1450 aa		17.31	■□□□□ 0.36
SKAP2-209	ENST00000497511	NPHP4	O75161	1426 aa	Predicted RBP	17.31	■□□□□ 0.36
SKAP2-209	ENST00000497511	MIA2	Q96PC5	1412 aa		17.31	■□□□□ 0.36
SKAP2-209	ENST00000497511	RSPH4A	Q5TD94	716 aa		17.31	■□□□□ 0.36
SKAP2-209	ENST00000497511	NEURL4	Q96JN8	1562 aa		17.31	■□□□□ 0.36
SKAP2-209	ENST00000497511	GOLGA2	Q08379	1002 aa		17.3	■□□□□ 0.36
SKAP2-209	ENST00000497511	IER5L	Q5T953	404 aa		17.3	■□□□□ 0.36
SKAP2-209	ENST00000497511	NLRP1	Q9C000	1473 aa		17.3	■□□□□ 0.36
SKAP2-209	ENST00000497511	CEP162	Q5TB80	1403 aa		17.3	■□□□□ 0.36
SKAP2-209	ENST00000497511	UGGT1	Q9NYU2	1555 aa		17.29	■□□□□ 0.36
SKAP2-209	ENST00000497511	TSPY4	P0CV99	314 aa		17.29	■□□□□ 0.36
SKAP2-209	ENST00000497511	TSPY10	P0CW01	314 aa		17.29	■□□□□ 0.36
SKAP2-209	ENST00000497511	CAMSAP2	Q08AD1	1489 aa		17.26	■□□□□ 0.35
SKAP2-209	ENST00000497511	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	17.26	■□□□□ 0.35
SKAP2-209	ENST00000497511	ZFP91	Q96JP5	570 aa	Predicted RBP	17.26	■□□□□ 0.35
SKAP2-209	ENST00000497511	VWDE	Q8N2E2	1590 aa		17.26	■□□□□ 0.35
SKAP2-209	ENST00000497511	METRN	Q9UJH8	293 aa		17.25	■□□□□ 0.35
SKAP2-209	ENST00000497511	MED14	O60244	1454 aa		17.24	■□□□□ 0.35
SKAP2-209	ENST00000497511	MKRN3	Q13064	507 aa	Known RBP	17.23	■□□□□ 0.35
SKAP2-209	ENST00000497511	RTN4	Q9NQC3	1192 aa	Known RBP	17.23	■□□□□ 0.35
SKAP2-209	ENST00000497511	NCOA2	Q15596	1464 aa		17.23	■□□□□ 0.35
SKAP2-209	ENST00000497511	DEPDC5	O75140	1603 aa		17.21	■□□□□ 0.35
SKAP2-209	ENST00000497511	CABP2	Q9NPB3	220 aa		17.2	■□□□□ 0.34
SKAP2-209	ENST00000497511	IQGAP1	P46940	1657 aa		17.2	■□□□□ 0.34
SKAP2-209	ENST00000497511	LRRC7	Q96NW7	1537 aa		17.19	■□□□□ 0.34
SKAP2-209	ENST00000497511	SEC24B	O95487	1268 aa		17.18	■□□□□ 0.34
SKAP2-209	ENST00000497511	STK25	O00506	426 aa		17.17	■□□□□ 0.34
SKAP2-209	ENST00000497511	BCL11B	Q9C0K0	894 aa	Predicted RBP	17.16	■□□□□ 0.34
SKAP2-209	ENST00000497511	RNF17	Q9BXT8	1623 aa	Known RBP	17.16	■□□□□ 0.34
SKAP2-209	ENST00000497511	ALK	Q9UM73	1620 aa		17.16	■□□□□ 0.34
SKAP2-209	ENST00000497511	ABCC3	O15438	1527 aa		17.16	■□□□□ 0.34
SKAP2-209	ENST00000497511	TXNDC2	Q86VQ3	553 aa		17.15	■□□□□ 0.34
SKAP2-209	ENST00000497511	EID1	Q9Y6B2	187 aa		17.15	■□□□□ 0.34
SKAP2-209	ENST00000497511	ERVK-7	P63135	1459 aa		17.15	■□□□□ 0.34
SKAP2-209	ENST00000497511	SYNM	O15061	1565 aa		17.15	■□□□□ 0.34
SKAP2-209	ENST00000497511	ARHGEF5	Q12774	1597 aa		17.15	■□□□□ 0.34
SKAP2-209	ENST00000497511	STK24	Q9Y6E0	443 aa		17.14	■□□□□ 0.33
SKAP2-209	ENST00000497511	SCAF11	Q99590	1463 aa	Known RBP	17.13	■□□□□ 0.33
SKAP2-209	ENST00000497511	ZC3H13	Q5T200	1668 aa	Known RBP	17.11	■□□□□ 0.33
SKAP2-209	ENST00000497511	PLCG2	P16885	1265 aa		17.11	■□□□□ 0.33
SKAP2-209	ENST00000497511	LTK	P29376	864 aa		17.1	■□□□□ 0.33
SKAP2-209	ENST00000497511	IRX5	P78411	483 aa	Predicted RBP	17.1	■□□□□ 0.33
SKAP2-209	ENST00000497511	OCEL1	Q9H607	264 aa		17.1	■□□□□ 0.33
SKAP2-209	ENST00000497511	STRCP1	A6NGW2	1772 aa		17.09	■□□□□ 0.33
SKAP2-209	ENST00000497511	SOX12	O15370	315 aa		17.07	■□□□□ 0.32
SKAP2-209	ENST00000497511	LHX8	Q68G74	356 aa		17.07	■□□□□ 0.32
SKAP2-209	ENST00000497511	HS6ST3	Q8IZP7	471 aa		17.07	■□□□□ 0.32
SKAP2-209	ENST00000497511	EFCAB3	Q8N7B9	438 aa		17.07	■□□□□ 0.32
SKAP2-209	ENST00000497511	RGS17	Q9UGC6	210 aa	Predicted RBP	17.07	■□□□□ 0.32
SKAP2-209	ENST00000497511	EIF2AK4	Q9P2K8	1649 aa	Known RBP	17.07	■□□□□ 0.32
SKAP2-209	ENST00000497511	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	17.06	■□□□□ 0.32
SKAP2-209	ENST00000497511	MAST1	Q9Y2H9	1570 aa		17.06	■□□□□ 0.32
SKAP2-209	ENST00000497511	COLQ	Q9Y215	455 aa	Predicted RBP	17.05	■□□□□ 0.32
SKAP2-209	ENST00000497511	LRRC9	Q6ZRR7	1453 aa		17.05	■□□□□ 0.32
SKAP2-209	ENST00000497511	UBR1	Q8IWV7	1749 aa		17.04	■□□□□ 0.32
SKAP2-209	ENST00000497511	CHGA	P10645	457 aa	Known RBP	17.04	■□□□□ 0.32
SKAP2-209	ENST00000497511	BCAN	Q96GW7	911 aa		17.04	■□□□□ 0.32
SKAP2-209	ENST00000497511	DUOX2	Q9NRD8	1548 aa		17.04	■□□□□ 0.32
SKAP2-209	ENST00000497511	SLIT1	O75093	1534 aa		17.03	■□□□□ 0.32

Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms