RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 SENP3Q9H4L4 574 aaPredicted RBP27.8■■■□□ 2.04
USP39-218ENST00000493829 RIMS2Q9UQ26 1411 aa27.79■■■□□ 2.04
USP39-218ENST00000493829 PPP1R15AO75807 674 aaPredicted RBP27.79■■■□□ 2.04
USP39-218ENST00000493829 MYOM2P54296 1465 aa27.78■■■□□ 2.04
USP39-218ENST00000493829 RPGRIP1LQ68CZ1 1315 aa27.76■■■□□ 2.03
USP39-218ENST00000493829 TMEM2Q9UHN6 1383 aa27.76■■■□□ 2.03
USP39-218ENST00000493829 ZFYVE9O95405 1425 aa27.75■■■□□ 2.03
USP39-218ENST00000493829 PRAG1Q86YV5 1406 aa27.75■■■□□ 2.03
USP39-218ENST00000493829 ADGRF5Q8IZF2 1346 aa27.75■■■□□ 2.03
USP39-218ENST00000493829 NBPF8Q3BBV2 869 aa27.75■■■□□ 2.03
USP39-218ENST00000493829 THEMISQ8N1K5 641 aaPredicted RBP27.73■■■□□ 2.03
USP39-218ENST00000493829 SLIT1O75093 1534 aa27.72■■■□□ 2.03
USP39-218ENST00000493829 ARHGAP23Q9P227 1491 aa27.7■■■□□ 2.03
USP39-218ENST00000493829 NRXN1Q9ULB1 1477 aa27.69■■■□□ 2.02
USP39-218ENST00000493829 TRPM1Q7Z4N2 1603 aa27.68■■■□□ 2.02
USP39-218ENST00000493829 LMTK3Q96Q04 1460 aa27.68■■■□□ 2.02
USP39-218ENST00000493829 VGFO15240 615 aaPredicted RBP27.68■■■□□ 2.02
USP39-218ENST00000493829 PIK3C2GO75747 1445 aa27.67■■■□□ 2.02
USP39-218ENST00000493829 LTKP29376 864 aa27.65■■■□□ 2.02
USP39-218ENST00000493829 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.65■■■□□ 2.02
USP39-218ENST00000493829 TXNDC2Q86VQ3 553 aa27.65■■■□□ 2.02
USP39-218ENST00000493829 SCAF11Q99590 1463 aaKnown RBP27.64■■■□□ 2.02
USP39-218ENST00000493829 HSPA2P54652 639 aa27.64■■■□□ 2.02
USP39-218ENST00000493829 EID1Q9Y6B2 187 aa27.64■■■□□ 2.02
USP39-218ENST00000493829 IQGAP1P46940 1657 aa27.64■■■□□ 2.01
USP39-218ENST00000493829 STAC3Q96MF2 364 aa27.63■■■□□ 2.01
USP39-218ENST00000493829 RALGAPBQ86X10 1494 aa27.63■■■□□ 2.01
USP39-218ENST00000493829 POLR1AO95602 1720 aaPredicted RBP27.61■■■□□ 2.01
USP39-218ENST00000493829 HDGFP51858 240 aaKnown RBP27.61■■■□□ 2.01
USP39-218ENST00000493829 BCANQ96GW7 911 aa27.6■■■□□ 2.01
USP39-218ENST00000493829 NRXN3Q9Y4C0 1643 aa27.6■■■□□ 2.01
USP39-218ENST00000493829 CFAP70Q5T0N1 1121 aa27.59■■■□□ 2.01
USP39-218ENST00000493829 ROCK2O75116 1388 aaKnown RBP27.58■■■□□ 2.01
USP39-218ENST00000493829 LAMC1P11047 1609 aa27.58■■■□□ 2.01
USP39-218ENST00000493829 KIAA1210Q9ULL0 1709 aa27.58■■■□□ 2.01
USP39-218ENST00000493829 NBPF1Q3BBV0 1214 aa27.56■■■□□ 2
USP39-218ENST00000493829 ANKLE2Q86XL3 938 aa27.56■■■□□ 2
USP39-218ENST00000493829 PLEKHG1Q9ULL1 1385 aa27.56■■■□□ 2
USP39-218ENST00000493829 SETBP1Q9Y6X0 1596 aa27.56■■■□□ 2
USP39-218ENST00000493829 ALKQ9UM73 1620 aa27.55■■■□□ 2
USP39-218ENST00000493829 NCKAP5LQ9HCH0 1330 aa27.54■■■□□ 2
USP39-218ENST00000493829 SETD1AO15047 1707 aaKnown RBP27.53■■■□□ 2
USP39-218ENST00000493829 ASXL1Q8IXJ9 1541 aa27.51■■□□□ 1.99
USP39-218ENST00000493829 C14orf93Q9H972 538 aaKnown RBP27.51■■□□□ 1.99
USP39-218ENST00000493829 CARD11Q9BXL7 1154 aa27.5■■□□□ 1.99
USP39-218ENST00000493829 ADAMTS13Q76LX8 1427 aa27.49■■□□□ 1.99
USP39-218ENST00000493829 TMEM132EQ6IEE7 984 aa27.49■■□□□ 1.99
USP39-218ENST00000493829 ADGRB1O14514 1584 aa27.48■■□□□ 1.99
USP39-218ENST00000493829 NPHP4O75161 1426 aaPredicted RBP27.48■■□□□ 1.99
USP39-218ENST00000493829 SLC26A8Q96RN1 970 aa27.48■■□□□ 1.99
USP39-218ENST00000493829 GPRASP1Q5JY77 1395 aa27.46■■□□□ 1.99
USP39-218ENST00000493829 STRCQ7RTU9 1775 aa27.44■■□□□ 1.98
USP39-218ENST00000493829 DIP2AQ14689 1571 aa27.44■■□□□ 1.98
USP39-218ENST00000493829 MED14O60244 1454 aa27.44■■□□□ 1.98
USP39-218ENST00000493829 METP08581 1390 aa27.43■■□□□ 1.98
USP39-218ENST00000493829 AEBP2Q6ZN18 517 aaPredicted RBP27.43■■□□□ 1.98
USP39-218ENST00000493829 USP47Q96K76 1375 aa27.41■■□□□ 1.98
USP39-218ENST00000493829 HIRIP3Q9BW71 556 aaPredicted RBP27.4■■□□□ 1.98
USP39-218ENST00000493829 STK26Q9P289 416 aa27.4■■□□□ 1.98
USP39-218ENST00000493829 YTHDC2Q9H6S0 1430 aaKnown RBP27.37■■□□□ 1.97
USP39-218ENST00000493829 TRAK1Q9UPV9 953 aa27.36■■□□□ 1.97
USP39-218ENST00000493829 HSPA5P11021 654 aaKnown RBP27.36■■□□□ 1.97
USP39-218ENST00000493829 EIF4G2P78344 907 aaKnown RBP eCLIP27.36■■□□□ 1.97
USP39-218ENST00000493829 ARHGEF28Q8N1W1 1705 aaKnown RBP27.34■■□□□ 1.97
USP39-218ENST00000493829 TBX22Q9Y458 520 aa27.34■■□□□ 1.97
USP39-218ENST00000493829 PTPRUQ92729 1446 aa27.32■■□□□ 1.96
USP39-218ENST00000493829 LRPPRCP42704 1394 aaKnown RBP27.32■■□□□ 1.96
USP39-218ENST00000493829 KNDC1Q76NI1 1749 aa27.3■■□□□ 1.96
USP39-218ENST00000493829 EIF3AQ14152 1382 aaKnown RBP27.3■■□□□ 1.96
USP39-218ENST00000493829 XRN1Q8IZH2 1706 aaKnown RBP27.28■■□□□ 1.96
USP39-218ENST00000493829 ST20-MTHFSA0A0A6YYL1 179 aa27.27■■□□□ 1.96
USP39-218ENST00000493829 QRICH2Q9H0J4 1663 aa27.27■■□□□ 1.96
USP39-218ENST00000493829 CPS1P31327 1500 aa27.26■■□□□ 1.96
USP39-218ENST00000493829 CHD2O14647 1828 aaKnown RBP27.25■■□□□ 1.95
USP39-218ENST00000493829 SAFB2Q14151 953 aaKnown RBP eCLIP27.24■■□□□ 1.95
USP39-218ENST00000493829 AMOTL2Q9Y2J4 779 aa27.24■■□□□ 1.95
USP39-218ENST00000493829 DLC1Q96QB1 1528 aa27.24■■□□□ 1.95
USP39-218ENST00000493829 PIK3R4Q99570 1358 aa27.24■■□□□ 1.95
USP39-218ENST00000493829 ABCC11Q96J66 1382 aa27.23■■□□□ 1.95
USP39-218ENST00000493829 TECPR2O15040 1411 aa27.22■■□□□ 1.95
USP39-218ENST00000493829 PRAM1Q96QH2 718 aa27.22■■□□□ 1.95
USP39-218ENST00000493829 CENPJQ9HC77 1338 aaPredicted RBP27.22■■□□□ 1.95
USP39-218ENST00000493829 ROBO2Q9HCK4 1378 aa27.22■■□□□ 1.95
USP39-218ENST00000493829 PLEKHH1Q9ULM0 1364 aa27.22■■□□□ 1.95
USP39-218ENST00000493829 NWD1Q149M9 1564 aa27.21■■□□□ 1.95
USP39-218ENST00000493829 KCNA6P17658 529 aa27.21■■□□□ 1.95
USP39-218ENST00000493829 POGKQ9P215 609 aa27.21■■□□□ 1.95
USP39-218ENST00000493829 WAPLQ7Z5K2 1190 aa27.2■■□□□ 1.94
USP39-218ENST00000493829 STRCP1A6NGW2 1772 aa27.18■■□□□ 1.94
USP39-218ENST00000493829 PTCH1Q13635 1447 aa27.17■■□□□ 1.94
USP39-218ENST00000493829 ZNF316A6NFI3 1004 aaPredicted RBP27.17■■□□□ 1.94
USP39-218ENST00000493829 TESK2Q96S53 571 aa27.14■■□□□ 1.94
USP39-218ENST00000493829 DMRT2Q9Y5R5 561 aa27.14■■□□□ 1.94
USP39-218ENST00000493829 FAM135BQ49AJ0 1406 aa27.14■■□□□ 1.94
USP39-218ENST00000493829 MINK1Q8N4C8 1332 aaPredicted RBP27.14■■□□□ 1.93
USP39-218ENST00000493829 ZNF335Q9H4Z2 1342 aaPredicted RBP27.12■■□□□ 1.93
USP39-218ENST00000493829 RBM33Q96EV2 1170 aaKnown RBP27.12■■□□□ 1.93
USP39-218ENST00000493829 DISP3Q9P2K9 1392 aa27.11■■□□□ 1.93
USP39-218ENST00000493829 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.1■■□□□ 1.93
USP39-218ENST00000493829 NKTRP30414 1462 aaKnown RBP27.1■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms