RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 GFRA3O60609 400 aa12.05□□□□□ -0.48
SMC4-223ENST00000493695 RCCD1A6NED2 376 aa12.04□□□□□ -0.48
SMC4-223ENST00000493695 HAP1P54257 671 aaPredicted RBP12.03□□□□□ -0.48
SMC4-223ENST00000493695 TMEM134Q9H6X4 195 aa12.03□□□□□ -0.48
SMC4-223ENST00000493695 ZPR1O75312 459 aa12.02□□□□□ -0.49
SMC4-223ENST00000493695 KMT5BQ4FZB7 885 aa12.02□□□□□ -0.49
SMC4-223ENST00000493695 SMYD5Q6GMV2 418 aa12.02□□□□□ -0.49
SMC4-223ENST00000493695 RBM26Q5T8P6 1007 aaKnown RBP12.01□□□□□ -0.49
SMC4-223ENST00000493695 BLOC1S3Q6QNY0 202 aa12.01□□□□□ -0.49
SMC4-223ENST00000493695 CFHP08603 1231 aa12□□□□□ -0.49
SMC4-223ENST00000493695 LAPTM4AQ15012 233 aa12□□□□□ -0.49
SMC4-223ENST00000493695 OATP04181 439 aa11.97□□□□□ -0.49
SMC4-223ENST00000493695 V9GY48 417 aaPredicted RBP11.97□□□□□ -0.49
SMC4-223ENST00000493695 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.96□□□□□ -0.49
SMC4-223ENST00000493695 TLL1O43897 1013 aa11.96□□□□□ -0.49
SMC4-223ENST00000493695 HIC1Q14526 733 aa11.95□□□□□ -0.5
SMC4-223ENST00000493695 RSPH4AQ5TD94 716 aa11.94□□□□□ -0.5
SMC4-223ENST00000493695 TESPA1A2RU30 521 aaPredicted RBP11.93□□□□□ -0.5
SMC4-223ENST00000493695 ACTN4O43707 911 aaKnown RBP11.93□□□□□ -0.5
SMC4-223ENST00000493695 PXYLP1Q8TE99 480 aa11.92□□□□□ -0.5
SMC4-223ENST00000493695 TMUB1Q9BVT8 246 aa11.92□□□□□ -0.5
SMC4-223ENST00000493695 PDZRN3Q9UPQ7 1066 aa11.92□□□□□ -0.5
SMC4-223ENST00000493695 SLC10A3P09131 477 aa11.9□□□□□ -0.5
SMC4-223ENST00000493695 METTL3Q86U44 580 aaKnown RBP11.9□□□□□ -0.5
SMC4-223ENST00000493695 RDH13Q8NBN7 331 aa11.9□□□□□ -0.5
SMC4-223ENST00000493695 RNF223E7ERA6 249 aa11.89□□□□□ -0.51
SMC4-223ENST00000493695 NRG2O14511 850 aaPredicted RBP11.89□□□□□ -0.51
SMC4-223ENST00000493695 GNPATO15228 680 aa11.89□□□□□ -0.51
SMC4-223ENST00000493695 NR1I2O75469 434 aa11.89□□□□□ -0.51
SMC4-223ENST00000493695 TRAF7Q6Q0C0 670 aa11.89□□□□□ -0.51
SMC4-223ENST00000493695 S1PR4O95977 384 aa11.88□□□□□ -0.51
SMC4-223ENST00000493695 FECHP22830 423 aa11.88□□□□□ -0.51
SMC4-223ENST00000493695 PPEF1O14829 653 aaPredicted RBP11.87□□□□□ -0.51
SMC4-223ENST00000493695 SLC19A1P41440 591 aa11.87□□□□□ -0.51
SMC4-223ENST00000493695 PUS10Q3MIT2 529 aaKnown RBP11.87□□□□□ -0.51
SMC4-223ENST00000493695 DDX11L8A8MPP1 907 aa11.85□□□□□ -0.51
SMC4-223ENST00000493695 NLRP7Q8WX94 980 aa11.85□□□□□ -0.51
SMC4-223ENST00000493695 GPIHBP1Q8IV16 184 aa11.84□□□□□ -0.51
SMC4-223ENST00000493695 ADH1BP00325 375 aa11.83□□□□□ -0.52
SMC4-223ENST00000493695 SCUBE3Q8IX30 993 aa11.82□□□□□ -0.52
SMC4-223ENST00000493695 SLC6A16Q9GZN6 736 aa11.82□□□□□ -0.52
SMC4-223ENST00000493695 ANKLE1Q8NAG6 615 aa11.81□□□□□ -0.52
SMC4-223ENST00000493695 DAXXQ9UER7 740 aaPredicted RBP11.81□□□□□ -0.52
SMC4-223ENST00000493695 SPSB2Q99619 263 aa11.79□□□□□ -0.52
SMC4-223ENST00000493695 TULP1O00294 542 aaPredicted RBP11.78□□□□□ -0.52
SMC4-223ENST00000493695 KDM2AQ9Y2K7 1162 aa11.78□□□□□ -0.52
SMC4-223ENST00000493695 LCE2BO14633 110 aa11.77□□□□□ -0.53
SMC4-223ENST00000493695 SPRYD7Q5W111 196 aa11.77□□□□□ -0.53
SMC4-223ENST00000493695 GPR37O15354 613 aa11.76□□□□□ -0.53
SMC4-223ENST00000493695 SULF1Q8IWU6 871 aa11.76□□□□□ -0.53
SMC4-223ENST00000493695 FUT2Q10981 343 aa11.75□□□□□ -0.53
SMC4-223ENST00000493695 ZNF697Q5TEC3 545 aa11.75□□□□□ -0.53
SMC4-223ENST00000493695 PKDCCQ504Y2 493 aa11.74□□□□□ -0.53
SMC4-223ENST00000493695 LIAT1Q6ZQX7 453 aa11.74□□□□□ -0.53
SMC4-223ENST00000493695 ZNF598Q86UK7 904 aaKnown RBP11.74□□□□□ -0.53
SMC4-223ENST00000493695 TNFRSF10AO00220 468 aa11.73□□□□□ -0.53
SMC4-223ENST00000493695 EMID1Q96A84 441 aaPredicted RBP11.73□□□□□ -0.53
SMC4-223ENST00000493695 ATP6V1AP38606 617 aa11.72□□□□□ -0.53
SMC4-223ENST00000493695 PHOX2BQ99453 314 aa11.72□□□□□ -0.53
SMC4-223ENST00000493695 MORN1Q5T089 497 aa11.7□□□□□ -0.54
SMC4-223ENST00000493695 ZNF787Q6DD87 383 aa11.7□□□□□ -0.54
SMC4-223ENST00000493695 FMNL1O95466 1100 aaPredicted RBP11.69□□□□□ -0.54
SMC4-223ENST00000493695 GCGRP47871 477 aa11.69□□□□□ -0.54
SMC4-223ENST00000493695 FOXC1Q12948 553 aa11.69□□□□□ -0.54
SMC4-223ENST00000493695 TRIM67Q6ZTA4 783 aa11.69□□□□□ -0.54
SMC4-223ENST00000493695 FAM187AA6NFU0 413 aa11.68□□□□□ -0.54
SMC4-223ENST00000493695 PLA2G2CQ5R387 149 aa11.68□□□□□ -0.54
SMC4-223ENST00000493695 SLC27A5Q9Y2P5 690 aa11.68□□□□□ -0.54
SMC4-223ENST00000493695 GRIPAP1Q4V328 841 aa11.67□□□□□ -0.54
SMC4-223ENST00000493695 FCF1Q9Y324 198 aaKnown RBP11.66□□□□□ -0.54
SMC4-223ENST00000493695 VSIG10Q8N0Z9 540 aa11.65□□□□□ -0.54
SMC4-223ENST00000493695 ZBTB24O43167 697 aaPredicted RBP11.62□□□□□ -0.55
SMC4-223ENST00000493695 DGAT1O75907 488 aa11.62□□□□□ -0.55
SMC4-223ENST00000493695 PRR20EP86478 221 aa11.62□□□□□ -0.55
SMC4-223ENST00000493695 PRR20CP86479 221 aa11.62□□□□□ -0.55
SMC4-223ENST00000493695 PRR20DP86480 221 aa11.62□□□□□ -0.55
SMC4-223ENST00000493695 PRR20BP86481 221 aa11.62□□□□□ -0.55
SMC4-223ENST00000493695 PRR20AP86496 221 aa11.62□□□□□ -0.55
SMC4-223ENST00000493695 MAP2K5Q13163 448 aa11.62□□□□□ -0.55
SMC4-223ENST00000493695 PRDM9Q9NQV7 894 aa11.62□□□□□ -0.55
SMC4-223ENST00000493695 CD2BP2O95400 341 aaKnown RBP11.61□□□□□ -0.55
SMC4-223ENST00000493695 MDM2Q00987 491 aaPredicted RBP11.61□□□□□ -0.55
SMC4-223ENST00000493695 FAM160A2Q8N612 972 aaPredicted RBP11.61□□□□□ -0.55
SMC4-223ENST00000493695 THAP11Q96EK4 314 aa11.61□□□□□ -0.55
SMC4-223ENST00000493695 GDF9O60383 454 aa11.6□□□□□ -0.55
SMC4-223ENST00000493695 MYT1Q01538 1121 aa11.6□□□□□ -0.55
SMC4-223ENST00000493695 RNF19BQ6ZMZ0 732 aa11.6□□□□□ -0.55
SMC4-223ENST00000493695 KRI1Q8N9T8 703 aaKnown RBP11.6□□□□□ -0.55
SMC4-223ENST00000493695 IRF6O14896 467 aa11.58□□□□□ -0.56
SMC4-223ENST00000493695 BRICD5Q6PL45 260 aa11.58□□□□□ -0.56
SMC4-223ENST00000493695 RPIAP49247 311 aa11.57□□□□□ -0.56
SMC4-223ENST00000493695 Q3C1V9 767 aa11.57□□□□□ -0.56
SMC4-223ENST00000493695 KDM4AO75164 1064 aa11.56□□□□□ -0.56
SMC4-223ENST00000493695 CD46P15529 392 aa11.55□□□□□ -0.56
SMC4-223ENST00000493695 CYP4X1Q8N118 509 aa11.55□□□□□ -0.56
SMC4-223ENST00000493695 SALL2Q9Y467 1007 aaPredicted RBP11.55□□□□□ -0.56
SMC4-223ENST00000493695 MINK1Q8N4C8 1332 aaPredicted RBP11.55□□□□□ -0.56
SMC4-223ENST00000493695 CCDC102AQ96A19 550 aa11.54□□□□□ -0.56
SMC4-223ENST00000493695 PKD2L1Q9P0L9 805 aa11.54□□□□□ -0.56
SMC4-223ENST00000493695 ST8SIA5O15466 376 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms