RNA–Protein interactions for RNA: ENST00000491128.5

SMPD4-219, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 2,570 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-219ENST00000491128 ZC3H13Q5T200 1668 aaKnown RBP19.41■□□□□ 0.7
SMPD4-219ENST00000491128 KIF1BO60333 1816 aa19.41■□□□□ 0.7
SMPD4-219ENST00000491128 ERVK-7P63135 1459 aa19.41■□□□□ 0.7
SMPD4-219ENST00000491128 MADDQ8WXG6 1647 aa19.4■□□□□ 0.7
SMPD4-219ENST00000491128 PREX1Q8TCU6 1659 aa19.38■□□□□ 0.69
SMPD4-219ENST00000491128 GPRASP1Q5JY77 1395 aa19.38■□□□□ 0.69
SMPD4-219ENST00000491128 TESK2Q96S53 571 aa19.35■□□□□ 0.69
SMPD4-219ENST00000491128 TRAK1Q9UPV9 953 aa19.35■□□□□ 0.69
SMPD4-219ENST00000491128 PIK3C2BO00750 1634 aa19.34■□□□□ 0.69
SMPD4-219ENST00000491128 ANP32CO43423 234 aa19.34■□□□□ 0.69
SMPD4-219ENST00000491128 VGFO15240 615 aaPredicted RBP19.33■□□□□ 0.69
SMPD4-219ENST00000491128 STAC3Q96MF2 364 aa19.33■□□□□ 0.69
SMPD4-219ENST00000491128 DISP3Q9P2K9 1392 aa19.32■□□□□ 0.68
SMPD4-219ENST00000491128 MYOM2P54296 1465 aa19.32■□□□□ 0.68
SMPD4-219ENST00000491128 RPGRIP1LQ68CZ1 1315 aa19.32■□□□□ 0.68
SMPD4-219ENST00000491128 C14orf93Q9H972 538 aaKnown RBP19.31■□□□□ 0.68
SMPD4-219ENST00000491128 STK26Q9P289 416 aa19.31■□□□□ 0.68
SMPD4-219ENST00000491128 PIK3C2GO75747 1445 aa19.29■□□□□ 0.68
SMPD4-219ENST00000491128 SAFB2Q14151 953 aaKnown RBP eCLIP19.29■□□□□ 0.68
SMPD4-219ENST00000491128 MYO5BQ9ULV0 1848 aa19.29■□□□□ 0.68
SMPD4-219ENST00000491128 NEXMIFQ5QGS0 1516 aa19.29■□□□□ 0.68
SMPD4-219ENST00000491128 NEURL4Q96JN8 1562 aa19.28■□□□□ 0.68
SMPD4-219ENST00000491128 TNRQ92752 1358 aa19.28■□□□□ 0.68
SMPD4-219ENST00000491128 TMEM131LA2VDJ0 1609 aa19.28■□□□□ 0.68
SMPD4-219ENST00000491128 NRXN1Q9ULB1 1477 aa19.27■□□□□ 0.68
SMPD4-219ENST00000491128 IFT172Q9UG01 1749 aa19.27■□□□□ 0.68
SMPD4-219ENST00000491128 SPATA31D1Q6ZQQ2 1576 aa19.27■□□□□ 0.68
SMPD4-219ENST00000491128 SCAF11Q99590 1463 aaKnown RBP19.26■□□□□ 0.67
SMPD4-219ENST00000491128 PPLO60437 1756 aa19.26■□□□□ 0.67
SMPD4-219ENST00000491128 A2ML1A8K2U0 1454 aa19.25■□□□□ 0.67
SMPD4-219ENST00000491128 TMF1P82094 1093 aa19.25■□□□□ 0.67
SMPD4-219ENST00000491128 BCANQ96GW7 911 aa19.24■□□□□ 0.67
SMPD4-219ENST00000491128 CCDC184Q52MB2 194 aa19.22■□□□□ 0.67
SMPD4-219ENST00000491128 RIMS2Q9UQ26 1411 aa19.21■□□□□ 0.67
SMPD4-219ENST00000491128 LAMC1P11047 1609 aa19.19■□□□□ 0.66
SMPD4-219ENST00000491128 PRKRIP1Q9H875 184 aaPredicted RBP19.19■□□□□ 0.66
SMPD4-219ENST00000491128 CENPJQ9HC77 1338 aaPredicted RBP19.18■□□□□ 0.66
SMPD4-219ENST00000491128 IQGAP1P46940 1657 aa19.18■□□□□ 0.66
SMPD4-219ENST00000491128 ADGRB1O14514 1584 aa19.18■□□□□ 0.66
SMPD4-219ENST00000491128 EIF3AQ14152 1382 aaKnown RBP19.17■□□□□ 0.66
SMPD4-219ENST00000491128 LTKP29376 864 aa19.17■□□□□ 0.66
SMPD4-219ENST00000491128 PANK3Q9H999 370 aa19.17■□□□□ 0.66
SMPD4-219ENST00000491128 FER1L4A9Z1Z3 1794 aa19.15■□□□□ 0.66
SMPD4-219ENST00000491128 C3P01024 1663 aa19.14■□□□□ 0.65
SMPD4-219ENST00000491128 ZFYVE9O95405 1425 aa19.14■□□□□ 0.65
SMPD4-219ENST00000491128 KIAA1210Q9ULL0 1709 aa19.13■□□□□ 0.65
SMPD4-219ENST00000491128 TXNDC2Q86VQ3 553 aa19.13■□□□□ 0.65
SMPD4-219ENST00000491128 POLR1AO95602 1720 aaPredicted RBP19.13■□□□□ 0.65
SMPD4-219ENST00000491128 PRAM1Q96QH2 718 aa19.13■□□□□ 0.65
SMPD4-219ENST00000491128 TMEM2Q9UHN6 1383 aa19.12■□□□□ 0.65
SMPD4-219ENST00000491128 WAPLQ7Z5K2 1190 aa19.12■□□□□ 0.65
SMPD4-219ENST00000491128 SLC26A8Q96RN1 970 aa19.12■□□□□ 0.65
SMPD4-219ENST00000491128 ASXL1Q8IXJ9 1541 aa19.12■□□□□ 0.65
SMPD4-219ENST00000491128 CC2D1BQ5T0F9 858 aaKnown RBP19.12■□□□□ 0.65
SMPD4-219ENST00000491128 MINK1Q8N4C8 1332 aaPredicted RBP19.11■□□□□ 0.65
SMPD4-219ENST00000491128 POGKQ9P215 609 aa19.1■□□□□ 0.65
SMPD4-219ENST00000491128 METP08581 1390 aa19.1■□□□□ 0.65
SMPD4-219ENST00000491128 CCER2I3L3R5 266 aa19.1■□□□□ 0.65
SMPD4-219ENST00000491128 PTPRMP28827 1452 aa19.09■□□□□ 0.65
SMPD4-219ENST00000491128 PER1O15534 1290 aaPredicted RBP19.09■□□□□ 0.65
SMPD4-219ENST00000491128 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.09■□□□□ 0.65
SMPD4-219ENST00000491128 TMC1Q8TDI8 760 aa19.09■□□□□ 0.65
SMPD4-219ENST00000491128 SETBP1Q9Y6X0 1596 aa19.09■□□□□ 0.65
SMPD4-219ENST00000491128 ALKQ9UM73 1620 aa19.09■□□□□ 0.65
SMPD4-219ENST00000491128 RIMS1Q86UR5 1692 aaKnown RBP19.09■□□□□ 0.65
SMPD4-219ENST00000491128 CABP2Q9NPB3 220 aa19.08■□□□□ 0.65
SMPD4-219ENST00000491128 YTHDC2Q9H6S0 1430 aaKnown RBP19.08■□□□□ 0.65
SMPD4-219ENST00000491128 SENP3-EIF4A1A0A087X0R7 540 aa19.06■□□□□ 0.64
SMPD4-219ENST00000491128 SLC12A5Q9H2X9 1139 aa19.06■□□□□ 0.64
SMPD4-219ENST00000491128 MRS2Q9HD23 443 aa19.06■□□□□ 0.64
SMPD4-219ENST00000491128 UBR1Q8IWV7 1749 aa19.06■□□□□ 0.64
SMPD4-219ENST00000491128 PLEKHH1Q9ULM0 1364 aa19.05■□□□□ 0.64
SMPD4-219ENST00000491128 HDGFP51858 240 aaKnown RBP19.05■□□□□ 0.64
SMPD4-219ENST00000491128 CDCA8Q53HL2 280 aa19.05■□□□□ 0.64
SMPD4-219ENST00000491128 FAM9BQ8IZU0 186 aa19.05■□□□□ 0.64
SMPD4-219ENST00000491128 NLRP1Q9C000 1473 aa19.05■□□□□ 0.64
SMPD4-219ENST00000491128 EID1Q9Y6B2 187 aa19.04■□□□□ 0.64
SMPD4-219ENST00000491128 CENPBP07199 599 aaPredicted RBP19.04■□□□□ 0.64
SMPD4-219ENST00000491128 THEMISQ8N1K5 641 aaPredicted RBP19.04■□□□□ 0.64
SMPD4-219ENST00000491128 SRPK2P78362 688 aaKnown RBP19.03■□□□□ 0.64
SMPD4-219ENST00000491128 CARD14Q9BXL6 1004 aa19.01■□□□□ 0.63
SMPD4-219ENST00000491128 KNSTRNQ9Y448 316 aa19.01■□□□□ 0.63
SMPD4-219ENST00000491128 QRICH2Q9H0J4 1663 aa19■□□□□ 0.63
SMPD4-219ENST00000491128 PELP1Q8IZL8 1130 aaKnown RBP18.99■□□□□ 0.63
SMPD4-219ENST00000491128 NRXN3Q9Y4C0 1643 aa18.99■□□□□ 0.63
SMPD4-219ENST00000491128 EVC2Q86UK5 1308 aa18.99■□□□□ 0.63
SMPD4-219ENST00000491128 ARHGEF28Q8N1W1 1705 aaKnown RBP18.98■□□□□ 0.63
SMPD4-219ENST00000491128 ADAMTS13Q76LX8 1427 aa18.98■□□□□ 0.63
SMPD4-219ENST00000491128 ADAMTSL3P82987 1691 aa18.98■□□□□ 0.63
SMPD4-219ENST00000491128 SBNO2Q9Y2G9 1366 aa18.98■□□□□ 0.63
SMPD4-219ENST00000491128 LRPPRCP42704 1394 aaKnown RBP18.97■□□□□ 0.63
SMPD4-219ENST00000491128 CDK19Q9BWU1 502 aa18.96■□□□□ 0.63
SMPD4-219ENST00000491128 MYO3AQ8NEV4 1616 aa18.96■□□□□ 0.63
SMPD4-219ENST00000491128 KTN1Q86UP2 1357 aaKnown RBP18.96■□□□□ 0.63
SMPD4-219ENST00000491128 TULP4Q9NRJ4 1543 aa18.96■□□□□ 0.63
SMPD4-219ENST00000491128 NUTM2FA1L443 756 aa18.96■□□□□ 0.63
SMPD4-219ENST00000491128 NCKAP5LQ9HCH0 1330 aa18.95■□□□□ 0.62
SMPD4-219ENST00000491128 PLEKHG1Q9ULL1 1385 aa18.95■□□□□ 0.62
SMPD4-219ENST00000491128 AMER1Q5JTC6 1135 aaPredicted RBP18.94■□□□□ 0.62
SMPD4-219ENST00000491128 RBM33Q96EV2 1170 aaKnown RBP18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms