RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 VPS53Q5VIR6 699 aa21.58■■□□□ 1.05
NPHP4-209ENST00000489180 MARCH6O60337 910 aa21.58■■□□□ 1.04
NPHP4-209ENST00000489180 REC8O95072 547 aa21.58■■□□□ 1.04
NPHP4-209ENST00000489180 DIAPH1O60610 1272 aaKnown RBP21.57■■□□□ 1.04
NPHP4-209ENST00000489180 PANK1Q8TE04 598 aa21.57■■□□□ 1.04
NPHP4-209ENST00000489180 CCDC7Q96M83 1385 aa21.57■■□□□ 1.04
NPHP4-209ENST00000489180 TMX4Q9H1E5 349 aaPredicted RBP21.57■■□□□ 1.04
NPHP4-209ENST00000489180 LNPKQ9C0E8 428 aa21.56■■□□□ 1.04
NPHP4-209ENST00000489180 FAM13BQ9NYF5 915 aa21.56■■□□□ 1.04
NPHP4-209ENST00000489180 C1orf141Q5JVX7 400 aa21.55■■□□□ 1.04
NPHP4-209ENST00000489180 UACAQ9BZF9 1416 aa21.55■■□□□ 1.04
NPHP4-209ENST00000489180 NFKBIBQ15653 356 aa21.55■■□□□ 1.04
NPHP4-209ENST00000489180 GTF2E1P29083 439 aaPredicted RBP21.55■■□□□ 1.04
NPHP4-209ENST00000489180 C9orf78Q9NZ63 289 aaPredicted RBP21.54■■□□□ 1.04
NPHP4-209ENST00000489180 G3V3G9 751 aa21.53■■□□□ 1.04
NPHP4-209ENST00000489180 DCAF8Q5TAQ9 597 aa21.53■■□□□ 1.04
NPHP4-209ENST00000489180 FBXW7Q969H0 707 aa21.53■■□□□ 1.04
NPHP4-209ENST00000489180 CADPSQ9ULU8 1353 aa21.53■■□□□ 1.04
NPHP4-209ENST00000489180 TEFQ10587 303 aa21.53■■□□□ 1.04
NPHP4-209ENST00000489180 C22orf23Q9BZE7 217 aa21.53■■□□□ 1.04
NPHP4-209ENST00000489180 VGFO15240 615 aaPredicted RBP21.52■■□□□ 1.04
NPHP4-209ENST00000489180 RUNDC1Q96C34 613 aa21.52■■□□□ 1.04
NPHP4-209ENST00000489180 ZKSCAN1P17029 563 aaPredicted RBP21.52■■□□□ 1.04
NPHP4-209ENST00000489180 IFIT2P09913 472 aaKnown RBP21.51■■□□□ 1.03
NPHP4-209ENST00000489180 FOSBP53539 338 aa21.51■■□□□ 1.03
NPHP4-209ENST00000489180 RUFY2Q8WXA3 655 aa21.51■■□□□ 1.03
NPHP4-209ENST00000489180 ZNF771Q7L3S4 317 aaPredicted RBP21.51■■□□□ 1.03
NPHP4-209ENST00000489180 VPS37CA5D8V6 355 aaPredicted RBP21.51■■□□□ 1.03
NPHP4-209ENST00000489180 AKAP17AQ02040 695 aaKnown RBP21.51■■□□□ 1.03
NPHP4-209ENST00000489180 BICD2Q8TD16 824 aa21.51■■□□□ 1.03
NPHP4-209ENST00000489180 API5Q9BZZ5 524 aaKnown RBP21.5■■□□□ 1.03
NPHP4-209ENST00000489180 CNTLNQ9NXG0 1405 aa21.5■■□□□ 1.03
NPHP4-209ENST00000489180 TSR1Q2NL82 804 aaKnown RBP21.5■■□□□ 1.03
NPHP4-209ENST00000489180 FKBP5Q13451 457 aaPredicted RBP21.49■■□□□ 1.03
NPHP4-209ENST00000489180 HMOX1P09601 288 aa21.49■■□□□ 1.03
NPHP4-209ENST00000489180 BCL11BQ9C0K0 894 aaPredicted RBP21.49■■□□□ 1.03
NPHP4-209ENST00000489180 CEP89Q96ST8 783 aa21.48■■□□□ 1.03
NPHP4-209ENST00000489180 ZNF644Q9H582 1327 aaPredicted RBP21.47■■□□□ 1.03
NPHP4-209ENST00000489180 INTS3Q68E01 1043 aaKnown RBP21.47■■□□□ 1.03
NPHP4-209ENST00000489180 NEXNQ0ZGT2 675 aa21.47■■□□□ 1.03
NPHP4-209ENST00000489180 CDCA7LQ96GN5 454 aa21.47■■□□□ 1.03
NPHP4-209ENST00000489180 SYNE3Q6ZMZ3 975 aa21.47■■□□□ 1.03
NPHP4-209ENST00000489180 FAM43AQ8N2R8 423 aa21.46■■□□□ 1.03
NPHP4-209ENST00000489180 WASHC2AQ641Q2 1341 aa21.45■■□□□ 1.02
NPHP4-209ENST00000489180 TPM1P09493 284 aa21.45■■□□□ 1.02
NPHP4-209ENST00000489180 APPP05067 770 aa21.45■■□□□ 1.02
NPHP4-209ENST00000489180 SMC3Q9UQE7 1217 aa21.45■■□□□ 1.02
NPHP4-209ENST00000489180 ADAMTS8Q9UP79 889 aa21.45■■□□□ 1.02
NPHP4-209ENST00000489180 TRIM29Q14134 588 aa21.44■■□□□ 1.02
NPHP4-209ENST00000489180 HOMER1Q86YM7 354 aa21.44■■□□□ 1.02
NPHP4-209ENST00000489180 TTC5Q8N0Z6 440 aa21.44■■□□□ 1.02
NPHP4-209ENST00000489180 CPLX1O14810 134 aa21.43■■□□□ 1.02
NPHP4-209ENST00000489180 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.43■■□□□ 1.02
NPHP4-209ENST00000489180 NUCB2P80303 420 aa21.43■■□□□ 1.02
NPHP4-209ENST00000489180 PCMTD1Q96MG8 357 aaPredicted RBP21.42■■□□□ 1.02
NPHP4-209ENST00000489180 CHMP4CQ96CF2 233 aa21.42■■□□□ 1.02
NPHP4-209ENST00000489180 PRM3Q9NNZ6 103 aa21.42■■□□□ 1.02
NPHP4-209ENST00000489180 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.41■■□□□ 1.02
NPHP4-209ENST00000489180 GGNBP2Q9H3C7 697 aa21.41■■□□□ 1.02
NPHP4-209ENST00000489180 TPM2P07951 284 aa21.41■■□□□ 1.02
NPHP4-209ENST00000489180 ROCK1Q13464 1354 aa21.41■■□□□ 1.02
NPHP4-209ENST00000489180 G3BP1Q13283 466 aaKnown RBP eCLIP21.41■■□□□ 1.02
NPHP4-209ENST00000489180 CPLX2Q6PUV4 134 aaKnown RBP21.4■■□□□ 1.02
NPHP4-209ENST00000489180 TSPYL4Q9UJ04 414 aa21.4■■□□□ 1.02
NPHP4-209ENST00000489180 FGD6Q6ZV73 1430 aa21.4■■□□□ 1.02
NPHP4-209ENST00000489180 RAD21O60216 631 aa21.4■■□□□ 1.02
NPHP4-209ENST00000489180 SASS6Q6UVJ0 657 aa21.39■■□□□ 1.02
NPHP4-209ENST00000489180 RNF20Q5VTR2 975 aa21.39■■□□□ 1.01
NPHP4-209ENST00000489180 RNF214Q8ND24 703 aa21.39■■□□□ 1.01
NPHP4-209ENST00000489180 GPS2Q13227 327 aa21.39■■□□□ 1.01
NPHP4-209ENST00000489180 GNAI1P63096 354 aa21.39■■□□□ 1.01
NPHP4-209ENST00000489180 IFT57Q9NWB7 429 aa21.39■■□□□ 1.01
NPHP4-209ENST00000489180 R3HCC1Q9Y3T6 440 aaKnown RBP21.38■■□□□ 1.01
NPHP4-209ENST00000489180 WWC1Q8IX03 1113 aa21.37■■□□□ 1.01
NPHP4-209ENST00000489180 CDC45O75419 566 aa21.37■■□□□ 1.01
NPHP4-209ENST00000489180 CABP2Q9NPB3 220 aa21.37■■□□□ 1.01
NPHP4-209ENST00000489180 PTPRGP23470 1445 aa21.37■■□□□ 1.01
NPHP4-209ENST00000489180 BRPF3Q9ULD4 1205 aa21.37■■□□□ 1.01
NPHP4-209ENST00000489180 SETQ01105 290 aaPredicted RBP21.36■■□□□ 1.01
NPHP4-209ENST00000489180 NFXL1Q6ZNB6 911 aa21.36■■□□□ 1.01
NPHP4-209ENST00000489180 PATL2C9JE40 543 aaKnown RBP21.36■■□□□ 1.01
NPHP4-209ENST00000489180 NASPP49321 788 aaPredicted RBP21.36■■□□□ 1.01
NPHP4-209ENST00000489180 LRRFIP1Q32MZ4 808 aaKnown RBP21.36■■□□□ 1.01
NPHP4-209ENST00000489180 ATAD2BQ9ULI0 1458 aa21.36■■□□□ 1.01
NPHP4-209ENST00000489180 CCDC70Q6NSX1 233 aa21.36■■□□□ 1.01
NPHP4-209ENST00000489180 MYOM3Q5VTT5 1437 aa21.36■■□□□ 1.01
NPHP4-209ENST00000489180 EVA1CP58658 441 aa21.35■■□□□ 1.01
NPHP4-209ENST00000489180 TRAK2O60296 914 aa21.34■■□□□ 1.01
NPHP4-209ENST00000489180 MRE11P49959 708 aa21.34■■□□□ 1.01
NPHP4-209ENST00000489180 TRDNQ13061 729 aa21.33■■□□□ 1.01
NPHP4-209ENST00000489180 BRD4O60885 1362 aaPredicted RBP21.33■■□□□ 1.01
NPHP4-209ENST00000489180 DDX58O95786 925 aaKnown RBP21.33■■□□□ 1.01
NPHP4-209ENST00000489180 AIMP1Q12904 312 aaKnown RBP21.33■■□□□ 1
NPHP4-209ENST00000489180 CCDC27Q2M243 656 aa21.33■■□□□ 1
NPHP4-209ENST00000489180 SMARCA4P51532 1647 aa21.33■■□□□ 1
NPHP4-209ENST00000489180 TMEM132EQ6IEE7 984 aa21.33■■□□□ 1
NPHP4-209ENST00000489180 FANCD2Q9BXW9 1451 aa21.32■■□□□ 1
NPHP4-209ENST00000489180 CAVIN1Q6NZI2 390 aaKnown RBP21.32■■□□□ 1
NPHP4-209ENST00000489180 C1orf115Q9H7X2 142 aa21.32■■□□□ 1
NPHP4-209ENST00000489180 PDZRN3Q9UPQ7 1066 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms