RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 PTPN23Q9H3S7 1636 aa25.48■■□□□ 1.67
USP48-210ENST00000489108 SLC52A1Q9NWF4 448 aa25.46■■□□□ 1.67
USP48-210ENST00000489108 ADGRB3O60242 1522 aa25.45■■□□□ 1.66
USP48-210ENST00000489108 ANKRD30AQ9BXX3 1397 aa25.44■■□□□ 1.66
USP48-210ENST00000489108 CHD2O14647 1828 aaKnown RBP25.42■■□□□ 1.66
USP48-210ENST00000489108 COL16A1Q07092 1604 aaPredicted RBP25.39■■□□□ 1.66
USP48-210ENST00000489108 UPF1Q92900 1129 aaKnown RBP eCLIP25.38■■□□□ 1.65
USP48-210ENST00000489108 PLEKHG1Q9ULL1 1385 aa25.38■■□□□ 1.65
USP48-210ENST00000489108 ZFYVE9O95405 1425 aa25.37■■□□□ 1.65
USP48-210ENST00000489108 MYO5BQ9ULV0 1848 aa25.37■■□□□ 1.65
USP48-210ENST00000489108 PPP1R15AO75807 674 aaPredicted RBP25.37■■□□□ 1.65
USP48-210ENST00000489108 MEX3CQ5U5Q3 659 aaKnown RBP25.37■■□□□ 1.65
USP48-210ENST00000489108 LRP6O75581 1613 aa25.37■■□□□ 1.65
USP48-210ENST00000489108 HDGFP51858 240 aaKnown RBP25.36■■□□□ 1.65
USP48-210ENST00000489108 TRIM52Q96A61 297 aa25.36■■□□□ 1.65
USP48-210ENST00000489108 TBX22Q9Y458 520 aa25.36■■□□□ 1.65
USP48-210ENST00000489108 FGD6Q6ZV73 1430 aa25.36■■□□□ 1.65
USP48-210ENST00000489108 SPATA31A6Q5VVP1 1343 aa25.36■■□□□ 1.65
USP48-210ENST00000489108 ZNF772Q68DY9 489 aaPredicted RBP25.35■■□□□ 1.65
USP48-210ENST00000489108 C14orf37Q86TY3 774 aa25.35■■□□□ 1.65
USP48-210ENST00000489108 RIMS2Q9UQ26 1411 aa25.35■■□□□ 1.65
USP48-210ENST00000489108 APLP2Q06481 763 aa25.34■■□□□ 1.65
USP48-210ENST00000489108 NCOA3Q9Y6Q9 1424 aa25.32■■□□□ 1.64
USP48-210ENST00000489108 RPRD2Q5VT52 1461 aaKnown RBP25.3■■□□□ 1.64
USP48-210ENST00000489108 GCC2Q8IWJ2 1684 aa25.29■■□□□ 1.64
USP48-210ENST00000489108 CHGAP10645 457 aaKnown RBP25.29■■□□□ 1.64
USP48-210ENST00000489108 ATF3P18847 181 aa25.29■■□□□ 1.64
USP48-210ENST00000489108 NUTM2DQ5VT03 806 aaPredicted RBP25.29■■□□□ 1.64
USP48-210ENST00000489108 CADPS2Q86UW7 1296 aa25.29■■□□□ 1.64
USP48-210ENST00000489108 C19orf44Q9H6X5 657 aa25.29■■□□□ 1.64
USP48-210ENST00000489108 TMEM131LA2VDJ0 1609 aa25.29■■□□□ 1.64
USP48-210ENST00000489108 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.28■■□□□ 1.64
USP48-210ENST00000489108 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.27■■□□□ 1.64
USP48-210ENST00000489108 RXRBP28702 533 aa25.26■■□□□ 1.63
USP48-210ENST00000489108 AHDC1Q5TGY3 1603 aaPredicted RBP25.26■■□□□ 1.63
USP48-210ENST00000489108 NUTM2BA6NNL0 878 aaPredicted RBP25.25■■□□□ 1.63
USP48-210ENST00000489108 NUTM2EB1AL46 878 aaPredicted RBP25.25■■□□□ 1.63
USP48-210ENST00000489108 NUTM2AQ8IVF1 878 aaPredicted RBP25.25■■□□□ 1.63
USP48-210ENST00000489108 ADAMTS13Q76LX8 1427 aa25.25■■□□□ 1.63
USP48-210ENST00000489108 ADGRL2O95490 1459 aa25.25■■□□□ 1.63
USP48-210ENST00000489108 SHPRHQ149N8 1683 aa25.24■■□□□ 1.63
USP48-210ENST00000489108 ANKRD50Q9ULJ7 1429 aa25.24■■□□□ 1.63
USP48-210ENST00000489108 FAM50AQ14320 339 aaKnown RBP25.21■■□□□ 1.63
USP48-210ENST00000489108 BRINP3Q76B58 766 aa25.21■■□□□ 1.63
USP48-210ENST00000489108 AMOTL2Q9Y2J4 779 aa25.2■■□□□ 1.62
USP48-210ENST00000489108 PIK3R4Q99570 1358 aa25.19■■□□□ 1.62
USP48-210ENST00000489108 AFF2P51816 1311 aa25.16■■□□□ 1.62
USP48-210ENST00000489108 DIP2AQ14689 1571 aa25.16■■□□□ 1.62
USP48-210ENST00000489108 PTPRUQ92729 1446 aa25.15■■□□□ 1.62
USP48-210ENST00000489108 CDK12Q9NYV4 1490 aaPredicted RBP25.14■■□□□ 1.61
USP48-210ENST00000489108 E9PCH4 1651 aa25.12■■□□□ 1.61
USP48-210ENST00000489108 TRPM2O94759 1503 aa25.11■■□□□ 1.61
USP48-210ENST00000489108 SETD5Q9C0A6 1442 aa25.09■■□□□ 1.61
USP48-210ENST00000489108 ASXL1Q8IXJ9 1541 aa25.08■■□□□ 1.61
USP48-210ENST00000489108 LRRC59Q96AG4 307 aaKnown RBP25.08■■□□□ 1.61
USP48-210ENST00000489108 QTRT2Q9H974 415 aaKnown RBP25.08■■□□□ 1.61
USP48-210ENST00000489108 UNC13BO14795 1591 aa25.08■■□□□ 1.61
USP48-210ENST00000489108 C8orf37Q96NL8 207 aa25.07■■□□□ 1.6
USP48-210ENST00000489108 DCCP43146 1447 aa25.06■■□□□ 1.6
USP48-210ENST00000489108 DDX17Q92841 729 aaKnown RBP25.06■■□□□ 1.6
USP48-210ENST00000489108 MST1RQ04912 1400 aa25.05■■□□□ 1.6
USP48-210ENST00000489108 RBM6P78332 1123 aaKnown RBP25.05■■□□□ 1.6
USP48-210ENST00000489108 NHSL1Q5SYE7 1610 aa25.03■■□□□ 1.6
USP48-210ENST00000489108 RGS12O14924 1447 aa25.03■■□□□ 1.6
USP48-210ENST00000489108 XRN1Q8IZH2 1706 aaKnown RBP25■■□□□ 1.59
USP48-210ENST00000489108 PNPLA6Q8IY17 1366 aa25■■□□□ 1.59
USP48-210ENST00000489108 NUP155O75694 1391 aa24.99■■□□□ 1.59
USP48-210ENST00000489108 METP08581 1390 aa24.99■■□□□ 1.59
USP48-210ENST00000489108 IQGAP3Q86VI3 1631 aa24.99■■□□□ 1.59
USP48-210ENST00000489108 NRXN3Q9Y4C0 1643 aa24.99■■□□□ 1.59
USP48-210ENST00000489108 ADAMTS2O95450 1211 aa24.97■■□□□ 1.59
USP48-210ENST00000489108 NGLY1Q96IV0 654 aa24.97■■□□□ 1.59
USP48-210ENST00000489108 ZNF326Q5BKZ1 582 aaKnown RBP24.96■■□□□ 1.59
USP48-210ENST00000489108 SETBP1Q9Y6X0 1596 aa24.96■■□□□ 1.59
USP48-210ENST00000489108 ROCK1Q13464 1354 aa24.93■■□□□ 1.58
USP48-210ENST00000489108 ADGRL3Q9HAR2 1447 aa24.93■■□□□ 1.58
USP48-210ENST00000489108 SRCAPQ6ZRS2 3230 aa24.92■■□□□ 1.58
USP48-210ENST00000489108 NALCNQ8IZF0 1738 aa24.89■■□□□ 1.57
USP48-210ENST00000489108 USP21Q9UK80 565 aa24.88■■□□□ 1.57
USP48-210ENST00000489108 ATAD2Q6PL18 1390 aa24.87■■□□□ 1.57
USP48-210ENST00000489108 C1orf167Q5SNV9 1468 aa24.87■■□□□ 1.57
USP48-210ENST00000489108 ITGAEP38570 1179 aa24.86■■□□□ 1.57
USP48-210ENST00000489108 ORAI2Q96SN7 254 aa24.86■■□□□ 1.57
USP48-210ENST00000489108 SPHKAPQ2M3C7 1700 aa24.85■■□□□ 1.57
USP48-210ENST00000489108 SOS2Q07890 1332 aaPredicted RBP24.85■■□□□ 1.57
USP48-210ENST00000489108 TRPC5Q9UL62 973 aaPredicted RBP24.84■■□□□ 1.57
USP48-210ENST00000489108 FNBP4Q8N3X1 1017 aaPredicted RBP24.82■■□□□ 1.56
USP48-210ENST00000489108 ZRANB1Q9UGI0 708 aa24.81■■□□□ 1.56
USP48-210ENST00000489108 LAMC1P11047 1609 aa24.8■■□□□ 1.56
USP48-210ENST00000489108 NEXMIFQ5QGS0 1516 aa24.8■■□□□ 1.56
USP48-210ENST00000489108 PTCH1Q13635 1447 aa24.78■■□□□ 1.56
USP48-210ENST00000489108 ROBO2Q9HCK4 1378 aa24.77■■□□□ 1.56
USP48-210ENST00000489108 ATRNO75882 1429 aa24.77■■□□□ 1.56
USP48-210ENST00000489108 FOXD1Q16676 465 aa24.76■■□□□ 1.55
USP48-210ENST00000489108 CLTCL1P53675 1640 aa24.75■■□□□ 1.55
USP48-210ENST00000489108 CCDC125Q86Z20 511 aa24.72■■□□□ 1.55
USP48-210ENST00000489108 KIF1BO60333 1816 aa24.71■■□□□ 1.55
USP48-210ENST00000489108 VGFO15240 615 aaPredicted RBP24.71■■□□□ 1.55
USP48-210ENST00000489108 EP400Q96L91 3159 aa24.7■■□□□ 1.54
USP48-210ENST00000489108 COL22A1Q8NFW1 1626 aaPredicted RBP24.7■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms