RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 SCAPERQ9BY12 1400 aa23.76■■□□□ 1.39
VIM-206ENST00000487938 WDR43Q15061 677 aaKnown RBP eCLIP23.76■■□□□ 1.39
VIM-206ENST00000487938 ANP32AP39687 249 aaKnown RBP23.75■■□□□ 1.39
VIM-206ENST00000487938 STAC3Q96MF2 364 aa23.75■■□□□ 1.39
VIM-206ENST00000487938 INO80Q9ULG1 1556 aaPredicted RBP23.75■■□□□ 1.39
VIM-206ENST00000487938 NPM1P06748 294 aaKnown RBP eCLIP23.73■■□□□ 1.39
VIM-206ENST00000487938 CFAP70Q5T0N1 1121 aa23.73■■□□□ 1.39
VIM-206ENST00000487938 ZMYM4Q5VZL5 1548 aa23.73■■□□□ 1.39
VIM-206ENST00000487938 CRBNQ96SW2 442 aa23.73■■□□□ 1.39
VIM-206ENST00000487938 DEPDC5O75140 1603 aa23.72■■□□□ 1.39
VIM-206ENST00000487938 TET3O43151 1660 aa23.72■■□□□ 1.39
VIM-206ENST00000487938 IPO9Q96P70 1041 aaKnown RBP23.72■■□□□ 1.39
VIM-206ENST00000487938 TCERG1O14776 1098 aaKnown RBP23.7■■□□□ 1.38
VIM-206ENST00000487938 PLEKHH1Q9ULM0 1364 aa23.69■■□□□ 1.38
VIM-206ENST00000487938 ADGRF5Q8IZF2 1346 aa23.69■■□□□ 1.38
VIM-206ENST00000487938 C20orf194Q5TEA3 1177 aa23.68■■□□□ 1.38
VIM-206ENST00000487938 UGGT1Q9NYU2 1555 aa23.68■■□□□ 1.38
VIM-206ENST00000487938 SYNMO15061 1565 aa23.68■■□□□ 1.38
VIM-206ENST00000487938 ASXL1Q8IXJ9 1541 aa23.67■■□□□ 1.38
VIM-206ENST00000487938 EIF3AQ14152 1382 aaKnown RBP23.67■■□□□ 1.38
VIM-206ENST00000487938 NPM2Q86SE8 214 aaKnown RBP23.67■■□□□ 1.38
VIM-206ENST00000487938 CCDC146Q8IYE0 955 aa23.66■■□□□ 1.38
VIM-206ENST00000487938 VWDEQ8N2E2 1590 aa23.66■■□□□ 1.38
VIM-206ENST00000487938 PDE4AP27815 886 aa23.65■■□□□ 1.38
VIM-206ENST00000487938 NBR1Q14596 966 aa23.65■■□□□ 1.38
VIM-206ENST00000487938 DUSP27Q5VZP5 1158 aa23.65■■□□□ 1.38
VIM-206ENST00000487938 SKAP1Q86WV1 359 aa23.65■■□□□ 1.38
VIM-206ENST00000487938 ZBTB47Q9UFB7 747 aaPredicted RBP23.65■■□□□ 1.38
VIM-206ENST00000487938 GOLGA2Q08379 1002 aa23.62■■□□□ 1.37
VIM-206ENST00000487938 MYOM1P52179 1685 aa23.62■■□□□ 1.37
VIM-206ENST00000487938 ZNF518AQ6AHZ1 1483 aa23.61■■□□□ 1.37
VIM-206ENST00000487938 CHGAP10645 457 aaKnown RBP23.61■■□□□ 1.37
VIM-206ENST00000487938 ZNF521Q96K83 1311 aa23.6■■□□□ 1.37
VIM-206ENST00000487938 CARD14Q9BXL6 1004 aa23.6■■□□□ 1.37
VIM-206ENST00000487938 MROH1Q8NDA8 1641 aa23.6■■□□□ 1.37
VIM-206ENST00000487938 PIK3C2GO75747 1445 aa23.59■■□□□ 1.37
VIM-206ENST00000487938 BACH2Q9BYV9 841 aa23.59■■□□□ 1.37
VIM-206ENST00000487938 CD109Q6YHK3 1445 aa23.59■■□□□ 1.37
VIM-206ENST00000487938 MAP3K4Q9Y6R4 1608 aa23.58■■□□□ 1.37
VIM-206ENST00000487938 KIAA1210Q9ULL0 1709 aa23.58■■□□□ 1.37
VIM-206ENST00000487938 KDM5AP29375 1690 aaKnown RBP23.58■■□□□ 1.37
VIM-206ENST00000487938 ERVK-7P63135 1459 aa23.58■■□□□ 1.37
VIM-206ENST00000487938 NPC1L1Q9UHC9 1359 aa23.57■■□□□ 1.36
VIM-206ENST00000487938 MS4A1P11836 297 aa23.57■■□□□ 1.36
VIM-206ENST00000487938 KIDINS220Q9ULH0 1771 aa23.57■■□□□ 1.36
VIM-206ENST00000487938 ABCA6Q8N139 1617 aa23.57■■□□□ 1.36
VIM-206ENST00000487938 APAF1O14727 1248 aa23.57■■□□□ 1.36
VIM-206ENST00000487938 SLFN5Q08AF3 891 aa23.56■■□□□ 1.36
VIM-206ENST00000487938 BCL11AQ9H165 835 aa23.56■■□□□ 1.36
VIM-206ENST00000487938 SPINK5Q9NQ38 1064 aaPredicted RBP23.55■■□□□ 1.36
VIM-206ENST00000487938 KIF1BO60333 1816 aa23.55■■□□□ 1.36
VIM-206ENST00000487938 MYOM2P54296 1465 aa23.54■■□□□ 1.36
VIM-206ENST00000487938 CFAP74Q9C0B2 1584 aa23.54■■□□□ 1.36
VIM-206ENST00000487938 SLC24A1O60721 1099 aa23.53■■□□□ 1.36
VIM-206ENST00000487938 EFCAB6Q5THR3 1501 aa23.52■■□□□ 1.36
VIM-206ENST00000487938 NEURL4Q96JN8 1562 aa23.52■■□□□ 1.36
VIM-206ENST00000487938 POGZQ7Z3K3 1410 aa23.52■■□□□ 1.36
VIM-206ENST00000487938 GGT6Q6P531 493 aa23.52■■□□□ 1.36
VIM-206ENST00000487938 TRAK1Q9UPV9 953 aa23.52■■□□□ 1.36
VIM-206ENST00000487938 MROH2AA6NES4 1674 aa23.51■■□□□ 1.35
VIM-206ENST00000487938 NOS1P29475 1434 aa23.51■■□□□ 1.35
VIM-206ENST00000487938 PPRC1Q5VV67 1664 aaKnown RBP23.51■■□□□ 1.35
VIM-206ENST00000487938 CFAP65Q6ZU64 1925 aaKnown RBP23.49■■□□□ 1.35
VIM-206ENST00000487938 DEKP35659 375 aaKnown RBP23.49■■□□□ 1.35
VIM-206ENST00000487938 TRMT2AQ8IZ69 625 aaKnown RBP23.49■■□□□ 1.35
VIM-206ENST00000487938 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.48■■□□□ 1.35
VIM-206ENST00000487938 CENPJQ9HC77 1338 aaPredicted RBP23.48■■□□□ 1.35
VIM-206ENST00000487938 MLH3Q9UHC1 1453 aa23.48■■□□□ 1.35
VIM-206ENST00000487938 TMEM132EQ6IEE7 984 aa23.47■■□□□ 1.35
VIM-206ENST00000487938 KDM2BQ8NHM5 1336 aa23.47■■□□□ 1.35
VIM-206ENST00000487938 LMTK2Q8IWU2 1503 aa23.47■■□□□ 1.35
VIM-206ENST00000487938 DMRT2Q9Y5R5 561 aa23.47■■□□□ 1.35
VIM-206ENST00000487938 IFT172Q9UG01 1749 aa23.46■■□□□ 1.35
VIM-206ENST00000487938 TNNT2P45379 298 aaPredicted RBP23.46■■□□□ 1.35
VIM-206ENST00000487938 BCAR3O75815 825 aa23.45■■□□□ 1.34
VIM-206ENST00000487938 SLC12A5Q9H2X9 1139 aa23.45■■□□□ 1.34
VIM-206ENST00000487938 NRXN1Q9ULB1 1477 aa23.45■■□□□ 1.34
VIM-206ENST00000487938 CENPQQ7L2Z9 268 aaPredicted RBP23.43■■□□□ 1.34
VIM-206ENST00000487938 HECW2Q9P2P5 1572 aa23.42■■□□□ 1.34
VIM-206ENST00000487938 C14orf93Q9H972 538 aaKnown RBP23.42■■□□□ 1.34
VIM-206ENST00000487938 NUTM2DQ5VT03 806 aaPredicted RBP23.42■■□□□ 1.34
VIM-206ENST00000487938 NPATQ14207 1427 aa23.41■■□□□ 1.34
VIM-206ENST00000487938 FRMPD1Q5SYB0 1578 aa23.41■■□□□ 1.34
VIM-206ENST00000487938 E9PSI1 815 aa23.41■■□□□ 1.34
VIM-206ENST00000487938 MORC1Q86VD1 984 aa23.41■■□□□ 1.34
VIM-206ENST00000487938 NKTRP30414 1462 aaKnown RBP23.4■■□□□ 1.34
VIM-206ENST00000487938 NEO1Q92859 1461 aa23.4■■□□□ 1.34
VIM-206ENST00000487938 ADGRB3O60242 1522 aa23.4■■□□□ 1.34
VIM-206ENST00000487938 NSD3Q9BZ95 1437 aa23.39■■□□□ 1.34
VIM-206ENST00000487938 SBNO2Q9Y2G9 1366 aa23.39■■□□□ 1.34
VIM-206ENST00000487938 NEUROD2Q15784 382 aa23.38■■□□□ 1.33
VIM-206ENST00000487938 MYO3AQ8NEV4 1616 aa23.38■■□□□ 1.33
VIM-206ENST00000487938 LAS1LQ9Y4W2 734 aaKnown RBP23.37■■□□□ 1.33
VIM-206ENST00000487938 POLR3AO14802 1390 aaPredicted RBP23.36■■□□□ 1.33
VIM-206ENST00000487938 RTL5Q5HYW3 569 aaPredicted RBP23.36■■□□□ 1.33
VIM-206ENST00000487938 RAPGEF3O95398 923 aa23.36■■□□□ 1.33
VIM-206ENST00000487938 WWC1Q8IX03 1113 aa23.36■■□□□ 1.33
VIM-206ENST00000487938 RRP7AQ9Y3A4 280 aaKnown RBP23.35■■□□□ 1.33
VIM-206ENST00000487938 SETBP1Q9Y6X0 1596 aa23.35■■□□□ 1.33
VIM-206ENST00000487938 SENP3Q9H4L4 574 aaPredicted RBP23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms