RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 POLR1AO95602 1720 aaPredicted RBP20.13■□□□□ 0.81
CUX1-209ENST00000487284 ZNF142P52746 1687 aaPredicted RBP20.13■□□□□ 0.81
CUX1-209ENST00000487284 NEXMIFQ5QGS0 1516 aa20.12■□□□□ 0.81
CUX1-209ENST00000487284 KDM2AQ9Y2K7 1162 aa20.12■□□□□ 0.81
CUX1-209ENST00000487284 RALGAPBQ86X10 1494 aa20.11■□□□□ 0.81
CUX1-209ENST00000487284 TRPM1Q7Z4N2 1603 aa20.1■□□□□ 0.81
CUX1-209ENST00000487284 RPGRIP1LQ68CZ1 1315 aa20.08■□□□□ 0.81
CUX1-209ENST00000487284 MYOM2P54296 1465 aa20.08■□□□□ 0.8
CUX1-209ENST00000487284 PRAG1Q86YV5 1406 aa20.06■□□□□ 0.8
CUX1-209ENST00000487284 NUTM2DQ5VT03 806 aaPredicted RBP20.05■□□□□ 0.8
CUX1-209ENST00000487284 ZFYVE9O95405 1425 aa20.05■□□□□ 0.8
CUX1-209ENST00000487284 RIMS2Q9UQ26 1411 aa20.05■□□□□ 0.8
CUX1-209ENST00000487284 TMEM2Q9UHN6 1383 aa20.04■□□□□ 0.8
CUX1-209ENST00000487284 LAMC1P11047 1609 aa20.04■□□□□ 0.8
CUX1-209ENST00000487284 ADGRF5Q8IZF2 1346 aa20.04■□□□□ 0.8
CUX1-209ENST00000487284 EIF4G2P78344 907 aaKnown RBP eCLIP20.03■□□□□ 0.8
CUX1-209ENST00000487284 STAC3Q96MF2 364 aa20.03■□□□□ 0.8
CUX1-209ENST00000487284 NRXN1Q9ULB1 1477 aa20.03■□□□□ 0.8
CUX1-209ENST00000487284 SLIT1O75093 1534 aa20.03■□□□□ 0.8
CUX1-209ENST00000487284 ARHGAP23Q9P227 1491 aa20.02■□□□□ 0.8
CUX1-209ENST00000487284 HSPA5P11021 654 aaKnown RBP20.01■□□□□ 0.79
CUX1-209ENST00000487284 THEMISQ8N1K5 641 aaPredicted RBP20.01■□□□□ 0.79
CUX1-209ENST00000487284 HIRIP3Q9BW71 556 aaPredicted RBP20■□□□□ 0.79
CUX1-209ENST00000487284 VGFO15240 615 aaPredicted RBP20■□□□□ 0.79
CUX1-209ENST00000487284 PIK3C2GO75747 1445 aa19.99■□□□□ 0.79
CUX1-209ENST00000487284 KIAA1210Q9ULL0 1709 aa19.97■□□□□ 0.79
CUX1-209ENST00000487284 LTKP29376 864 aa19.96■□□□□ 0.79
CUX1-209ENST00000487284 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.96■□□□□ 0.79
CUX1-209ENST00000487284 SENP3Q9H4L4 574 aaPredicted RBP19.96■□□□□ 0.79
CUX1-209ENST00000487284 HDGFP51858 240 aaKnown RBP19.95■□□□□ 0.78
CUX1-209ENST00000487284 TXNDC2Q86VQ3 553 aa19.95■□□□□ 0.78
CUX1-209ENST00000487284 LMTK3Q96Q04 1460 aa19.94■□□□□ 0.78
CUX1-209ENST00000487284 NRXN3Q9Y4C0 1643 aa19.94■□□□□ 0.78
CUX1-209ENST00000487284 USP47Q96K76 1375 aa19.94■□□□□ 0.78
CUX1-209ENST00000487284 SCAF11Q99590 1463 aaKnown RBP19.94■□□□□ 0.78
CUX1-209ENST00000487284 IQGAP1P46940 1657 aa19.93■□□□□ 0.78
CUX1-209ENST00000487284 EID1Q9Y6B2 187 aa19.93■□□□□ 0.78
CUX1-209ENST00000487284 GPRASP1Q5JY77 1395 aa19.93■□□□□ 0.78
CUX1-209ENST00000487284 NBPF1Q3BBV0 1214 aa19.92■□□□□ 0.78
CUX1-209ENST00000487284 CFAP70Q5T0N1 1121 aa19.92■□□□□ 0.78
CUX1-209ENST00000487284 MIER1Q8N108 512 aa19.92■□□□□ 0.78
CUX1-209ENST00000487284 SETBP1Q9Y6X0 1596 aa19.92■□□□□ 0.78
CUX1-209ENST00000487284 ROCK2O75116 1388 aaKnown RBP19.91■□□□□ 0.78
CUX1-209ENST00000487284 SETD1AO15047 1707 aaKnown RBP19.9■□□□□ 0.78
CUX1-209ENST00000487284 PLEKHG1Q9ULL1 1385 aa19.9■□□□□ 0.78
CUX1-209ENST00000487284 ALKQ9UM73 1620 aa19.9■□□□□ 0.78
CUX1-209ENST00000487284 C14orf93Q9H972 538 aaKnown RBP19.9■□□□□ 0.78
CUX1-209ENST00000487284 HSPA2P54652 639 aa19.88■□□□□ 0.77
CUX1-209ENST00000487284 DDX10Q13206 875 aaKnown RBP19.88■□□□□ 0.77
CUX1-209ENST00000487284 ANKLE2Q86XL3 938 aa19.88■□□□□ 0.77
CUX1-209ENST00000487284 WASHC2AQ641Q2 1341 aa19.88■□□□□ 0.77
CUX1-209ENST00000487284 ASXL1Q8IXJ9 1541 aa19.88■□□□□ 0.77
CUX1-209ENST00000487284 CARD11Q9BXL7 1154 aa19.87■□□□□ 0.77
CUX1-209ENST00000487284 ADGRB1O14514 1584 aa19.87■□□□□ 0.77
CUX1-209ENST00000487284 CCDC7Q96M83 1385 aa19.86■□□□□ 0.77
CUX1-209ENST00000487284 BCANQ96GW7 911 aa19.86■□□□□ 0.77
CUX1-209ENST00000487284 ADAMTS13Q76LX8 1427 aa19.85■□□□□ 0.77
CUX1-209ENST00000487284 TMEM132EQ6IEE7 984 aa19.84■□□□□ 0.77
CUX1-209ENST00000487284 NCKAP5LQ9HCH0 1330 aa19.83■□□□□ 0.77
CUX1-209ENST00000487284 MED14O60244 1454 aa19.82■□□□□ 0.76
CUX1-209ENST00000487284 NPHP4O75161 1426 aaPredicted RBP19.81■□□□□ 0.76
CUX1-209ENST00000487284 C11orf95C9JLR9 678 aaPredicted RBP19.81■□□□□ 0.76
CUX1-209ENST00000487284 SLC26A8Q96RN1 970 aa19.81■□□□□ 0.76
CUX1-209ENST00000487284 DIP2AQ14689 1571 aa19.8■□□□□ 0.76
CUX1-209ENST00000487284 AEBP2Q6ZN18 517 aaPredicted RBP19.8■□□□□ 0.76
CUX1-209ENST00000487284 STRCQ7RTU9 1775 aa19.8■□□□□ 0.76
CUX1-209ENST00000487284 METP08581 1390 aa19.79■□□□□ 0.76
CUX1-209ENST00000487284 KIF7Q2M1P5 1343 aa19.79■□□□□ 0.76
CUX1-209ENST00000487284 YTHDC2Q9H6S0 1430 aaKnown RBP19.77■□□□□ 0.76
CUX1-209ENST00000487284 ARHGEF28Q8N1W1 1705 aaKnown RBP19.76■□□□□ 0.75
CUX1-209ENST00000487284 TBX22Q9Y458 520 aa19.76■□□□□ 0.75
CUX1-209ENST00000487284 ST20-MTHFSA0A0A6YYL1 179 aa19.74■□□□□ 0.75
CUX1-209ENST00000487284 TRAK1Q9UPV9 953 aa19.74■□□□□ 0.75
CUX1-209ENST00000487284 STK26Q9P289 416 aa19.74■□□□□ 0.75
CUX1-209ENST00000487284 KNDC1Q76NI1 1749 aa19.73■□□□□ 0.75
CUX1-209ENST00000487284 LRPPRCP42704 1394 aaKnown RBP19.73■□□□□ 0.75
CUX1-209ENST00000487284 PTPRUQ92729 1446 aa19.72■□□□□ 0.75
CUX1-209ENST00000487284 EIF3AQ14152 1382 aaKnown RBP19.71■□□□□ 0.75
CUX1-209ENST00000487284 CHD2O14647 1828 aaKnown RBP19.7■□□□□ 0.74
CUX1-209ENST00000487284 XRN1Q8IZH2 1706 aaKnown RBP19.7■□□□□ 0.74
CUX1-209ENST00000487284 ABCC11Q96J66 1382 aa19.7■□□□□ 0.74
CUX1-209ENST00000487284 PIK3R4Q99570 1358 aa19.69■□□□□ 0.74
CUX1-209ENST00000487284 CPS1P31327 1500 aa19.69■□□□□ 0.74
CUX1-209ENST00000487284 DLC1Q96QB1 1528 aa19.69■□□□□ 0.74
CUX1-209ENST00000487284 TECPR2O15040 1411 aa19.69■□□□□ 0.74
CUX1-209ENST00000487284 QRICH2Q9H0J4 1663 aa19.68■□□□□ 0.74
CUX1-209ENST00000487284 ANP32CO43423 234 aa19.66■□□□□ 0.74
CUX1-209ENST00000487284 AMOTL2Q9Y2J4 779 aa19.66■□□□□ 0.74
CUX1-209ENST00000487284 CENPJQ9HC77 1338 aaPredicted RBP19.66■□□□□ 0.74
CUX1-209ENST00000487284 TESK2Q96S53 571 aa19.66■□□□□ 0.74
CUX1-209ENST00000487284 PRAM1Q96QH2 718 aa19.65■□□□□ 0.74
CUX1-209ENST00000487284 ROBO2Q9HCK4 1378 aa19.64■□□□□ 0.74
CUX1-209ENST00000487284 NWD1Q149M9 1564 aa19.64■□□□□ 0.73
CUX1-209ENST00000487284 PLEKHH1Q9ULM0 1364 aa19.64■□□□□ 0.73
CUX1-209ENST00000487284 SAFB2Q14151 953 aaKnown RBP eCLIP19.63■□□□□ 0.73
CUX1-209ENST00000487284 PTCH1Q13635 1447 aa19.63■□□□□ 0.73
CUX1-209ENST00000487284 KCNA6P17658 529 aa19.62■□□□□ 0.73
CUX1-209ENST00000487284 WAPLQ7Z5K2 1190 aa19.62■□□□□ 0.73
CUX1-209ENST00000487284 FAM135BQ49AJ0 1406 aa19.62■□□□□ 0.73
CUX1-209ENST00000487284 POGKQ9P215 609 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms