RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 CEP170Q5SW79 1584 aa16.94■□□□□ 0.3
HMGN1-216ENST00000486741 PZPP20742 1482 aa16.94■□□□□ 0.3
HMGN1-216ENST00000486741 SPRYD3Q8NCJ5 442 aa16.93■□□□□ 0.3
HMGN1-216ENST00000486741 DISP3Q9P2K9 1392 aa16.93■□□□□ 0.3
HMGN1-216ENST00000486741 NGDNQ8NEJ9 315 aaKnown RBP16.93■□□□□ 0.3
HMGN1-216ENST00000486741 LTV1Q96GA3 475 aaPredicted RBP16.93■□□□□ 0.3
HMGN1-216ENST00000486741 RTN4Q9NQC3 1192 aaKnown RBP16.93■□□□□ 0.3
HMGN1-216ENST00000486741 A0A0G2JS52 829 aa16.92■□□□□ 0.3
HMGN1-216ENST00000486741 FANCAO15360 1455 aa16.92■□□□□ 0.3
HMGN1-216ENST00000486741 KDM6BO15054 1643 aa16.91■□□□□ 0.3
HMGN1-216ENST00000486741 HMOX1P09601 288 aa16.91■□□□□ 0.3
HMGN1-216ENST00000486741 PDE4AP27815 886 aa16.91■□□□□ 0.3
HMGN1-216ENST00000486741 TCP11L2Q8N4U5 519 aa16.91■□□□□ 0.3
HMGN1-216ENST00000486741 EID1Q9Y6B2 187 aa16.91■□□□□ 0.3
HMGN1-216ENST00000486741 FBXO31Q5XUX0 539 aaPredicted RBP16.91■□□□□ 0.3
HMGN1-216ENST00000486741 SLC4A3P48751 1232 aa16.9■□□□□ 0.3
HMGN1-216ENST00000486741 PLCH2O75038 1416 aa16.9■□□□□ 0.3
HMGN1-216ENST00000486741 BECN1Q14457 450 aa16.9■□□□□ 0.3
HMGN1-216ENST00000486741 PANK1Q8TE04 598 aa16.9■□□□□ 0.3
HMGN1-216ENST00000486741 MS4A1P11836 297 aa16.89■□□□□ 0.29
HMGN1-216ENST00000486741 TXNDC2Q86VQ3 553 aa16.88■□□□□ 0.29
HMGN1-216ENST00000486741 BCAR3O75815 825 aa16.88■□□□□ 0.29
HMGN1-216ENST00000486741 IDI1Q13907 227 aa16.88■□□□□ 0.29
HMGN1-216ENST00000486741 RUNDC1Q96C34 613 aa16.88■□□□□ 0.29
HMGN1-216ENST00000486741 RIPK4P57078 832 aa16.87■□□□□ 0.29
HMGN1-216ENST00000486741 SKAP1Q86WV1 359 aa16.87■□□□□ 0.29
HMGN1-216ENST00000486741 DIAPH1O60610 1272 aaKnown RBP16.87■□□□□ 0.29
HMGN1-216ENST00000486741 RTF1Q92541 710 aaKnown RBP16.87■□□□□ 0.29
HMGN1-216ENST00000486741 IPO9Q96P70 1041 aaKnown RBP16.87■□□□□ 0.29
HMGN1-216ENST00000486741 CABP1Q9NZU7 370 aa16.87■□□□□ 0.29
HMGN1-216ENST00000486741 DNMT1P26358 1616 aaKnown RBP16.86■□□□□ 0.29
HMGN1-216ENST00000486741 COG3Q96JB2 828 aa16.86■□□□□ 0.29
HMGN1-216ENST00000486741 IPO8O15397 1037 aaKnown RBP16.85■□□□□ 0.29
HMGN1-216ENST00000486741 RWDD1Q9H446 243 aaPredicted RBP16.85■□□□□ 0.29
HMGN1-216ENST00000486741 ITSN2Q9NZM3 1697 aa16.85■□□□□ 0.29
HMGN1-216ENST00000486741 FAM135AQ9P2D6 1515 aa16.85■□□□□ 0.29
HMGN1-216ENST00000486741 HAP1P54257 671 aaPredicted RBP16.84■□□□□ 0.29
HMGN1-216ENST00000486741 AMPHP49418 695 aa16.84■□□□□ 0.29
HMGN1-216ENST00000486741 SMG6Q86US8 1419 aaKnown RBP16.83■□□□□ 0.29
HMGN1-216ENST00000486741 TESK2Q96S53 571 aa16.83■□□□□ 0.28
HMGN1-216ENST00000486741 WAPLQ7Z5K2 1190 aa16.83■□□□□ 0.28
HMGN1-216ENST00000486741 SLC52A1Q9NWF4 448 aa16.83■□□□□ 0.28
HMGN1-216ENST00000486741 ASXL2Q76L83 1435 aa16.83■□□□□ 0.28
HMGN1-216ENST00000486741 CDK19Q9BWU1 502 aa16.82■□□□□ 0.28
HMGN1-216ENST00000486741 SLKQ9H2G2 1235 aaPredicted RBP16.82■□□□□ 0.28
HMGN1-216ENST00000486741 DHX29Q7Z478 1369 aaKnown RBP16.82■□□□□ 0.28
HMGN1-216ENST00000486741 NUTM2GQ5VZR2 741 aa16.82■□□□□ 0.28
HMGN1-216ENST00000486741 CENPQQ7L2Z9 268 aaPredicted RBP16.82■□□□□ 0.28
HMGN1-216ENST00000486741 TSR2Q969E8 191 aaKnown RBP16.82■□□□□ 0.28
HMGN1-216ENST00000486741 C20orf194Q5TEA3 1177 aa16.81■□□□□ 0.28
HMGN1-216ENST00000486741 PRAG1Q86YV5 1406 aa16.81■□□□□ 0.28
HMGN1-216ENST00000486741 TEX14Q8IWB6 1497 aa16.8■□□□□ 0.28
HMGN1-216ENST00000486741 SLC26A8Q96RN1 970 aa16.8■□□□□ 0.28
HMGN1-216ENST00000486741 SLC4A10Q6U841 1118 aa16.8■□□□□ 0.28
HMGN1-216ENST00000486741 NOS1P29475 1434 aa16.8■□□□□ 0.28
HMGN1-216ENST00000486741 ZKSCAN2Q63HK3 967 aa16.79■□□□□ 0.28
HMGN1-216ENST00000486741 RALGAPBQ86X10 1494 aa16.79■□□□□ 0.28
HMGN1-216ENST00000486741 PMFBP1Q8TBY8 1022 aa16.79■□□□□ 0.28
HMGN1-216ENST00000486741 NSD3Q9BZ95 1437 aa16.78■□□□□ 0.28
HMGN1-216ENST00000486741 MFAP1P55081 439 aaKnown RBP16.78■□□□□ 0.28
HMGN1-216ENST00000486741 CALD1Q05682 793 aaKnown RBP16.77■□□□□ 0.27
HMGN1-216ENST00000486741 DEKP35659 375 aaKnown RBP16.76■□□□□ 0.27
HMGN1-216ENST00000486741 FBLN1P23142 703 aa16.76■□□□□ 0.27
HMGN1-216ENST00000486741 KDM5BQ9UGL1 1544 aa16.76■□□□□ 0.27
HMGN1-216ENST00000486741 PRKAR2BP31323 418 aa16.75■□□□□ 0.27
HMGN1-216ENST00000486741 TPRNQ4KMQ1 711 aa16.75■□□□□ 0.27
HMGN1-216ENST00000486741 FANCIQ9NVI1 1328 aa16.75■□□□□ 0.27
HMGN1-216ENST00000486741 EXOSC9Q06265 439 aaKnown RBP16.74■□□□□ 0.27
HMGN1-216ENST00000486741 NECTIN2Q92692 538 aa16.74■□□□□ 0.27
HMGN1-216ENST00000486741 DZIP1LQ8IYY4 767 aaKnown RBP16.74■□□□□ 0.27
HMGN1-216ENST00000486741 PER1O15534 1290 aaPredicted RBP16.73■□□□□ 0.27
HMGN1-216ENST00000486741 ADGRL2O95490 1459 aa16.73■□□□□ 0.27
HMGN1-216ENST00000486741 DUOX2Q9NRD8 1548 aa16.73■□□□□ 0.27
HMGN1-216ENST00000486741 CHMP4BQ9H444 224 aaKnown RBP16.73■□□□□ 0.27
HMGN1-216ENST00000486741 FAM161AQ3B820 660 aa16.73■□□□□ 0.27
HMGN1-216ENST00000486741 AMER1Q5JTC6 1135 aaPredicted RBP16.73■□□□□ 0.27
HMGN1-216ENST00000486741 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.73■□□□□ 0.27
HMGN1-216ENST00000486741 ABCC2Q92887 1545 aa16.73■□□□□ 0.27
HMGN1-216ENST00000486741 WDR7Q9Y4E6 1490 aa16.73■□□□□ 0.27
HMGN1-216ENST00000486741 RPGRIP1LQ68CZ1 1315 aa16.73■□□□□ 0.27
HMGN1-216ENST00000486741 WWC1Q8IX03 1113 aa16.72■□□□□ 0.27
HMGN1-216ENST00000486741 SCAF11Q99590 1463 aaKnown RBP16.72■□□□□ 0.27
HMGN1-216ENST00000486741 SHANK2Q9UPX8 1470 aa16.72■□□□□ 0.27
HMGN1-216ENST00000486741 CEBPAP49715 358 aaPredicted RBP16.72■□□□□ 0.27
HMGN1-216ENST00000486741 RRS1Q15050 365 aaKnown RBP16.72■□□□□ 0.27
HMGN1-216ENST00000486741 C14orf93Q9H972 538 aaKnown RBP16.72■□□□□ 0.27
HMGN1-216ENST00000486741 ABCC10Q5T3U5 1492 aa16.71■□□□□ 0.27
HMGN1-216ENST00000486741 MBD5Q9P267 1494 aa16.71■□□□□ 0.27
HMGN1-216ENST00000486741 GLIPR1L2Q4G1C9 344 aa16.71■□□□□ 0.27
HMGN1-216ENST00000486741 SLFN5Q08AF3 891 aa16.71■□□□□ 0.27
HMGN1-216ENST00000486741 OS9Q13438 667 aaPredicted RBP16.7■□□□□ 0.26
HMGN1-216ENST00000486741 HSP90AB1P08238 724 aaKnown RBP16.69■□□□□ 0.26
HMGN1-216ENST00000486741 A2MP01023 1474 aa16.69■□□□□ 0.26
HMGN1-216ENST00000486741 ANKRD45Q5TZF3 282 aa16.69■□□□□ 0.26
HMGN1-216ENST00000486741 NGEFQ8N5V2 710 aa16.69■□□□□ 0.26
HMGN1-216ENST00000486741 THUMPD2Q9BTF0 503 aaKnown RBP16.69■□□□□ 0.26
HMGN1-216ENST00000486741 LMOD3Q0VAK6 560 aa16.68■□□□□ 0.26
HMGN1-216ENST00000486741 STK31Q9BXU1 1019 aa16.68■□□□□ 0.26
HMGN1-216ENST00000486741 DENND4BO75064 1496 aaPredicted RBP16.68■□□□□ 0.26
HMGN1-216ENST00000486741 CSB-PGBD3P0DP91 1061 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms