RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 SENP3Q9H4L4 574 aaPredicted RBP20.21■□□□□ 0.83
HDAC6-227ENST00000485102 ZFYVE9O95405 1425 aa20.2■□□□□ 0.82
HDAC6-227ENST00000485102 FAM50AQ14320 339 aaKnown RBP20.19■□□□□ 0.82
HDAC6-227ENST00000485102 PLEKHG1Q9ULL1 1385 aa20.19■□□□□ 0.82
HDAC6-227ENST00000485102 TBX22Q9Y458 520 aa20.17■□□□□ 0.82
HDAC6-227ENST00000485102 NCOA3Q9Y6Q9 1424 aa20.16■□□□□ 0.82
HDAC6-227ENST00000485102 MSH6P52701 1360 aa20.15■□□□□ 0.82
HDAC6-227ENST00000485102 TMEM131LA2VDJ0 1609 aa20.15■□□□□ 0.82
HDAC6-227ENST00000485102 ROBO1Q9Y6N7 1651 aa20.15■□□□□ 0.82
HDAC6-227ENST00000485102 CHD2O14647 1828 aaKnown RBP20.15■□□□□ 0.82
HDAC6-227ENST00000485102 RIMS2Q9UQ26 1411 aa20.14■□□□□ 0.81
HDAC6-227ENST00000485102 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.14■□□□□ 0.81
HDAC6-227ENST00000485102 SLAIN2Q9P270 581 aa20.14■□□□□ 0.81
HDAC6-227ENST00000485102 ROCK1Q13464 1354 aa20.13■□□□□ 0.81
HDAC6-227ENST00000485102 RBM33Q96EV2 1170 aaKnown RBP20.13■□□□□ 0.81
HDAC6-227ENST00000485102 BCANQ96GW7 911 aa20.13■□□□□ 0.81
HDAC6-227ENST00000485102 GCC2Q8IWJ2 1684 aa20.13■□□□□ 0.81
HDAC6-227ENST00000485102 UNC13BO14795 1591 aa20.12■□□□□ 0.81
HDAC6-227ENST00000485102 MYO5BQ9ULV0 1848 aa20.12■□□□□ 0.81
HDAC6-227ENST00000485102 PPP1R15AO75807 674 aaPredicted RBP20.1■□□□□ 0.81
HDAC6-227ENST00000485102 PIK3R4Q99570 1358 aa20.09■□□□□ 0.81
HDAC6-227ENST00000485102 POTEAQ6S8J7 498 aa20.07■□□□□ 0.8
HDAC6-227ENST00000485102 ADAMTS13Q76LX8 1427 aa20.07■□□□□ 0.8
HDAC6-227ENST00000485102 E9PCH4 1651 aa20.06■□□□□ 0.8
HDAC6-227ENST00000485102 JCADQ9P266 1359 aa20.06■□□□□ 0.8
HDAC6-227ENST00000485102 DIP2AQ14689 1571 aa20.05■□□□□ 0.8
HDAC6-227ENST00000485102 IQGAP3Q86VI3 1631 aa20.05■□□□□ 0.8
HDAC6-227ENST00000485102 C19orf44Q9H6X5 657 aa20.04■□□□□ 0.8
HDAC6-227ENST00000485102 CADPS2Q86UW7 1296 aa20.03■□□□□ 0.8
HDAC6-227ENST00000485102 PHLPP1O60346 1717 aa20.02■□□□□ 0.8
HDAC6-227ENST00000485102 CHGAP10645 457 aaKnown RBP20.02■□□□□ 0.8
HDAC6-227ENST00000485102 NUP155O75694 1391 aa20.01■□□□□ 0.79
HDAC6-227ENST00000485102 COL16A1Q07092 1604 aaPredicted RBP19.99■□□□□ 0.79
HDAC6-227ENST00000485102 SPATA31A6Q5VVP1 1343 aa19.99■□□□□ 0.79
HDAC6-227ENST00000485102 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.97■□□□□ 0.79
HDAC6-227ENST00000485102 ATF3P18847 181 aa19.97■□□□□ 0.79
HDAC6-227ENST00000485102 NUTM2DQ5VT03 806 aaPredicted RBP19.97■□□□□ 0.79
HDAC6-227ENST00000485102 AMOTL2Q9Y2J4 779 aa19.97■□□□□ 0.79
HDAC6-227ENST00000485102 TRPM2O94759 1503 aa19.97■□□□□ 0.79
HDAC6-227ENST00000485102 C14orf37Q86TY3 774 aa19.96■□□□□ 0.79
HDAC6-227ENST00000485102 AHDC1Q5TGY3 1603 aaPredicted RBP19.95■□□□□ 0.78
HDAC6-227ENST00000485102 DCCP43146 1447 aa19.94■□□□□ 0.78
HDAC6-227ENST00000485102 PTPRUQ92729 1446 aa19.94■□□□□ 0.78
HDAC6-227ENST00000485102 SETBP1Q9Y6X0 1596 aa19.91■□□□□ 0.78
HDAC6-227ENST00000485102 BRINP3Q76B58 766 aa19.9■□□□□ 0.78
HDAC6-227ENST00000485102 NRXN3Q9Y4C0 1643 aa19.9■□□□□ 0.78
HDAC6-227ENST00000485102 LRP6O75581 1613 aa19.89■□□□□ 0.77
HDAC6-227ENST00000485102 SHPRHQ149N8 1683 aa19.89■□□□□ 0.77
HDAC6-227ENST00000485102 ZNF772Q68DY9 489 aaPredicted RBP19.89■□□□□ 0.77
HDAC6-227ENST00000485102 XRN1Q8IZH2 1706 aaKnown RBP19.88■□□□□ 0.77
HDAC6-227ENST00000485102 SPHKAPQ2M3C7 1700 aa19.88■□□□□ 0.77
HDAC6-227ENST00000485102 ITGAEP38570 1179 aa19.87■□□□□ 0.77
HDAC6-227ENST00000485102 SETD5Q9C0A6 1442 aa19.85■□□□□ 0.77
HDAC6-227ENST00000485102 METP08581 1390 aa19.84■□□□□ 0.77
HDAC6-227ENST00000485102 MST1RQ04912 1400 aa19.84■□□□□ 0.77
HDAC6-227ENST00000485102 ZNF326Q5BKZ1 582 aaKnown RBP19.83■□□□□ 0.77
HDAC6-227ENST00000485102 MEX3CQ5U5Q3 659 aaKnown RBP19.83■□□□□ 0.77
HDAC6-227ENST00000485102 ASXL1Q8IXJ9 1541 aa19.81■□□□□ 0.76
HDAC6-227ENST00000485102 LRRC59Q96AG4 307 aaKnown RBP19.81■□□□□ 0.76
HDAC6-227ENST00000485102 NEXMIFQ5QGS0 1516 aa19.81■□□□□ 0.76
HDAC6-227ENST00000485102 ADGRL3Q9HAR2 1447 aa19.8■□□□□ 0.76
HDAC6-227ENST00000485102 SETD1AO15047 1707 aaKnown RBP19.79■□□□□ 0.76
HDAC6-227ENST00000485102 RRBP1Q9P2E9 1410 aaKnown RBP19.79■□□□□ 0.76
HDAC6-227ENST00000485102 NHSL1Q5SYE7 1610 aa19.79■□□□□ 0.76
HDAC6-227ENST00000485102 CLTCL1P53675 1640 aa19.78■□□□□ 0.76
HDAC6-227ENST00000485102 CDK12Q9NYV4 1490 aaPredicted RBP19.78■□□□□ 0.76
HDAC6-227ENST00000485102 NAIPQ13075 1403 aa19.77■□□□□ 0.76
HDAC6-227ENST00000485102 RXRBP28702 533 aa19.77■□□□□ 0.76
HDAC6-227ENST00000485102 VGFO15240 615 aaPredicted RBP19.76■□□□□ 0.75
HDAC6-227ENST00000485102 UPF1Q92900 1129 aaKnown RBP eCLIP19.76■□□□□ 0.75
HDAC6-227ENST00000485102 PRAG1Q86YV5 1406 aa19.76■□□□□ 0.75
HDAC6-227ENST00000485102 KIF1BO60333 1816 aa19.75■□□□□ 0.75
HDAC6-227ENST00000485102 PPARGC1BQ86YN6 1023 aaKnown RBP19.74■□□□□ 0.75
HDAC6-227ENST00000485102 PTCH1Q13635 1447 aa19.74■□□□□ 0.75
HDAC6-227ENST00000485102 RPGRIP1LQ68CZ1 1315 aa19.74■□□□□ 0.75
HDAC6-227ENST00000485102 NUTM2BA6NNL0 878 aaPredicted RBP19.73■□□□□ 0.75
HDAC6-227ENST00000485102 NUTM2EB1AL46 878 aaPredicted RBP19.73■□□□□ 0.75
HDAC6-227ENST00000485102 NUTM2AQ8IVF1 878 aaPredicted RBP19.73■□□□□ 0.75
HDAC6-227ENST00000485102 TRIM52Q96A61 297 aa19.72■□□□□ 0.75
HDAC6-227ENST00000485102 LAMC1P11047 1609 aa19.72■□□□□ 0.75
HDAC6-227ENST00000485102 AFF2P51816 1311 aa19.72■□□□□ 0.75
HDAC6-227ENST00000485102 PNPLA6Q8IY17 1366 aa19.71■□□□□ 0.75
HDAC6-227ENST00000485102 NALCNQ8IZF0 1738 aa19.71■□□□□ 0.75
HDAC6-227ENST00000485102 C1orf167Q5SNV9 1468 aa19.71■□□□□ 0.75
HDAC6-227ENST00000485102 HFM1A2PYH4 1435 aa19.69■□□□□ 0.74
HDAC6-227ENST00000485102 SOS2Q07890 1332 aaPredicted RBP19.69■□□□□ 0.74
HDAC6-227ENST00000485102 DDX17Q92841 729 aaKnown RBP19.68■□□□□ 0.74
HDAC6-227ENST00000485102 ROBO2Q9HCK4 1378 aa19.68■□□□□ 0.74
HDAC6-227ENST00000485102 RBM6P78332 1123 aaKnown RBP19.67■□□□□ 0.74
HDAC6-227ENST00000485102 QTRT2Q9H974 415 aaKnown RBP19.66■□□□□ 0.74
HDAC6-227ENST00000485102 C8orf37Q96NL8 207 aa19.64■□□□□ 0.73
HDAC6-227ENST00000485102 SLC4A1APQ9BWU0 796 aaKnown RBP19.64■□□□□ 0.73
HDAC6-227ENST00000485102 ORAI2Q96SN7 254 aa19.63■□□□□ 0.73
HDAC6-227ENST00000485102 NGLY1Q96IV0 654 aa19.61■□□□□ 0.73
HDAC6-227ENST00000485102 PPLO60437 1756 aa19.61■□□□□ 0.73
HDAC6-227ENST00000485102 FNBP4Q8N3X1 1017 aaPredicted RBP19.6■□□□□ 0.73
HDAC6-227ENST00000485102 RGS12O14924 1447 aa19.59■□□□□ 0.73
HDAC6-227ENST00000485102 ADAMTS2O95450 1211 aa19.57■□□□□ 0.72
HDAC6-227ENST00000485102 NPHP3Q7Z494 1330 aa19.56■□□□□ 0.72
HDAC6-227ENST00000485102 COL22A1Q8NFW1 1626 aaPredicted RBP19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms