RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 RIMS2Q9UQ26 1411 aa23.58■■□□□ 1.36
UPF3A-208ENST00000484246 LTBP4Q8N2S1 1624 aa23.56■■□□□ 1.36
UPF3A-208ENST00000484246 HDGFP51858 240 aaKnown RBP23.53■■□□□ 1.36
UPF3A-208ENST00000484246 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.53■■□□□ 1.36
UPF3A-208ENST00000484246 PLEKHG1Q9ULL1 1385 aa23.52■■□□□ 1.36
UPF3A-208ENST00000484246 CCDC144AA2RUR9 1427 aa23.52■■□□□ 1.36
UPF3A-208ENST00000484246 TRIM26Q12899 539 aaPredicted RBP23.52■■□□□ 1.36
UPF3A-208ENST00000484246 CHGAP10645 457 aaKnown RBP23.51■■□□□ 1.35
UPF3A-208ENST00000484246 ZNF335Q9H4Z2 1342 aaPredicted RBP23.49■■□□□ 1.35
UPF3A-208ENST00000484246 MYO5BQ9ULV0 1848 aa23.49■■□□□ 1.35
UPF3A-208ENST00000484246 SPATA31E1Q6ZUB1 1445 aa23.48■■□□□ 1.35
UPF3A-208ENST00000484246 IQSEC2Q5JU85 1478 aa23.48■■□□□ 1.35
UPF3A-208ENST00000484246 ANKRD30BQ9BXX2 1392 aa23.47■■□□□ 1.35
UPF3A-208ENST00000484246 NEXMIFQ5QGS0 1516 aa23.47■■□□□ 1.35
UPF3A-208ENST00000484246 CPS1P31327 1500 aa23.46■■□□□ 1.35
UPF3A-208ENST00000484246 CERKQ8TCT0 537 aa23.45■■□□□ 1.34
UPF3A-208ENST00000484246 RPGRIP1LQ68CZ1 1315 aa23.44■■□□□ 1.34
UPF3A-208ENST00000484246 PPP1R15AO75807 674 aaPredicted RBP23.44■■□□□ 1.34
UPF3A-208ENST00000484246 KIF1BO60333 1816 aa23.43■■□□□ 1.34
UPF3A-208ENST00000484246 DIP2AQ14689 1571 aa23.43■■□□□ 1.34
UPF3A-208ENST00000484246 ADAMTS13Q76LX8 1427 aa23.42■■□□□ 1.34
UPF3A-208ENST00000484246 SETBP1Q9Y6X0 1596 aa23.42■■□□□ 1.34
UPF3A-208ENST00000484246 ZNF326Q5BKZ1 582 aaKnown RBP23.4■■□□□ 1.34
UPF3A-208ENST00000484246 TBX22Q9Y458 520 aa23.39■■□□□ 1.33
UPF3A-208ENST00000484246 NWD1Q149M9 1564 aa23.39■■□□□ 1.33
UPF3A-208ENST00000484246 PIK3R4Q99570 1358 aa23.38■■□□□ 1.33
UPF3A-208ENST00000484246 PIAS4Q8N2W9 510 aaPredicted RBP23.36■■□□□ 1.33
UPF3A-208ENST00000484246 SLC26A8Q96RN1 970 aa23.36■■□□□ 1.33
UPF3A-208ENST00000484246 NRXN3Q9Y4C0 1643 aa23.36■■□□□ 1.33
UPF3A-208ENST00000484246 NKTRP30414 1462 aaKnown RBP23.35■■□□□ 1.33
UPF3A-208ENST00000484246 VGFO15240 615 aaPredicted RBP23.34■■□□□ 1.33
UPF3A-208ENST00000484246 KCNA6P17658 529 aa23.33■■□□□ 1.33
UPF3A-208ENST00000484246 NUTM2DQ5VT03 806 aaPredicted RBP23.33■■□□□ 1.33
UPF3A-208ENST00000484246 LRRC7Q96NW7 1537 aa23.32■■□□□ 1.32
UPF3A-208ENST00000484246 STRCP1A6NGW2 1772 aa23.32■■□□□ 1.32
UPF3A-208ENST00000484246 PPLO60437 1756 aa23.32■■□□□ 1.32
UPF3A-208ENST00000484246 ILDR2Q71H61 639 aa23.3■■□□□ 1.32
UPF3A-208ENST00000484246 BCANQ96GW7 911 aa23.3■■□□□ 1.32
UPF3A-208ENST00000484246 MYOM2P54296 1465 aa23.3■■□□□ 1.32
UPF3A-208ENST00000484246 DISP3Q9P2K9 1392 aa23.29■■□□□ 1.32
UPF3A-208ENST00000484246 IFT172Q9UG01 1749 aa23.29■■□□□ 1.32
UPF3A-208ENST00000484246 NRXN1Q9ULB1 1477 aa23.27■■□□□ 1.32
UPF3A-208ENST00000484246 DHX57Q6P158 1386 aaKnown RBP23.27■■□□□ 1.31
UPF3A-208ENST00000484246 RGL3Q3MIN7 710 aa23.26■■□□□ 1.31
UPF3A-208ENST00000484246 PIK3C2GO75747 1445 aa23.25■■□□□ 1.31
UPF3A-208ENST00000484246 PRAG1Q86YV5 1406 aa23.25■■□□□ 1.31
UPF3A-208ENST00000484246 ADGRF5Q8IZF2 1346 aa23.23■■□□□ 1.31
UPF3A-208ENST00000484246 METP08581 1390 aa23.23■■□□□ 1.31
UPF3A-208ENST00000484246 PTPRUQ92729 1446 aa23.23■■□□□ 1.31
UPF3A-208ENST00000484246 ALKQ9UM73 1620 aa23.22■■□□□ 1.31
UPF3A-208ENST00000484246 SETD1AO15047 1707 aaKnown RBP23.22■■□□□ 1.31
UPF3A-208ENST00000484246 XRN1Q8IZH2 1706 aaKnown RBP23.22■■□□□ 1.31
UPF3A-208ENST00000484246 CHD2O14647 1828 aaKnown RBP23.22■■□□□ 1.31
UPF3A-208ENST00000484246 STAC3Q96MF2 364 aa23.22■■□□□ 1.31
UPF3A-208ENST00000484246 NCOA3Q9Y6Q9 1424 aa23.22■■□□□ 1.31
UPF3A-208ENST00000484246 TMEM94Q12767 1356 aa23.2■■□□□ 1.3
UPF3A-208ENST00000484246 PTCH1Q13635 1447 aa23.16■■□□□ 1.3
UPF3A-208ENST00000484246 AMOTL2Q9Y2J4 779 aa23.16■■□□□ 1.3
UPF3A-208ENST00000484246 PROSER2Q86WR7 435 aaPredicted RBP23.15■■□□□ 1.3
UPF3A-208ENST00000484246 ASXL1Q8IXJ9 1541 aa23.13■■□□□ 1.29
UPF3A-208ENST00000484246 LAMC1P11047 1609 aa23.13■■□□□ 1.29
UPF3A-208ENST00000484246 SOCS7O14512 581 aa23.13■■□□□ 1.29
UPF3A-208ENST00000484246 TECPR2O15040 1411 aa23.13■■□□□ 1.29
UPF3A-208ENST00000484246 C14orf93Q9H972 538 aaKnown RBP23.12■■□□□ 1.29
UPF3A-208ENST00000484246 XIRP1Q702N8 1843 aaKnown RBP23.12■■□□□ 1.29
UPF3A-208ENST00000484246 UBAP1LF5GYI3 381 aa23.11■■□□□ 1.29
UPF3A-208ENST00000484246 TOM1O60784 492 aa23.1■■□□□ 1.29
UPF3A-208ENST00000484246 LRPPRCP42704 1394 aaKnown RBP23.09■■□□□ 1.29
UPF3A-208ENST00000484246 DCAF11Q8TEB1 546 aa23.08■■□□□ 1.29
UPF3A-208ENST00000484246 MSH6P52701 1360 aa23.08■■□□□ 1.29
UPF3A-208ENST00000484246 ABCC11Q96J66 1382 aa23.07■■□□□ 1.28
UPF3A-208ENST00000484246 PCGF6Q9BYE7 350 aa23.07■■□□□ 1.28
UPF3A-208ENST00000484246 DCCP43146 1447 aa23.07■■□□□ 1.28
UPF3A-208ENST00000484246 ROBO2Q9HCK4 1378 aa23.05■■□□□ 1.28
UPF3A-208ENST00000484246 ADGRB1O14514 1584 aa23.05■■□□□ 1.28
UPF3A-208ENST00000484246 YTHDC2Q9H6S0 1430 aaKnown RBP23.04■■□□□ 1.28
UPF3A-208ENST00000484246 ADGRL3Q9HAR2 1447 aa23.04■■□□□ 1.28
UPF3A-208ENST00000484246 KNDC1Q76NI1 1749 aa23.03■■□□□ 1.28
UPF3A-208ENST00000484246 CFAP70Q5T0N1 1121 aa23.03■■□□□ 1.28
UPF3A-208ENST00000484246 RBM33Q96EV2 1170 aaKnown RBP23.03■■□□□ 1.28
UPF3A-208ENST00000484246 SIN3AQ96ST3 1273 aa23.03■■□□□ 1.28
UPF3A-208ENST00000484246 C19orf44Q9H6X5 657 aa23.02■■□□□ 1.28
UPF3A-208ENST00000484246 FAM135BQ49AJ0 1406 aa23.01■■□□□ 1.27
UPF3A-208ENST00000484246 SIRT1Q96EB6 747 aa23■■□□□ 1.27
UPF3A-208ENST00000484246 KDM2AQ9Y2K7 1162 aa23■■□□□ 1.27
UPF3A-208ENST00000484246 DLC1Q96QB1 1528 aa22.99■■□□□ 1.27
UPF3A-208ENST00000484246 L3MBTL2Q969R5 705 aa22.99■■□□□ 1.27
UPF3A-208ENST00000484246 TMEM132EQ6IEE7 984 aa22.98■■□□□ 1.27
UPF3A-208ENST00000484246 CADPS2Q86UW7 1296 aa22.98■■□□□ 1.27
UPF3A-208ENST00000484246 CLSPNQ9HAW4 1339 aa22.98■■□□□ 1.27
UPF3A-208ENST00000484246 KIAA1210Q9ULL0 1709 aa22.96■■□□□ 1.27
UPF3A-208ENST00000484246 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.96■■□□□ 1.27
UPF3A-208ENST00000484246 C14orf37Q86TY3 774 aa22.95■■□□□ 1.26
UPF3A-208ENST00000484246 NALCNQ8IZF0 1738 aa22.94■■□□□ 1.26
UPF3A-208ENST00000484246 NEUROD1Q13562 356 aa22.94■■□□□ 1.26
UPF3A-208ENST00000484246 ATF3P18847 181 aa22.92■■□□□ 1.26
UPF3A-208ENST00000484246 PIP4K2BP78356 416 aa22.92■■□□□ 1.26
UPF3A-208ENST00000484246 CDC42BPGQ6DT37 1551 aa22.92■■□□□ 1.26
UPF3A-208ENST00000484246 SLAIN2Q9P270 581 aa22.91■■□□□ 1.26
UPF3A-208ENST00000484246 STK26Q9P289 416 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms