RNA–Protein interactions for RNA: ENST00000481131.5

UPF3A-207, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 678 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-207ENST00000481131 RABGEF1Q9UJ41 708 aa10.59□□□□□ -0.71
UPF3A-207ENST00000481131 TRIM6-TRIM34B2RNG4 842 aa10.58□□□□□ -0.72
UPF3A-207ENST00000481131 EYA1Q99502 592 aa10.58□□□□□ -0.72
UPF3A-207ENST00000481131 GOPCQ9HD26 462 aa10.58□□□□□ -0.72
UPF3A-207ENST00000481131 PLA2G2EQ9NZK7 142 aa10.58□□□□□ -0.72
UPF3A-207ENST00000481131 RBM46Q8TBY0 533 aaKnown RBP10.57□□□□□ -0.72
UPF3A-207ENST00000481131 SEPT9Q9UHD8 586 aaPredicted RBP10.57□□□□□ -0.72
UPF3A-207ENST00000481131 MRPL50Q8N5N7 158 aaKnown RBP10.56□□□□□ -0.72
UPF3A-207ENST00000481131 BEGAINQ9BUH8 593 aa10.56□□□□□ -0.72
UPF3A-207ENST00000481131 STAC3Q96MF2 364 aa10.55□□□□□ -0.72
UPF3A-207ENST00000481131 RCCD1A6NED2 376 aa10.54□□□□□ -0.72
UPF3A-207ENST00000481131 SH3D19Q5HYK7 790 aa10.54□□□□□ -0.72
UPF3A-207ENST00000481131 NUDT18Q6ZVK8 323 aa10.54□□□□□ -0.72
UPF3A-207ENST00000481131 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.53□□□□□ -0.72
UPF3A-207ENST00000481131 SMAPO00193 183 aa10.53□□□□□ -0.72
UPF3A-207ENST00000481131 NBPF3Q9H094 633 aa10.52□□□□□ -0.73
UPF3A-207ENST00000481131 ONECUT3O60422 494 aaPredicted RBP10.51□□□□□ -0.73
UPF3A-207ENST00000481131 PTPN5P54829 565 aa10.51□□□□□ -0.73
UPF3A-207ENST00000481131 THSD4Q6ZMP0 1018 aa10.51□□□□□ -0.73
UPF3A-207ENST00000481131 TATDN2Q93075 761 aa10.51□□□□□ -0.73
UPF3A-207ENST00000481131 WNT2BQ93097 391 aa10.51□□□□□ -0.73
UPF3A-207ENST00000481131 NBPF26B4DH59 902 aa10.5□□□□□ -0.73
UPF3A-207ENST00000481131 PNMA3Q9UL41 463 aa10.5□□□□□ -0.73
UPF3A-207ENST00000481131 BCAMP50895 628 aa10.49□□□□□ -0.73
UPF3A-207ENST00000481131 PCMTD1Q96MG8 357 aaPredicted RBP10.49□□□□□ -0.73
UPF3A-207ENST00000481131 GOLGA8CPA6NN73 597 aa10.48□□□□□ -0.73
UPF3A-207ENST00000481131 PACS2Q86VP3 889 aa10.48□□□□□ -0.73
UPF3A-207ENST00000481131 ZFRQ96KR1 1074 aaKnown RBP10.48□□□□□ -0.73
UPF3A-207ENST00000481131 DNAJB2P25686 324 aa10.47□□□□□ -0.73
UPF3A-207ENST00000481131 SKIV2LQ15477 1246 aaKnown RBP10.47□□□□□ -0.73
UPF3A-207ENST00000481131 RSPH6AQ9H0K4 717 aa10.47□□□□□ -0.73
UPF3A-207ENST00000481131 TMEM134Q9H6X4 195 aa10.47□□□□□ -0.73
UPF3A-207ENST00000481131 MYSM1Q5VVJ2 828 aa10.46□□□□□ -0.73
UPF3A-207ENST00000481131 PROCA1Q8NCQ7 364 aaPredicted RBP10.46□□□□□ -0.73
UPF3A-207ENST00000481131 CD46P15529 392 aa10.45□□□□□ -0.74
UPF3A-207ENST00000481131 LAPTM4BQ86VI4 370 aa10.45□□□□□ -0.74
UPF3A-207ENST00000481131 TBC1D2Q9BYX2 928 aa10.45□□□□□ -0.74
UPF3A-207ENST00000481131 POLR3EQ9NVU0 708 aa10.45□□□□□ -0.74
UPF3A-207ENST00000481131 FAM98CQ17RN3 349 aaKnown RBP10.44□□□□□ -0.74
UPF3A-207ENST00000481131 IFFO2Q5TF58 517 aa10.44□□□□□ -0.74
UPF3A-207ENST00000481131 SOWAHBA6NEL2 793 aa10.42□□□□□ -0.74
UPF3A-207ENST00000481131 ANKK1Q8NFD2 765 aa10.42□□□□□ -0.74
UPF3A-207ENST00000481131 DDX11L8A8MPP1 907 aa10.41□□□□□ -0.74
UPF3A-207ENST00000481131 SPIRE2Q8WWL2 714 aa10.41□□□□□ -0.74
UPF3A-207ENST00000481131 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.41□□□□□ -0.74
UPF3A-207ENST00000481131 SUPT5HO00267 1087 aaKnown RBP10.4□□□□□ -0.74
UPF3A-207ENST00000481131 CLK2P49760 499 aaKnown RBP10.4□□□□□ -0.74
UPF3A-207ENST00000481131 FBXO31Q5XUX0 539 aaPredicted RBP10.4□□□□□ -0.74
UPF3A-207ENST00000481131 SULF1Q8IWU6 871 aa10.4□□□□□ -0.74
UPF3A-207ENST00000481131 SAMD7Q7Z3H4 446 aa10.39□□□□□ -0.75
UPF3A-207ENST00000481131 ZMYND15Q9H091 742 aa10.39□□□□□ -0.75
UPF3A-207ENST00000481131 WBP1LQ9NX94 342 aa10.39□□□□□ -0.75
UPF3A-207ENST00000481131 LIMD1Q9UGP4 676 aa10.39□□□□□ -0.75
UPF3A-207ENST00000481131 FLIIQ13045 1269 aa10.37□□□□□ -0.75
UPF3A-207ENST00000481131 DIXDC1Q155Q3 683 aa10.36□□□□□ -0.75
UPF3A-207ENST00000481131 SWT1Q5T5J6 900 aaKnown RBP10.35□□□□□ -0.75
UPF3A-207ENST00000481131 RIC3Q7Z5B4 369 aa10.35□□□□□ -0.75
UPF3A-207ENST00000481131 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.35□□□□□ -0.75
UPF3A-207ENST00000481131 HPS5Q9UPZ3 1129 aa10.35□□□□□ -0.75
UPF3A-207ENST00000481131 MOXD2PA6NHM9 499 aa10.34□□□□□ -0.75
UPF3A-207ENST00000481131 SPTLC1O15269 473 aa10.34□□□□□ -0.75
UPF3A-207ENST00000481131 SLC10A3P09131 477 aa10.34□□□□□ -0.75
UPF3A-207ENST00000481131 MCM6Q14566 821 aa10.34□□□□□ -0.75
UPF3A-207ENST00000481131 RSBN1LQ6PCB5 846 aaPredicted RBP10.34□□□□□ -0.75
UPF3A-207ENST00000481131 RDH13Q8NBN7 331 aa10.34□□□□□ -0.75
UPF3A-207ENST00000481131 LRCH3Q96II8 777 aa10.34□□□□□ -0.75
UPF3A-207ENST00000481131 NUTM1Q86Y26 1132 aa10.33□□□□□ -0.76
UPF3A-207ENST00000481131 ATP1B4Q9UN42 357 aaPredicted RBP10.33□□□□□ -0.76
UPF3A-207ENST00000481131 NDUFV2P19404 249 aa10.32□□□□□ -0.76
UPF3A-207ENST00000481131 RFC5P40937 340 aa10.31□□□□□ -0.76
UPF3A-207ENST00000481131 GCGRP47871 477 aa10.31□□□□□ -0.76
UPF3A-207ENST00000481131 TUSC1Q2TAM9 212 aa10.31□□□□□ -0.76
UPF3A-207ENST00000481131 TSR3Q9UJK0 312 aaKnown RBP10.31□□□□□ -0.76
UPF3A-207ENST00000481131 KDM4AO75164 1064 aa10.3□□□□□ -0.76
UPF3A-207ENST00000481131 ITGBL1O95965 494 aaPredicted RBP10.3□□□□□ -0.76
UPF3A-207ENST00000481131 PPP2R2DQ66LE6 453 aa10.3□□□□□ -0.76
UPF3A-207ENST00000481131 A0A0G2JS52 829 aa10.29□□□□□ -0.76
UPF3A-207ENST00000481131 RGS20O76081 388 aa10.29□□□□□ -0.76
UPF3A-207ENST00000481131 PCDHB15Q9Y5E8 787 aa10.29□□□□□ -0.76
UPF3A-207ENST00000481131 GJA5P36382 358 aa10.28□□□□□ -0.76
UPF3A-207ENST00000481131 QPCTQ16769 361 aa10.28□□□□□ -0.76
UPF3A-207ENST00000481131 CSPP1Q1MSJ5 1256 aa10.28□□□□□ -0.76
UPF3A-207ENST00000481131 CLUAP1Q96AJ1 413 aa10.28□□□□□ -0.76
UPF3A-207ENST00000481131 HOXA2O43364 376 aa10.27□□□□□ -0.77
UPF3A-207ENST00000481131 RNF40O75150 1001 aa10.27□□□□□ -0.77
UPF3A-207ENST00000481131 HLA-CQ95604 372 aa10.27□□□□□ -0.77
UPF3A-207ENST00000481131 LILRB3O75022 631 aa10.26□□□□□ -0.77
UPF3A-207ENST00000481131 PPP4CP60510 307 aa10.25□□□□□ -0.77
UPF3A-207ENST00000481131 NYAP1Q6ZVC0 841 aa10.25□□□□□ -0.77
UPF3A-207ENST00000481131 SNRKQ9NRH2 765 aa10.25□□□□□ -0.77
UPF3A-207ENST00000481131 UBTFP17480 764 aaKnown RBP10.24□□□□□ -0.77
UPF3A-207ENST00000481131 APLP1P51693 650 aa10.24□□□□□ -0.77
UPF3A-207ENST00000481131 USP46P62068 366 aa10.24□□□□□ -0.77
UPF3A-207ENST00000481131 GUCA2AQ02747 115 aa10.24□□□□□ -0.77
UPF3A-207ENST00000481131 RTL5Q5HYW3 569 aaPredicted RBP10.24□□□□□ -0.77
UPF3A-207ENST00000481131 RSPH4AQ5TD94 716 aa10.24□□□□□ -0.77
UPF3A-207ENST00000481131 BANK1Q8NDB2 785 aa10.24□□□□□ -0.77
UPF3A-207ENST00000481131 CABLES1Q8TDN4 633 aa10.24□□□□□ -0.77
UPF3A-207ENST00000481131 PCDHGC3Q9UN70 934 aa10.24□□□□□ -0.77
UPF3A-207ENST00000481131 A6NJR5 290 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms