RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 SCRIBQ14160 1630 aa10.12□□□□□ -0.79
UPF3A-205ENST00000479712 RBM46Q8TBY0 533 aaKnown RBP10.12□□□□□ -0.79
UPF3A-205ENST00000479712 RSPH6AQ9H0K4 717 aa10.11□□□□□ -0.79
UPF3A-205ENST00000479712 COL9A1P20849 921 aa10.1□□□□□ -0.79
UPF3A-205ENST00000479712 FLIIQ13045 1269 aa10.1□□□□□ -0.79
UPF3A-205ENST00000479712 ZNF687Q8N1G0 1237 aa10.1□□□□□ -0.79
UPF3A-205ENST00000479712 BCL2L12Q9HB09 334 aa10.1□□□□□ -0.79
UPF3A-205ENST00000479712 MYT1LQ9UL68 1186 aa10.1□□□□□ -0.79
UPF3A-205ENST00000479712 PPP1R3GB7ZBB8 358 aa10.08□□□□□ -0.8
UPF3A-205ENST00000479712 PTPREP23469 700 aa10.08□□□□□ -0.8
UPF3A-205ENST00000479712 SKIV2LQ15477 1246 aaKnown RBP10.08□□□□□ -0.8
UPF3A-205ENST00000479712 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.07□□□□□ -0.8
UPF3A-205ENST00000479712 FAM198AQ9UFP1 575 aa10.07□□□□□ -0.8
UPF3A-205ENST00000479712 ATP1B4Q9UN42 357 aaPredicted RBP10.07□□□□□ -0.8
UPF3A-205ENST00000479712 SOCS7O14512 581 aa10.06□□□□□ -0.8
UPF3A-205ENST00000479712 TSKSQ9UJT2 592 aa10.05□□□□□ -0.8
UPF3A-205ENST00000479712 RCCD1A6NED2 376 aa10.04□□□□□ -0.8
UPF3A-205ENST00000479712 ONECUT3O60422 494 aaPredicted RBP10.04□□□□□ -0.8
UPF3A-205ENST00000479712 ILDR2Q71H61 639 aa10.04□□□□□ -0.8
UPF3A-205ENST00000479712 EYA1Q99502 592 aa10.04□□□□□ -0.8
UPF3A-205ENST00000479712 POLR3EQ9NVU0 708 aa10.04□□□□□ -0.8
UPF3A-205ENST00000479712 NBPF26B4DH59 902 aa10.03□□□□□ -0.8
UPF3A-205ENST00000479712 MYSM1Q5VVJ2 828 aa10.03□□□□□ -0.8
UPF3A-205ENST00000479712 NUDT18Q6ZVK8 323 aa10.03□□□□□ -0.8
UPF3A-205ENST00000479712 HOMEZQ8IX15 550 aa10.03□□□□□ -0.8
UPF3A-205ENST00000479712 TRIM6-TRIM34B2RNG4 842 aa10.02□□□□□ -0.81
UPF3A-205ENST00000479712 PROCA1Q8NCQ7 364 aaPredicted RBP10.02□□□□□ -0.81
UPF3A-205ENST00000479712 TBC1D2Q9BYX2 928 aa10.02□□□□□ -0.81
UPF3A-205ENST00000479712 KIF21AQ7Z4S6 1674 aa10.02□□□□□ -0.81
UPF3A-205ENST00000479712 DIXDC1Q155Q3 683 aa10.01□□□□□ -0.81
UPF3A-205ENST00000479712 PNMA3Q9UL41 463 aa10.01□□□□□ -0.81
UPF3A-205ENST00000479712 MYO15BQ96JP2 1530 aa10.01□□□□□ -0.81
UPF3A-205ENST00000479712 DNAJB2P25686 324 aa10□□□□□ -0.81
UPF3A-205ENST00000479712 CLK2P49760 499 aaKnown RBP10□□□□□ -0.81
UPF3A-205ENST00000479712 PACS2Q86VP3 889 aa10□□□□□ -0.81
UPF3A-205ENST00000479712 C3orf80F5H4A9 247 aa9.99□□□□□ -0.81
UPF3A-205ENST00000479712 SULF1Q8IWU6 871 aa9.99□□□□□ -0.81
UPF3A-205ENST00000479712 TATDN2Q93075 761 aa9.99□□□□□ -0.81
UPF3A-205ENST00000479712 KCNH8Q96L42 1107 aa9.99□□□□□ -0.81
UPF3A-205ENST00000479712 KCNK17Q96T54 332 aa9.99□□□□□ -0.81
UPF3A-205ENST00000479712 MCM6Q14566 821 aa9.98□□□□□ -0.81
UPF3A-205ENST00000479712 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.98□□□□□ -0.81
UPF3A-205ENST00000479712 ARAP1Q96P48 1450 aa9.98□□□□□ -0.81
UPF3A-205ENST00000479712 CD46P15529 392 aa9.97□□□□□ -0.81
UPF3A-205ENST00000479712 PROX2Q3B8N5 592 aa9.97□□□□□ -0.81
UPF3A-205ENST00000479712 DDX11L8A8MPP1 907 aa9.96□□□□□ -0.82
UPF3A-205ENST00000479712 UBTFP17480 764 aaKnown RBP9.96□□□□□ -0.82
UPF3A-205ENST00000479712 TMEM134Q9H6X4 195 aa9.96□□□□□ -0.82
UPF3A-205ENST00000479712 SMAPO00193 183 aa9.95□□□□□ -0.82
UPF3A-205ENST00000479712 ANKRD13DQ6ZTN6 518 aa9.95□□□□□ -0.82
UPF3A-205ENST00000479712 FBXO41Q8TF61 875 aa9.95□□□□□ -0.82
UPF3A-205ENST00000479712 SPIRE2Q8WWL2 714 aa9.95□□□□□ -0.82
UPF3A-205ENST00000479712 NUTM1Q86Y26 1132 aa9.94□□□□□ -0.82
UPF3A-205ENST00000479712 CLUAP1Q96AJ1 413 aa9.94□□□□□ -0.82
UPF3A-205ENST00000479712 RIC3Q7Z5B4 369 aa9.93□□□□□ -0.82
UPF3A-205ENST00000479712 LIMD1Q9UGP4 676 aa9.93□□□□□ -0.82
UPF3A-205ENST00000479712 A6NJR5 290 aa9.92□□□□□ -0.82
UPF3A-205ENST00000479712 RFC5P40937 340 aa9.91□□□□□ -0.82
UPF3A-205ENST00000479712 RDH13Q8NBN7 331 aa9.91□□□□□ -0.82
UPF3A-205ENST00000479712 ZBED2Q9BTP6 218 aa9.91□□□□□ -0.82
UPF3A-205ENST00000479712 KIAA1468Q9P260 1216 aa9.91□□□□□ -0.82
UPF3A-205ENST00000479712 PSEN2P49810 448 aa9.9□□□□□ -0.82
UPF3A-205ENST00000479712 ARID3CA6NKF2 412 aa9.89□□□□□ -0.83
UPF3A-205ENST00000479712 SPTLC1O15269 473 aa9.89□□□□□ -0.83
UPF3A-205ENST00000479712 RSBN1LQ6PCB5 846 aaPredicted RBP9.89□□□□□ -0.83
UPF3A-205ENST00000479712 C1orf115Q9H7X2 142 aa9.89□□□□□ -0.83
UPF3A-205ENST00000479712 MOXD2PA6NHM9 499 aa9.88□□□□□ -0.83
UPF3A-205ENST00000479712 SPDYE5A6NIY4 337 aa9.88□□□□□ -0.83
UPF3A-205ENST00000479712 APBB1O00213 710 aa9.88□□□□□ -0.83
UPF3A-205ENST00000479712 LSM11P83369 360 aaKnown RBP eCLIP9.88□□□□□ -0.83
UPF3A-205ENST00000479712 TUSC1Q2TAM9 212 aa9.88□□□□□ -0.83
UPF3A-205ENST00000479712 PPP2R2DQ66LE6 453 aa9.88□□□□□ -0.83
UPF3A-205ENST00000479712 BANK1Q8NDB2 785 aa9.88□□□□□ -0.83
UPF3A-205ENST00000479712 ARHGAP33O14559 1287 aa9.87□□□□□ -0.83
UPF3A-205ENST00000479712 TRAK2O60296 914 aa9.87□□□□□ -0.83
UPF3A-205ENST00000479712 CSPP1Q1MSJ5 1256 aa9.87□□□□□ -0.83
UPF3A-205ENST00000479712 RSPH4AQ5TD94 716 aa9.87□□□□□ -0.83
UPF3A-205ENST00000479712 FBXO31Q5XUX0 539 aaPredicted RBP9.87□□□□□ -0.83
UPF3A-205ENST00000479712 ARID3AQ99856 593 aa9.87□□□□□ -0.83
UPF3A-205ENST00000479712 RAD21O60216 631 aa9.86□□□□□ -0.83
UPF3A-205ENST00000479712 GJA5P36382 358 aa9.86□□□□□ -0.83
UPF3A-205ENST00000479712 TMEM259Q4ZIN3 620 aa9.86□□□□□ -0.83
UPF3A-205ENST00000479712 RABGEF1Q9UJ41 708 aa9.86□□□□□ -0.83
UPF3A-205ENST00000479712 KDM4AO75164 1064 aa9.85□□□□□ -0.83
UPF3A-205ENST00000479712 NDUFV2P19404 249 aa9.85□□□□□ -0.83
UPF3A-205ENST00000479712 PROSER2Q86WR7 435 aaPredicted RBP9.85□□□□□ -0.83
UPF3A-205ENST00000479712 POM121Q96HA1 1249 aa9.85□□□□□ -0.83
UPF3A-205ENST00000479712 SEPT9Q9UHD8 586 aaPredicted RBP9.85□□□□□ -0.83
UPF3A-205ENST00000479712 ERCC6L2Q5T890 1561 aa9.84□□□□□ -0.83
UPF3A-205ENST00000479712 SWT1Q5T5J6 900 aaKnown RBP9.84□□□□□ -0.83
UPF3A-205ENST00000479712 SLC4A5Q9BY07 1137 aa9.84□□□□□ -0.83
UPF3A-205ENST00000479712 SNRKQ9NRH2 765 aa9.84□□□□□ -0.83
UPF3A-205ENST00000479712 DISP3Q9P2K9 1392 aa9.84□□□□□ -0.83
UPF3A-205ENST00000479712 NCAPD3P42695 1498 aa9.84□□□□□ -0.83
UPF3A-205ENST00000479712 WDR62O43379 1518 aa9.83□□□□□ -0.84
UPF3A-205ENST00000479712 GCGRP47871 477 aa9.83□□□□□ -0.84
UPF3A-205ENST00000479712 QPCTQ16769 361 aa9.83□□□□□ -0.84
UPF3A-205ENST00000479712 POTEEQ6S8J3 1075 aa9.83□□□□□ -0.84
UPF3A-205ENST00000479712 MRC2Q9UBG0 1479 aa9.83□□□□□ -0.84
UPF3A-205ENST00000479712 LILRB3O75022 631 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms