RNA–Protein interactions for RNA: ENST00000479300.1

VCP-205, Transcript of valosin containing protein, humanhuman

TSL 1 (best)

Gene VCP, Length 559 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-205ENST00000479300 PTPN23Q9H3S7 1636 aa10.47□□□□□ -0.73
VCP-205ENST00000479300 DAPK1P53355 1430 aa10.47□□□□□ -0.73
VCP-205ENST00000479300 PHLPP1O60346 1717 aa10.47□□□□□ -0.73
VCP-205ENST00000479300 ZFYVE9O95405 1425 aa10.46□□□□□ -0.74
VCP-205ENST00000479300 LOC105371045A0A1W2PR82 267 aa10.45□□□□□ -0.74
VCP-205ENST00000479300 CHD2O14647 1828 aaKnown RBP10.44□□□□□ -0.74
VCP-205ENST00000479300 MYO5BQ9ULV0 1848 aa10.44□□□□□ -0.74
VCP-205ENST00000479300 JCADQ9P266 1359 aa10.44□□□□□ -0.74
VCP-205ENST00000479300 SLAIN2Q9P270 581 aa10.44□□□□□ -0.74
VCP-205ENST00000479300 STAG3Q9UJ98 1225 aa10.44□□□□□ -0.74
VCP-205ENST00000479300 FGD6Q6ZV73 1430 aa10.43□□□□□ -0.74
VCP-205ENST00000479300 MSH6P52701 1360 aa10.43□□□□□ -0.74
VCP-205ENST00000479300 KANK1Q14678 1352 aa10.43□□□□□ -0.74
VCP-205ENST00000479300 NCBP3Q53F19 620 aaKnown RBP10.43□□□□□ -0.74
VCP-205ENST00000479300 CHIC2Q9UKJ5 165 aa10.42□□□□□ -0.74
VCP-205ENST00000479300 TMEM131LA2VDJ0 1609 aa10.42□□□□□ -0.74
VCP-205ENST00000479300 PLEKHG1Q9ULL1 1385 aa10.41□□□□□ -0.74
VCP-205ENST00000479300 GCC2Q8IWJ2 1684 aa10.41□□□□□ -0.74
VCP-205ENST00000479300 RIMS2Q9UQ26 1411 aa10.41□□□□□ -0.74
VCP-205ENST00000479300 AHDC1Q5TGY3 1603 aaPredicted RBP10.4□□□□□ -0.74
VCP-205ENST00000479300 ANKRD30AQ9BXX3 1397 aa10.4□□□□□ -0.74
VCP-205ENST00000479300 APLP2Q06481 763 aa10.4□□□□□ -0.74
VCP-205ENST00000479300 UPF1Q92900 1129 aaKnown RBP eCLIP10.4□□□□□ -0.74
VCP-205ENST00000479300 ADGRL2O95490 1459 aa10.4□□□□□ -0.74
VCP-205ENST00000479300 ADAMTS13Q76LX8 1427 aa10.4□□□□□ -0.75
VCP-205ENST00000479300 DIP2AQ14689 1571 aa10.39□□□□□ -0.75
VCP-205ENST00000479300 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.39□□□□□ -0.75
VCP-205ENST00000479300 SHPRHQ149N8 1683 aa10.39□□□□□ -0.75
VCP-205ENST00000479300 SLC52A1Q9NWF4 448 aa10.39□□□□□ -0.75
VCP-205ENST00000479300 RPRD2Q5VT52 1461 aaKnown RBP10.38□□□□□ -0.75
VCP-205ENST00000479300 PTPRUQ92729 1446 aa10.37□□□□□ -0.75
VCP-205ENST00000479300 TRIM52Q96A61 297 aa10.37□□□□□ -0.75
VCP-205ENST00000479300 TBX22Q9Y458 520 aa10.37□□□□□ -0.75
VCP-205ENST00000479300 SPATA31A6Q5VVP1 1343 aa10.36□□□□□ -0.75
VCP-205ENST00000479300 NCOA3Q9Y6Q9 1424 aa10.36□□□□□ -0.75
VCP-205ENST00000479300 NUTM2DQ5VT03 806 aaPredicted RBP10.36□□□□□ -0.75
VCP-205ENST00000479300 BCANQ96GW7 911 aa10.36□□□□□ -0.75
VCP-205ENST00000479300 ANKRD50Q9ULJ7 1429 aa10.35□□□□□ -0.75
VCP-205ENST00000479300 UNC13BO14795 1591 aa10.35□□□□□ -0.75
VCP-205ENST00000479300 E9PCH4 1651 aa10.34□□□□□ -0.75
VCP-205ENST00000479300 BRINP3Q76B58 766 aa10.34□□□□□ -0.75
VCP-205ENST00000479300 NRXN3Q9Y4C0 1643 aa10.33□□□□□ -0.76
VCP-205ENST00000479300 PPP1R15AO75807 674 aaPredicted RBP10.33□□□□□ -0.76
VCP-205ENST00000479300 ZNF772Q68DY9 489 aaPredicted RBP10.33□□□□□ -0.76
VCP-205ENST00000479300 C19orf44Q9H6X5 657 aa10.33□□□□□ -0.76
VCP-205ENST00000479300 SRCAPQ6ZRS2 3230 aa10.33□□□□□ -0.76
VCP-205ENST00000479300 XRN1Q8IZH2 1706 aaKnown RBP10.33□□□□□ -0.76
VCP-205ENST00000479300 ASXL1Q8IXJ9 1541 aa10.33□□□□□ -0.76
VCP-205ENST00000479300 CDK12Q9NYV4 1490 aaPredicted RBP10.32□□□□□ -0.76
VCP-205ENST00000479300 MEX3CQ5U5Q3 659 aaKnown RBP10.32□□□□□ -0.76
VCP-205ENST00000479300 CADPS2Q86UW7 1296 aa10.32□□□□□ -0.76
VCP-205ENST00000479300 NHSL1Q5SYE7 1610 aa10.32□□□□□ -0.76
VCP-205ENST00000479300 PIK3R4Q99570 1358 aa10.31□□□□□ -0.76
VCP-205ENST00000479300 MAPK8IP2Q13387 824 aaPredicted RBP10.31□□□□□ -0.76
VCP-205ENST00000479300 C14orf37Q86TY3 774 aa10.31□□□□□ -0.76
VCP-205ENST00000479300 RGS12O14924 1447 aa10.31□□□□□ -0.76
VCP-205ENST00000479300 MST1RQ04912 1400 aa10.31□□□□□ -0.76
VCP-205ENST00000479300 SETD5Q9C0A6 1442 aa10.31□□□□□ -0.76
VCP-205ENST00000479300 AFF2P51816 1311 aa10.31□□□□□ -0.76
VCP-205ENST00000479300 TRPM2O94759 1503 aa10.3□□□□□ -0.76
VCP-205ENST00000479300 NUTM2BA6NNL0 878 aaPredicted RBP10.3□□□□□ -0.76
VCP-205ENST00000479300 NUTM2EB1AL46 878 aaPredicted RBP10.3□□□□□ -0.76
VCP-205ENST00000479300 ATF3P18847 181 aa10.3□□□□□ -0.76
VCP-205ENST00000479300 RXRBP28702 533 aa10.3□□□□□ -0.76
VCP-205ENST00000479300 NUTM2AQ8IVF1 878 aaPredicted RBP10.3□□□□□ -0.76
VCP-205ENST00000479300 CNKSR2Q8WXI2 1034 aa10.3□□□□□ -0.76
VCP-205ENST00000479300 AMOTL2Q9Y2J4 779 aa10.3□□□□□ -0.76
VCP-205ENST00000479300 IQGAP3Q86VI3 1631 aa10.29□□□□□ -0.76
VCP-205ENST00000479300 MSH5O43196 834 aa10.29□□□□□ -0.76
VCP-205ENST00000479300 CHGAP10645 457 aaKnown RBP10.29□□□□□ -0.76
VCP-205ENST00000479300 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.29□□□□□ -0.76
VCP-205ENST00000479300 DDX17Q92841 729 aaKnown RBP10.29□□□□□ -0.76
VCP-205ENST00000479300 DCCP43146 1447 aa10.29□□□□□ -0.76
VCP-205ENST00000479300 SETBP1Q9Y6X0 1596 aa10.28□□□□□ -0.76
VCP-205ENST00000479300 ZBTB22O15209 634 aa10.28□□□□□ -0.76
VCP-205ENST00000479300 FAM50AQ14320 339 aaKnown RBP10.28□□□□□ -0.76
VCP-205ENST00000479300 METP08581 1390 aa10.27□□□□□ -0.76
VCP-205ENST00000479300 PNPLA6Q8IY17 1366 aa10.27□□□□□ -0.76
VCP-205ENST00000479300 HDGFP51858 240 aaKnown RBP10.27□□□□□ -0.77
VCP-205ENST00000479300 NALCNQ8IZF0 1738 aa10.27□□□□□ -0.77
VCP-205ENST00000479300 ADGRL3Q9HAR2 1447 aa10.24□□□□□ -0.77
VCP-205ENST00000479300 C8orf37Q96NL8 207 aa10.24□□□□□ -0.77
VCP-205ENST00000479300 QTRT2Q9H974 415 aaKnown RBP10.24□□□□□ -0.77
VCP-205ENST00000479300 LAMC1P11047 1609 aa10.24□□□□□ -0.77
VCP-205ENST00000479300 ROCK1Q13464 1354 aa10.23□□□□□ -0.77
VCP-205ENST00000479300 NEXMIFQ5QGS0 1516 aa10.23□□□□□ -0.77
VCP-205ENST00000479300 SPHKAPQ2M3C7 1700 aa10.22□□□□□ -0.77
VCP-205ENST00000479300 RBM6P78332 1123 aaKnown RBP10.22□□□□□ -0.77
VCP-205ENST00000479300 LRRC59Q96AG4 307 aaKnown RBP10.22□□□□□ -0.77
VCP-205ENST00000479300 NUP155O75694 1391 aa10.22□□□□□ -0.77
VCP-205ENST00000479300 C1orf167Q5SNV9 1468 aa10.22□□□□□ -0.77
VCP-205ENST00000479300 EP400Q96L91 3159 aa10.21□□□□□ -0.77
VCP-205ENST00000479300 CLTCL1P53675 1640 aa10.21□□□□□ -0.78
VCP-205ENST00000479300 ADAMTS2O95450 1211 aa10.2□□□□□ -0.78
VCP-205ENST00000479300 ROBO2Q9HCK4 1378 aa10.19□□□□□ -0.78
VCP-205ENST00000479300 SOS2Q07890 1332 aaPredicted RBP10.19□□□□□ -0.78
VCP-205ENST00000479300 ORAI2Q96SN7 254 aa10.19□□□□□ -0.78
VCP-205ENST00000479300 ATRNO75882 1429 aa10.18□□□□□ -0.78
VCP-205ENST00000479300 NGLY1Q96IV0 654 aa10.18□□□□□ -0.78
VCP-205ENST00000479300 COL22A1Q8NFW1 1626 aaPredicted RBP10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms