RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 NRXN1Q9ULB1 1477 aa18.94■□□□□ 0.62
CHD3-210ENST00000479080 ZEB1P37275 1124 aaPredicted RBP18.93■□□□□ 0.62
CHD3-210ENST00000479080 PRAG1Q86YV5 1406 aa18.91■□□□□ 0.62
CHD3-210ENST00000479080 SLIT1O75093 1534 aa18.91■□□□□ 0.62
CHD3-210ENST00000479080 DCAF11Q8TEB1 546 aa18.91■□□□□ 0.62
CHD3-210ENST00000479080 ADGRF5Q8IZF2 1346 aa18.91■□□□□ 0.62
CHD3-210ENST00000479080 RIMS2Q9UQ26 1411 aa18.91■□□□□ 0.62
CHD3-210ENST00000479080 TMEM2Q9UHN6 1383 aa18.9■□□□□ 0.62
CHD3-210ENST00000479080 ZNF326Q5BKZ1 582 aaKnown RBP18.89■□□□□ 0.61
CHD3-210ENST00000479080 RPGRIP1LQ68CZ1 1315 aa18.89■□□□□ 0.61
CHD3-210ENST00000479080 NUTM2DQ5VT03 806 aaPredicted RBP18.88■□□□□ 0.61
CHD3-210ENST00000479080 KDM2AQ9Y2K7 1162 aa18.88■□□□□ 0.61
CHD3-210ENST00000479080 PIK3C2GO75747 1445 aa18.87■□□□□ 0.61
CHD3-210ENST00000479080 LMTK3Q96Q04 1460 aa18.87■□□□□ 0.61
CHD3-210ENST00000479080 SETD1BQ9UPS6 1966 aaKnown RBP18.87■□□□□ 0.61
CHD3-210ENST00000479080 STAG3Q9UJ98 1225 aa18.86■□□□□ 0.61
CHD3-210ENST00000479080 TRPM1Q7Z4N2 1603 aa18.85■□□□□ 0.61
CHD3-210ENST00000479080 NRXN3Q9Y4C0 1643 aa18.85■□□□□ 0.61
CHD3-210ENST00000479080 LTKP29376 864 aa18.84■□□□□ 0.61
CHD3-210ENST00000479080 RALGAPBQ86X10 1494 aa18.84■□□□□ 0.61
CHD3-210ENST00000479080 ASXL1Q8IXJ9 1541 aa18.82■□□□□ 0.6
CHD3-210ENST00000479080 SETD1AO15047 1707 aaKnown RBP18.8■□□□□ 0.6
CHD3-210ENST00000479080 THEMISQ8N1K5 641 aaPredicted RBP18.8■□□□□ 0.6
CHD3-210ENST00000479080 STAC3Q96MF2 364 aa18.8■□□□□ 0.6
CHD3-210ENST00000479080 SETBP1Q9Y6X0 1596 aa18.8■□□□□ 0.6
CHD3-210ENST00000479080 IQGAP1P46940 1657 aa18.79■□□□□ 0.6
CHD3-210ENST00000479080 SCAF11Q99590 1463 aaKnown RBP18.79■□□□□ 0.6
CHD3-210ENST00000479080 KIAA1210Q9ULL0 1709 aa18.78■□□□□ 0.6
CHD3-210ENST00000479080 ADGRB1O14514 1584 aa18.78■□□□□ 0.6
CHD3-210ENST00000479080 ADAMTS13Q76LX8 1427 aa18.78■□□□□ 0.6
CHD3-210ENST00000479080 NBPF1Q3BBV0 1214 aa18.78■□□□□ 0.6
CHD3-210ENST00000479080 GPRASP1Q5JY77 1395 aa18.78■□□□□ 0.6
CHD3-210ENST00000479080 PLEKHG1Q9ULL1 1385 aa18.78■□□□□ 0.6
CHD3-210ENST00000479080 VGFO15240 615 aaPredicted RBP18.77■□□□□ 0.6
CHD3-210ENST00000479080 CFAP70Q5T0N1 1121 aa18.77■□□□□ 0.6
CHD3-210ENST00000479080 SENP3Q9H4L4 574 aaPredicted RBP18.77■□□□□ 0.6
CHD3-210ENST00000479080 ALKQ9UM73 1620 aa18.77■□□□□ 0.6
CHD3-210ENST00000479080 MED14O60244 1454 aa18.77■□□□□ 0.59
CHD3-210ENST00000479080 HSPA2P54652 639 aa18.76■□□□□ 0.59
CHD3-210ENST00000479080 TXNDC2Q86VQ3 553 aa18.76■□□□□ 0.59
CHD3-210ENST00000479080 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.76■□□□□ 0.59
CHD3-210ENST00000479080 C14orf93Q9H972 538 aaKnown RBP18.75■□□□□ 0.59
CHD3-210ENST00000479080 LAMC1P11047 1609 aa18.74■□□□□ 0.59
CHD3-210ENST00000479080 POLR1AO95602 1720 aaPredicted RBP18.73■□□□□ 0.59
CHD3-210ENST00000479080 NCKAP5LQ9HCH0 1330 aa18.72■□□□□ 0.59
CHD3-210ENST00000479080 ROCK2O75116 1388 aaKnown RBP18.7■□□□□ 0.58
CHD3-210ENST00000479080 METP08581 1390 aa18.69■□□□□ 0.58
CHD3-210ENST00000479080 NPHP4O75161 1426 aaPredicted RBP18.69■□□□□ 0.58
CHD3-210ENST00000479080 STRCQ7RTU9 1775 aa18.69■□□□□ 0.58
CHD3-210ENST00000479080 ANKLE2Q86XL3 938 aa18.69■□□□□ 0.58
CHD3-210ENST00000479080 EID1Q9Y6B2 187 aa18.69■□□□□ 0.58
CHD3-210ENST00000479080 PTPRUQ92729 1446 aa18.67■□□□□ 0.58
CHD3-210ENST00000479080 HDGFP51858 240 aaKnown RBP18.67■□□□□ 0.58
CHD3-210ENST00000479080 TMEM132EQ6IEE7 984 aa18.67■□□□□ 0.58
CHD3-210ENST00000479080 DIP2AQ14689 1571 aa18.67■□□□□ 0.58
CHD3-210ENST00000479080 CARD11Q9BXL7 1154 aa18.65■□□□□ 0.58
CHD3-210ENST00000479080 SLC26A8Q96RN1 970 aa18.64■□□□□ 0.57
CHD3-210ENST00000479080 USP47Q96K76 1375 aa18.64■□□□□ 0.57
CHD3-210ENST00000479080 YTHDC2Q9H6S0 1430 aaKnown RBP18.63■□□□□ 0.57
CHD3-210ENST00000479080 HSPA5P11021 654 aaKnown RBP18.62■□□□□ 0.57
CHD3-210ENST00000479080 TBX22Q9Y458 520 aa18.62■□□□□ 0.57
CHD3-210ENST00000479080 LRPPRCP42704 1394 aaKnown RBP18.61■□□□□ 0.57
CHD3-210ENST00000479080 XRN1Q8IZH2 1706 aaKnown RBP18.6■□□□□ 0.57
CHD3-210ENST00000479080 ARHGEF28Q8N1W1 1705 aaKnown RBP18.6■□□□□ 0.57
CHD3-210ENST00000479080 KNDC1Q76NI1 1749 aa18.6■□□□□ 0.57
CHD3-210ENST00000479080 TECPR2O15040 1411 aa18.59■□□□□ 0.57
CHD3-210ENST00000479080 HIRIP3Q9BW71 556 aaPredicted RBP18.59■□□□□ 0.57
CHD3-210ENST00000479080 CPS1P31327 1500 aa18.59■□□□□ 0.57
CHD3-210ENST00000479080 DLC1Q96QB1 1528 aa18.59■□□□□ 0.57
CHD3-210ENST00000479080 ABCC11Q96J66 1382 aa18.57■□□□□ 0.56
CHD3-210ENST00000479080 NWD1Q149M9 1564 aa18.57■□□□□ 0.56
CHD3-210ENST00000479080 BCANQ96GW7 911 aa18.57■□□□□ 0.56
CHD3-210ENST00000479080 TRAK1Q9UPV9 953 aa18.56■□□□□ 0.56
CHD3-210ENST00000479080 PIK3R4Q99570 1358 aa18.55■□□□□ 0.56
CHD3-210ENST00000479080 ROBO2Q9HCK4 1378 aa18.55■□□□□ 0.56
CHD3-210ENST00000479080 PLEKHH1Q9ULM0 1364 aa18.55■□□□□ 0.56
CHD3-210ENST00000479080 EIF4G2P78344 907 aaKnown RBP eCLIP18.55■□□□□ 0.56
CHD3-210ENST00000479080 STK26Q9P289 416 aa18.55■□□□□ 0.56
CHD3-210ENST00000479080 ST20-MTHFSA0A0A6YYL1 179 aa18.54■□□□□ 0.56
CHD3-210ENST00000479080 TESK2Q96S53 571 aa18.54■□□□□ 0.56
CHD3-210ENST00000479080 CHD2O14647 1828 aaKnown RBP18.53■□□□□ 0.56
CHD3-210ENST00000479080 STRCP1A6NGW2 1772 aa18.53■□□□□ 0.56
CHD3-210ENST00000479080 PTCH1Q13635 1447 aa18.52■□□□□ 0.56
CHD3-210ENST00000479080 AMOTL2Q9Y2J4 779 aa18.51■□□□□ 0.55
CHD3-210ENST00000479080 QRICH2Q9H0J4 1663 aa18.5■□□□□ 0.55
CHD3-210ENST00000479080 FAM135BQ49AJ0 1406 aa18.5■□□□□ 0.55
CHD3-210ENST00000479080 C11orf95C9JLR9 678 aaPredicted RBP18.5■□□□□ 0.55
CHD3-210ENST00000479080 KCNA6P17658 529 aa18.5■□□□□ 0.55
CHD3-210ENST00000479080 EIF3AQ14152 1382 aaKnown RBP18.49■□□□□ 0.55
CHD3-210ENST00000479080 TULP4Q9NRJ4 1543 aa18.49■□□□□ 0.55
CHD3-210ENST00000479080 CENPJQ9HC77 1338 aaPredicted RBP18.49■□□□□ 0.55
CHD3-210ENST00000479080 SBNO2Q9Y2G9 1366 aa18.48■□□□□ 0.55
CHD3-210ENST00000479080 WAPLQ7Z5K2 1190 aa18.48■□□□□ 0.55
CHD3-210ENST00000479080 PRAM1Q96QH2 718 aa18.48■□□□□ 0.55
CHD3-210ENST00000479080 DISP3Q9P2K9 1392 aa18.47■□□□□ 0.55
CHD3-210ENST00000479080 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.47■□□□□ 0.55
CHD3-210ENST00000479080 SIRT1Q96EB6 747 aa18.47■□□□□ 0.55
CHD3-210ENST00000479080 ZNF316A6NFI3 1004 aaPredicted RBP18.45■□□□□ 0.54
CHD3-210ENST00000479080 NKTRP30414 1462 aaKnown RBP18.45■□□□□ 0.54
CHD3-210ENST00000479080 SAFB2Q14151 953 aaKnown RBP eCLIP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms