RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 SULF1Q8IWU6 871 aa11.81□□□□□ -0.52
VPS50-212ENST00000476413 ARHGAP33O14559 1287 aa11.8□□□□□ -0.52
VPS50-212ENST00000476413 DMRTA1Q5VZB9 504 aa11.8□□□□□ -0.52
VPS50-212ENST00000476413 ERBB3P21860 1342 aa11.8□□□□□ -0.52
VPS50-212ENST00000476413 SLC4A5Q9BY07 1137 aa11.79□□□□□ -0.52
VPS50-212ENST00000476413 KCNH8Q96L42 1107 aa11.78□□□□□ -0.52
VPS50-212ENST00000476413 ARXQ96QS3 562 aa11.78□□□□□ -0.52
VPS50-212ENST00000476413 RABGEF1Q9UJ41 708 aa11.78□□□□□ -0.52
VPS50-212ENST00000476413 AXIN2Q9Y2T1 843 aa11.78□□□□□ -0.52
VPS50-212ENST00000476413 SPTLC1O15269 473 aa11.77□□□□□ -0.53
VPS50-212ENST00000476413 TUSC1Q2TAM9 212 aa11.77□□□□□ -0.53
VPS50-212ENST00000476413 RIC3Q7Z5B4 369 aa11.77□□□□□ -0.53
VPS50-212ENST00000476413 PPP2R2DQ66LE6 453 aa11.76□□□□□ -0.53
VPS50-212ENST00000476413 RSBN1LQ6PCB5 846 aaPredicted RBP11.76□□□□□ -0.53
VPS50-212ENST00000476413 MOXD2PA6NHM9 499 aa11.75□□□□□ -0.53
VPS50-212ENST00000476413 POTEMA6NI47 508 aa11.75□□□□□ -0.53
VPS50-212ENST00000476413 RFC5P40937 340 aa11.75□□□□□ -0.53
VPS50-212ENST00000476413 SLC10A3P09131 477 aa11.74□□□□□ -0.53
VPS50-212ENST00000476413 MARVELD3Q96A59 401 aa11.74□□□□□ -0.53
VPS50-212ENST00000476413 CLUAP1Q96AJ1 413 aa11.74□□□□□ -0.53
VPS50-212ENST00000476413 C1orf115Q9H7X2 142 aa11.74□□□□□ -0.53
VPS50-212ENST00000476413 PLSCR2Q9NRY7 297 aa11.74□□□□□ -0.53
VPS50-212ENST00000476413 SEPT9Q9UHD8 586 aaPredicted RBP11.74□□□□□ -0.53
VPS50-212ENST00000476413 SWT1Q5T5J6 900 aaKnown RBP11.73□□□□□ -0.53
VPS50-212ENST00000476413 NUTM1Q86Y26 1132 aa11.73□□□□□ -0.53
VPS50-212ENST00000476413 VPS9D1Q9Y2B5 631 aa11.73□□□□□ -0.53
VPS50-212ENST00000476413 A6NJR5 290 aa11.72□□□□□ -0.53
VPS50-212ENST00000476413 NDUFV2P19404 249 aa11.72□□□□□ -0.53
VPS50-212ENST00000476413 GJA5P36382 358 aa11.72□□□□□ -0.53
VPS50-212ENST00000476413 PBX2P40425 430 aa11.72□□□□□ -0.53
VPS50-212ENST00000476413 EMP3P54852 163 aa11.72□□□□□ -0.53
VPS50-212ENST00000476413 POTEGQ6S5H5 508 aa11.72□□□□□ -0.53
VPS50-212ENST00000476413 ZNF687Q8N1G0 1237 aa11.72□□□□□ -0.53
VPS50-212ENST00000476413 RDH13Q8NBN7 331 aa11.72□□□□□ -0.53
VPS50-212ENST00000476413 ATP1B4Q9UN42 357 aaPredicted RBP11.72□□□□□ -0.53
VPS50-212ENST00000476413 POTEB3A0JP26 581 aa11.71□□□□□ -0.53
VPS50-212ENST00000476413 GCGRP47871 477 aa11.71□□□□□ -0.53
VPS50-212ENST00000476413 POTEBQ6S5H4 581 aa11.71□□□□□ -0.53
VPS50-212ENST00000476413 QPCTQ16769 361 aa11.7□□□□□ -0.54
VPS50-212ENST00000476413 PCDHB15Q9Y5E8 787 aa11.7□□□□□ -0.54
VPS50-212ENST00000476413 KDM4AO75164 1064 aa11.69□□□□□ -0.54
VPS50-212ENST00000476413 UBTFP17480 764 aaKnown RBP11.69□□□□□ -0.54
VPS50-212ENST00000476413 BANK1Q8NDB2 785 aa11.69□□□□□ -0.54
VPS50-212ENST00000476413 FAM205CA6NFA0 338 aa11.68□□□□□ -0.54
VPS50-212ENST00000476413 SPDYE5A6NIY4 337 aa11.68□□□□□ -0.54
VPS50-212ENST00000476413 BHMG1C9JSJ3 638 aaPredicted RBP11.68□□□□□ -0.54
VPS50-212ENST00000476413 LILRB3O75022 631 aa11.68□□□□□ -0.54
VPS50-212ENST00000476413 FAM98CQ17RN3 349 aaKnown RBP11.68□□□□□ -0.54
VPS50-212ENST00000476413 POM121Q96HA1 1249 aa11.68□□□□□ -0.54
VPS50-212ENST00000476413 SNRKQ9NRH2 765 aa11.68□□□□□ -0.54
VPS50-212ENST00000476413 HOXA2O43364 376 aa11.67□□□□□ -0.54
VPS50-212ENST00000476413 CSPP1Q1MSJ5 1256 aa11.66□□□□□ -0.54
VPS50-212ENST00000476413 USP46P62068 366 aa11.65□□□□□ -0.54
VPS50-212ENST00000476413 TMEM259Q4ZIN3 620 aa11.65□□□□□ -0.54
VPS50-212ENST00000476413 LCE2DQ5TA82 110 aaPredicted RBP11.65□□□□□ -0.54
VPS50-212ENST00000476413 HLA-CQ95604 372 aa11.65□□□□□ -0.54
VPS50-212ENST00000476413 FAM163AQ96GL9 167 aaPredicted RBP11.65□□□□□ -0.54
VPS50-212ENST00000476413 ARID3CA6NKF2 412 aa11.64□□□□□ -0.55
VPS50-212ENST00000476413 TRAK2O60296 914 aa11.64□□□□□ -0.55
VPS50-212ENST00000476413 RTL5Q5HYW3 569 aaPredicted RBP11.64□□□□□ -0.55
VPS50-212ENST00000476413 SAMD7Q7Z3H4 446 aa11.64□□□□□ -0.55
VPS50-212ENST00000476413 LAPTM4BQ86VI4 370 aa11.64□□□□□ -0.55
VPS50-212ENST00000476413 FNBP4Q8N3X1 1017 aaPredicted RBP11.64□□□□□ -0.55
VPS50-212ENST00000476413 CABLES1Q8TDN4 633 aa11.64□□□□□ -0.55
VPS50-212ENST00000476413 HS3ST6Q96QI5 342 aa11.64□□□□□ -0.55
VPS50-212ENST00000476413 PCDHGC3Q9UN70 934 aa11.64□□□□□ -0.55
VPS50-212ENST00000476413 TK2O00142 265 aa11.62□□□□□ -0.55
VPS50-212ENST00000476413 GUCA2AQ02747 115 aa11.62□□□□□ -0.55
VPS50-212ENST00000476413 RSPH4AQ5TD94 716 aa11.62□□□□□ -0.55
VPS50-212ENST00000476413 PRPF38BQ5VTL8 546 aaKnown RBP11.62□□□□□ -0.55
VPS50-212ENST00000476413 HOMEZQ8IX15 550 aa11.62□□□□□ -0.55
VPS50-212ENST00000476413 MTMR14Q8NCE2 650 aa11.62□□□□□ -0.55
VPS50-212ENST00000476413 FDX1P10109 184 aa11.61□□□□□ -0.55
VPS50-212ENST00000476413 COG6Q9Y2V7 657 aa11.61□□□□□ -0.55
VPS50-212ENST00000476413 HRCP23327 699 aa11.6□□□□□ -0.55
VPS50-212ENST00000476413 NBPF3Q9H094 633 aa11.6□□□□□ -0.55
VPS50-212ENST00000476413 APBB1O00213 710 aa11.59□□□□□ -0.55
VPS50-212ENST00000476413 PROSER2Q86WR7 435 aaPredicted RBP11.59□□□□□ -0.55
VPS50-212ENST00000476413 SLF2Q8IX21 1173 aa11.59□□□□□ -0.55
VPS50-212ENST00000476413 ZFRQ96KR1 1074 aaKnown RBP11.59□□□□□ -0.55
VPS50-212ENST00000476413 SOCS7O14512 581 aa11.58□□□□□ -0.56
VPS50-212ENST00000476413 ZBTB3Q9H5J0 574 aa11.58□□□□□ -0.56
VPS50-212ENST00000476413 HRO43593 1189 aa11.57□□□□□ -0.56
VPS50-212ENST00000476413 CFHP08603 1231 aa11.57□□□□□ -0.56
VPS50-212ENST00000476413 HDGFP51858 240 aaKnown RBP11.57□□□□□ -0.56
VPS50-212ENST00000476413 FUT2Q10981 343 aa11.57□□□□□ -0.56
VPS50-212ENST00000476413 LSM11P83369 360 aaKnown RBP eCLIP11.56□□□□□ -0.56
VPS50-212ENST00000476413 ADGRD1Q6QNK2 874 aa11.56□□□□□ -0.56
VPS50-212ENST00000476413 PCDH10Q9P2E7 1040 aa11.56□□□□□ -0.56
VPS50-212ENST00000476413 NUTM2BA6NNL0 878 aaPredicted RBP11.55□□□□□ -0.56
VPS50-212ENST00000476413 NUTM2EB1AL46 878 aaPredicted RBP11.55□□□□□ -0.56
VPS50-212ENST00000476413 AP1G2O75843 785 aa11.55□□□□□ -0.56
VPS50-212ENST00000476413 NUTM2DQ5VT03 806 aaPredicted RBP11.55□□□□□ -0.56
VPS50-212ENST00000476413 NUTM2AQ8IVF1 878 aaPredicted RBP11.55□□□□□ -0.56
VPS50-212ENST00000476413 RAD21O60216 631 aa11.54□□□□□ -0.56
VPS50-212ENST00000476413 USP17L8P0C7I0 530 aa11.54□□□□□ -0.56
VPS50-212ENST00000476413 SLC4A3P48751 1232 aa11.52□□□□□ -0.57
VPS50-212ENST00000476413 MRPL50Q8N5N7 158 aaKnown RBP11.52□□□□□ -0.57
VPS50-212ENST00000476413 ARID3AQ99856 593 aa11.52□□□□□ -0.57
VPS50-212ENST00000476413 RNF40O75150 1001 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms