RNA–Protein interactions for RNA: ENST00000475375.1

VPS36-203, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 2

Gene VPS36, Length 754 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-203ENST00000475375 MSH6P52701 1360 aa31.82■■■□□ 2.69
VPS36-203ENST00000475375 PPP1R15AO75807 674 aaPredicted RBP31.8■■■□□ 2.68
VPS36-203ENST00000475375 POTEAQ6S8J7 498 aa31.79■■■□□ 2.68
VPS36-203ENST00000475375 ADGRL2O95490 1459 aa31.78■■■□□ 2.68
VPS36-203ENST00000475375 NWD1Q149M9 1564 aa31.78■■■□□ 2.68
VPS36-203ENST00000475375 ANKRD50Q9ULJ7 1429 aa31.76■■■□□ 2.68
VPS36-203ENST00000475375 SLAIN2Q9P270 581 aa31.76■■■□□ 2.67
VPS36-203ENST00000475375 RPRD2Q5VT52 1461 aaKnown RBP31.76■■■□□ 2.67
VPS36-203ENST00000475375 HDGFP51858 240 aaKnown RBP31.74■■■□□ 2.67
VPS36-203ENST00000475375 PLEKHG1Q9ULL1 1385 aa31.73■■■□□ 2.67
VPS36-203ENST00000475375 ZFYVE9O95405 1425 aa31.72■■■□□ 2.67
VPS36-203ENST00000475375 RIMS2Q9UQ26 1411 aa31.72■■■□□ 2.67
VPS36-203ENST00000475375 CHGAP10645 457 aaKnown RBP31.71■■■□□ 2.67
VPS36-203ENST00000475375 C14orf37Q86TY3 774 aa31.69■■■□□ 2.66
VPS36-203ENST00000475375 PHLPP1O60346 1717 aa31.68■■■□□ 2.66
VPS36-203ENST00000475375 GCC2Q8IWJ2 1684 aa31.67■■■□□ 2.66
VPS36-203ENST00000475375 MYO5BQ9ULV0 1848 aa31.67■■■□□ 2.66
VPS36-203ENST00000475375 JCADQ9P266 1359 aa31.67■■■□□ 2.66
VPS36-203ENST00000475375 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.64■■■□□ 2.66
VPS36-203ENST00000475375 CHD2O14647 1828 aaKnown RBP31.63■■■□□ 2.65
VPS36-203ENST00000475375 NUTM2DQ5VT03 806 aaPredicted RBP31.63■■■□□ 2.65
VPS36-203ENST00000475375 TBX22Q9Y458 520 aa31.63■■■□□ 2.65
VPS36-203ENST00000475375 TMEM131LA2VDJ0 1609 aa31.63■■■□□ 2.65
VPS36-203ENST00000475375 NCOA3Q9Y6Q9 1424 aa31.56■■■□□ 2.64
VPS36-203ENST00000475375 UNC13BO14795 1591 aa31.56■■■□□ 2.64
VPS36-203ENST00000475375 MEX3CQ5U5Q3 659 aaKnown RBP31.55■■■□□ 2.64
VPS36-203ENST00000475375 ATF3P18847 181 aa31.54■■■□□ 2.64
VPS36-203ENST00000475375 COL16A1Q07092 1604 aaPredicted RBP31.53■■■□□ 2.64
VPS36-203ENST00000475375 CADPS2Q86UW7 1296 aa31.53■■■□□ 2.64
VPS36-203ENST00000475375 ADAMTS13Q76LX8 1427 aa31.52■■■□□ 2.64
VPS36-203ENST00000475375 C19orf44Q9H6X5 657 aa31.51■■■□□ 2.63
VPS36-203ENST00000475375 SETD1AO15047 1707 aaKnown RBP31.51■■■□□ 2.63
VPS36-203ENST00000475375 E9PCH4 1651 aa31.51■■■□□ 2.63
VPS36-203ENST00000475375 DIP2AQ14689 1571 aa31.5■■■□□ 2.63
VPS36-203ENST00000475375 SPATA31A6Q5VVP1 1343 aa31.49■■■□□ 2.63
VPS36-203ENST00000475375 PIK3R4Q99570 1358 aa31.48■■■□□ 2.63
VPS36-203ENST00000475375 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.46■■■□□ 2.63
VPS36-203ENST00000475375 LRP6O75581 1613 aa31.46■■■□□ 2.63
VPS36-203ENST00000475375 AMOTL2Q9Y2J4 779 aa31.45■■■□□ 2.63
VPS36-203ENST00000475375 NUP155O75694 1391 aa31.44■■■□□ 2.62
VPS36-203ENST00000475375 ROCK1Q13464 1354 aa31.44■■■□□ 2.62
VPS36-203ENST00000475375 TRPM2O94759 1503 aa31.44■■■□□ 2.62
VPS36-203ENST00000475375 IQGAP3Q86VI3 1631 aa31.43■■■□□ 2.62
VPS36-203ENST00000475375 ZNF772Q68DY9 489 aaPredicted RBP31.43■■■□□ 2.62
VPS36-203ENST00000475375 AHDC1Q5TGY3 1603 aaPredicted RBP31.42■■■□□ 2.62
VPS36-203ENST00000475375 ITGAEP38570 1179 aa31.42■■■□□ 2.62
VPS36-203ENST00000475375 TRIM52Q96A61 297 aa31.4■■■□□ 2.62
VPS36-203ENST00000475375 NUTM2BA6NNL0 878 aaPredicted RBP31.38■■■□□ 2.61
VPS36-203ENST00000475375 NUTM2EB1AL46 878 aaPredicted RBP31.38■■■□□ 2.61
VPS36-203ENST00000475375 BRINP3Q76B58 766 aa31.38■■■□□ 2.61
VPS36-203ENST00000475375 NUTM2AQ8IVF1 878 aaPredicted RBP31.38■■■□□ 2.61
VPS36-203ENST00000475375 PTPRUQ92729 1446 aa31.38■■■□□ 2.61
VPS36-203ENST00000475375 SHPRHQ149N8 1683 aa31.36■■■□□ 2.61
VPS36-203ENST00000475375 ZNF326Q5BKZ1 582 aaKnown RBP31.34■■■□□ 2.61
VPS36-203ENST00000475375 DCCP43146 1447 aa31.31■■■□□ 2.6
VPS36-203ENST00000475375 RXRBP28702 533 aa31.29■■■□□ 2.6
VPS36-203ENST00000475375 UPF1Q92900 1129 aaKnown RBP eCLIP31.28■■■□□ 2.6
VPS36-203ENST00000475375 ASXL1Q8IXJ9 1541 aa31.28■■■□□ 2.6
VPS36-203ENST00000475375 XRN1Q8IZH2 1706 aaKnown RBP31.25■■■□□ 2.59
VPS36-203ENST00000475375 SETBP1Q9Y6X0 1596 aa31.25■■■□□ 2.59
VPS36-203ENST00000475375 NRXN3Q9Y4C0 1643 aa31.24■■■□□ 2.59
VPS36-203ENST00000475375 MST1RQ04912 1400 aa31.24■■■□□ 2.59
VPS36-203ENST00000475375 METP08581 1390 aa31.23■■■□□ 2.59
VPS36-203ENST00000475375 SPHKAPQ2M3C7 1700 aa31.23■■■□□ 2.59
VPS36-203ENST00000475375 AFF2P51816 1311 aa31.23■■■□□ 2.59
VPS36-203ENST00000475375 PPARGC1BQ86YN6 1023 aaKnown RBP31.22■■■□□ 2.59
VPS36-203ENST00000475375 LRRC59Q96AG4 307 aaKnown RBP31.21■■■□□ 2.59
VPS36-203ENST00000475375 SETD5Q9C0A6 1442 aa31.2■■■□□ 2.59
VPS36-203ENST00000475375 DDX17Q92841 729 aaKnown RBP31.17■■■□□ 2.58
VPS36-203ENST00000475375 ADGRL3Q9HAR2 1447 aa31.16■■■□□ 2.58
VPS36-203ENST00000475375 C8orf37Q96NL8 207 aa31.16■■■□□ 2.58
VPS36-203ENST00000475375 NHSL1Q5SYE7 1610 aa31.15■■■□□ 2.58
VPS36-203ENST00000475375 CDK12Q9NYV4 1490 aaPredicted RBP31.14■■■□□ 2.57
VPS36-203ENST00000475375 PNPLA6Q8IY17 1366 aa31.11■■■□□ 2.57
VPS36-203ENST00000475375 CLTCL1P53675 1640 aa31.09■■■□□ 2.57
VPS36-203ENST00000475375 NEXMIFQ5QGS0 1516 aa31.09■■■□□ 2.57
VPS36-203ENST00000475375 QTRT2Q9H974 415 aaKnown RBP31.09■■■□□ 2.57
VPS36-203ENST00000475375 NALCNQ8IZF0 1738 aa31.08■■■□□ 2.57
VPS36-203ENST00000475375 ADAMTS2O95450 1211 aa31.05■■■□□ 2.56
VPS36-203ENST00000475375 RBM6P78332 1123 aaKnown RBP31.05■■■□□ 2.56
VPS36-203ENST00000475375 NGLY1Q96IV0 654 aa31.04■■■□□ 2.56
VPS36-203ENST00000475375 C1orf167Q5SNV9 1468 aa31.03■■■□□ 2.56
VPS36-203ENST00000475375 RGS12O14924 1447 aa31.02■■■□□ 2.56
VPS36-203ENST00000475375 KIF1BO60333 1816 aa31.01■■■□□ 2.55
VPS36-203ENST00000475375 VGFO15240 615 aaPredicted RBP31■■■□□ 2.55
VPS36-203ENST00000475375 PTCH1Q13635 1447 aa30.98■■■□□ 2.55
VPS36-203ENST00000475375 ROBO2Q9HCK4 1378 aa30.98■■■□□ 2.55
VPS36-203ENST00000475375 ORAI2Q96SN7 254 aa30.98■■■□□ 2.55
VPS36-203ENST00000475375 NAIPQ13075 1403 aa30.93■■■□□ 2.54
VPS36-203ENST00000475375 SOS2Q07890 1332 aaPredicted RBP30.93■■■□□ 2.54
VPS36-203ENST00000475375 USP21Q9UK80 565 aa30.92■■■□□ 2.54
VPS36-203ENST00000475375 RPGRIP1LQ68CZ1 1315 aa30.89■■■□□ 2.54
VPS36-203ENST00000475375 LAMC1P11047 1609 aa30.88■■■□□ 2.53
VPS36-203ENST00000475375 SLC4A1APQ9BWU0 796 aaKnown RBP30.87■■■□□ 2.53
VPS36-203ENST00000475375 TRPC5Q9UL62 973 aaPredicted RBP30.87■■■□□ 2.53
VPS36-203ENST00000475375 HFM1A2PYH4 1435 aa30.87■■■□□ 2.53
VPS36-203ENST00000475375 ATAD2Q6PL18 1390 aa30.86■■■□□ 2.53
VPS36-203ENST00000475375 RRBP1Q9P2E9 1410 aaKnown RBP30.85■■■□□ 2.53
VPS36-203ENST00000475375 ESCO1Q5FWF5 840 aa30.84■■■□□ 2.53
VPS36-203ENST00000475375 PRAG1Q86YV5 1406 aa30.82■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms