RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 MAPK8IP3Q9UPT6 1336 aa7.93□□□□□ -1.14
HERC4-209ENST00000473533 SALL2Q9Y467 1007 aaPredicted RBP7.93□□□□□ -1.14
HERC4-209ENST00000473533 CGNL1Q0VF96 1302 aa7.93□□□□□ -1.14
HERC4-209ENST00000473533 IQGAP1P46940 1657 aa7.93□□□□□ -1.14
HERC4-209ENST00000473533 KIAA1210Q9ULL0 1709 aa7.93□□□□□ -1.14
HERC4-209ENST00000473533 E9PSI1 815 aa7.92□□□□□ -1.14
HERC4-209ENST00000473533 RGL3Q3MIN7 710 aa7.92□□□□□ -1.14
HERC4-209ENST00000473533 CDCA7LQ96GN5 454 aa7.92□□□□□ -1.14
HERC4-209ENST00000473533 NKTRP30414 1462 aaKnown RBP7.92□□□□□ -1.14
HERC4-209ENST00000473533 PLA2R1Q13018 1463 aa7.92□□□□□ -1.14
HERC4-209ENST00000473533 PPP2R1AP30153 589 aa7.92□□□□□ -1.14
HERC4-209ENST00000473533 NBPF1Q3BBV0 1214 aa7.91□□□□□ -1.14
HERC4-209ENST00000473533 DUSP27Q5VZP5 1158 aa7.91□□□□□ -1.14
HERC4-209ENST00000473533 UPF2Q9HAU5 1272 aaKnown RBP7.91□□□□□ -1.14
HERC4-209ENST00000473533 MADDQ8WXG6 1647 aa7.91□□□□□ -1.14
HERC4-209ENST00000473533 TTC37Q6PGP7 1564 aa7.91□□□□□ -1.14
HERC4-209ENST00000473533 TRPM2O94759 1503 aa7.91□□□□□ -1.14
HERC4-209ENST00000473533 WDR7Q9Y4E6 1490 aa7.91□□□□□ -1.14
HERC4-209ENST00000473533 PDE3AQ14432 1141 aa7.91□□□□□ -1.14
HERC4-209ENST00000473533 SPHKAPQ2M3C7 1700 aa7.91□□□□□ -1.14
HERC4-209ENST00000473533 KDM5AP29375 1690 aaKnown RBP7.91□□□□□ -1.14
HERC4-209ENST00000473533 SHROOM2Q13796 1616 aa7.91□□□□□ -1.14
HERC4-209ENST00000473533 KANK1Q14678 1352 aa7.9□□□□□ -1.14
HERC4-209ENST00000473533 ZNF521Q96K83 1311 aa7.9□□□□□ -1.14
HERC4-209ENST00000473533 NFKBIBQ15653 356 aa7.9□□□□□ -1.14
HERC4-209ENST00000473533 ADAMTS8Q9UP79 889 aa7.9□□□□□ -1.14
HERC4-209ENST00000473533 RTEL1-TNFRSF6BF6WH68 1400 aa7.9□□□□□ -1.14
HERC4-209ENST00000473533 SLFN5Q08AF3 891 aa7.9□□□□□ -1.14
HERC4-209ENST00000473533 EFCAB2Q5VUJ9 269 aa7.9□□□□□ -1.15
HERC4-209ENST00000473533 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.9□□□□□ -1.15
HERC4-209ENST00000473533 CEP152O94986 1710 aa7.9□□□□□ -1.15
HERC4-209ENST00000473533 ARAP3Q8WWN8 1544 aa7.89□□□□□ -1.15
HERC4-209ENST00000473533 PLIN1O60240 522 aa7.89□□□□□ -1.15
HERC4-209ENST00000473533 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.89□□□□□ -1.155e-7■□□□□ 10.2
HERC4-209ENST00000473533 NCBP3Q53F19 620 aaKnown RBP7.89□□□□□ -1.15
HERC4-209ENST00000473533 PMFBP1Q8TBY8 1022 aa7.89□□□□□ -1.15
HERC4-209ENST00000473533 VIRMAQ69YN4 1812 aaKnown RBP7.88□□□□□ -1.15
HERC4-209ENST00000473533 TRMT2AQ8IZ69 625 aaKnown RBP7.88□□□□□ -1.15
HERC4-209ENST00000473533 AMER1Q5JTC6 1135 aaPredicted RBP7.88□□□□□ -1.15
HERC4-209ENST00000473533 L1TD1Q5T7N2 865 aaKnown RBP7.88□□□□□ -1.15
HERC4-209ENST00000473533 PLCH2O75038 1416 aa7.88□□□□□ -1.15
HERC4-209ENST00000473533 CANXP27824 592 aaKnown RBP7.87□□□□□ -1.15
HERC4-209ENST00000473533 PTPRTO14522 1441 aa7.87□□□□□ -1.15
HERC4-209ENST00000473533 C8orf34Q49A92 452 aa7.87□□□□□ -1.15
HERC4-209ENST00000473533 PLEKHH1Q9ULM0 1364 aa7.87□□□□□ -1.15
HERC4-209ENST00000473533 TET3O43151 1660 aa7.87□□□□□ -1.15
HERC4-209ENST00000473533 MYOM2P54296 1465 aa7.86□□□□□ -1.15
HERC4-209ENST00000473533 ABCC1P33527 1531 aa7.86□□□□□ -1.15
HERC4-209ENST00000473533 CENPJQ9HC77 1338 aaPredicted RBP7.86□□□□□ -1.15
HERC4-209ENST00000473533 SBNO2Q9Y2G9 1366 aa7.86□□□□□ -1.15
HERC4-209ENST00000473533 POLR3AO14802 1390 aaPredicted RBP7.85□□□□□ -1.15
HERC4-209ENST00000473533 FAM43AQ8N2R8 423 aa7.85□□□□□ -1.15
HERC4-209ENST00000473533 DEPDC5O75140 1603 aa7.84□□□□□ -1.15
HERC4-209ENST00000473533 UHRF1BP1LA0JNW5 1464 aa7.84□□□□□ -1.15
HERC4-209ENST00000473533 CLUAP1Q96AJ1 413 aa7.84□□□□□ -1.15
HERC4-209ENST00000473533 RSPH6AQ9H0K4 717 aa7.84□□□□□ -1.15
HERC4-209ENST00000473533 SPAG9O60271 1321 aaKnown RBP7.84□□□□□ -1.15
HERC4-209ENST00000473533 MYOM1P52179 1685 aa7.84□□□□□ -1.15
HERC4-209ENST00000473533 CT47B1P0C2W7 299 aaPredicted RBP7.84□□□□□ -1.16
HERC4-209ENST00000473533 RGS3P49796 1198 aa7.84□□□□□ -1.16
HERC4-209ENST00000473533 C20orf194Q5TEA3 1177 aa7.84□□□□□ -1.16
HERC4-209ENST00000473533 CFAP53Q96M91 514 aa7.84□□□□□ -1.16
HERC4-209ENST00000473533 EIF5BO60841 1220 aaKnown RBP7.83□□□□□ -1.16
HERC4-209ENST00000473533 IL27Q8NEV9 243 aa7.83□□□□□ -1.16
HERC4-209ENST00000473533 MYO3AQ8NEV4 1616 aa7.83□□□□□ -1.16
HERC4-209ENST00000473533 WDR63Q8IWG1 891 aa7.82□□□□□ -1.16
HERC4-209ENST00000473533 FRAT1Q92837 279 aaPredicted RBP7.82□□□□□ -1.16
HERC4-209ENST00000473533 RWDD1Q9H446 243 aaPredicted RBP7.82□□□□□ -1.16
HERC4-209ENST00000473533 MAP3K4Q9Y6R4 1608 aa7.82□□□□□ -1.16
HERC4-209ENST00000473533 APAF1O14727 1248 aa7.82□□□□□ -1.16
HERC4-209ENST00000473533 CLTCL1P53675 1640 aa7.82□□□□□ -1.16
HERC4-209ENST00000473533 PUS7Q96PZ0 661 aaKnown RBP7.81□□□□□ -1.16
HERC4-209ENST00000473533 MYH16Q9H6N6 1097 aa7.81□□□□□ -1.16
HERC4-209ENST00000473533 SETBP1Q9Y6X0 1596 aa7.81□□□□□ -1.16
HERC4-209ENST00000473533 NSD2O96028 1365 aa7.81□□□□□ -1.16
HERC4-209ENST00000473533 PTMSP20962 102 aa7.81□□□□□ -1.16
HERC4-209ENST00000473533 RUNDC1Q96C34 613 aa7.81□□□□□ -1.16
HERC4-209ENST00000473533 USP32Q8NFA0 1604 aa7.81□□□□□ -1.16
HERC4-209ENST00000473533 CCDC27Q2M243 656 aa7.81□□□□□ -1.16
HERC4-209ENST00000473533 VWDEQ8N2E2 1590 aa7.81□□□□□ -1.16
HERC4-209ENST00000473533 ZFYVE16Q7Z3T8 1539 aa7.81□□□□□ -1.16
HERC4-209ENST00000473533 KIF1BO60333 1816 aa7.81□□□□□ -1.16
HERC4-209ENST00000473533 ISY1Q9ULR0 285 aaKnown RBP7.8□□□□□ -1.16
HERC4-209ENST00000473533 ADGRL1O94910 1474 aa7.8□□□□□ -1.16
HERC4-209ENST00000473533 ERVK-7P63135 1459 aa7.79□□□□□ -1.16
HERC4-209ENST00000473533 CHMP4BQ9H444 224 aaKnown RBP7.79□□□□□ -1.16
HERC4-209ENST00000473533 ZCCHC11Q5TAX3 1644 aaKnown RBP7.78□□□□□ -1.16
HERC4-209ENST00000473533 ATP7AQ04656 1500 aa7.78□□□□□ -1.16
HERC4-209ENST00000473533 FRAT2O75474 233 aaPredicted RBP7.78□□□□□ -1.16
HERC4-209ENST00000473533 MORC1Q86VD1 984 aa7.78□□□□□ -1.16
HERC4-209ENST00000473533 WWC1Q8IX03 1113 aa7.78□□□□□ -1.16
HERC4-209ENST00000473533 CHD1O14646 1710 aa7.78□□□□□ -1.16
HERC4-209ENST00000473533 FANCAO15360 1455 aa7.78□□□□□ -1.16
HERC4-209ENST00000473533 CCDC146Q8IYE0 955 aa7.78□□□□□ -1.16
HERC4-209ENST00000473533 PNNQ9H307 717 aaKnown RBP7.78□□□□□ -1.16
HERC4-209ENST00000473533 INO80Q9ULG1 1556 aaPredicted RBP7.78□□□□□ -1.16
HERC4-209ENST00000473533 ABCA6Q8N139 1617 aa7.77□□□□□ -1.17
HERC4-209ENST00000473533 RPGRIP1LQ68CZ1 1315 aa7.77□□□□□ -1.17
HERC4-209ENST00000473533 NRXN1Q9ULB1 1477 aa7.77□□□□□ -1.17
HERC4-209ENST00000473533 SLC4A3P48751 1232 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms