RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 FAM13BQ9NYF5 915 aa5.47□□□□□ -1.53
VPS50-210ENST00000471188 ZHX1Q9UKY1 873 aaPredicted RBP5.47□□□□□ -1.53
VPS50-210ENST00000471188 PHF8Q9UPP1 1060 aa5.47□□□□□ -1.53
VPS50-210ENST00000471188 ESPNB1AK53 854 aa5.46□□□□□ -1.54
VPS50-210ENST00000471188 TPM2P07951 284 aa5.46□□□□□ -1.54
VPS50-210ENST00000471188 PDCD7Q8N8D1 485 aaKnown RBP5.46□□□□□ -1.54
VPS50-210ENST00000471188 FAM161AQ3B820 660 aa5.45□□□□□ -1.54
VPS50-210ENST00000471188 CDAN1Q8IWY9 1227 aa5.45□□□□□ -1.54
VPS50-210ENST00000471188 PRDM4Q9UKN5 801 aa5.45□□□□□ -1.54
VPS50-210ENST00000471188 KIAA1211Q6ZU35 1233 aa5.45□□□□□ -1.54
VPS50-210ENST00000471188 SPRYD3Q8NCJ5 442 aa5.45□□□□□ -1.54
VPS50-210ENST00000471188 FHAD1B1AJZ9 1412 aa5.45□□□□□ -1.54
VPS50-210ENST00000471188 BECN1Q14457 450 aa5.45□□□□□ -1.54
VPS50-210ENST00000471188 TMEM121BQ9BXQ6 578 aaPredicted RBP5.45□□□□□ -1.54
VPS50-210ENST00000471188 PRDM10Q9NQV6 1147 aa5.45□□□□□ -1.54
VPS50-210ENST00000471188 CRBNQ96SW2 442 aa5.44□□□□□ -1.54
VPS50-210ENST00000471188 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.44□□□□□ -1.54
VPS50-210ENST00000471188 ARAP1Q96P48 1450 aa5.44□□□□□ -1.54
VPS50-210ENST00000471188 AMER1Q5JTC6 1135 aaPredicted RBP5.44□□□□□ -1.54
VPS50-210ENST00000471188 ADAMTS12P58397 1594 aa5.43□□□□□ -1.54
VPS50-210ENST00000471188 CCDC7Q96M83 1385 aa5.43□□□□□ -1.54
VPS50-210ENST00000471188 CANXP27824 592 aaKnown RBP5.43□□□□□ -1.54
VPS50-210ENST00000471188 CHMP4BQ9H444 224 aaKnown RBP5.43□□□□□ -1.54
VPS50-210ENST00000471188 LCE2DQ5TA82 110 aaPredicted RBP5.43□□□□□ -1.54
VPS50-210ENST00000471188 TAOK2Q9UL54 1235 aa5.42□□□□□ -1.54
VPS50-210ENST00000471188 NAP1L2Q9ULW6 460 aaPredicted RBP5.42□□□□□ -1.54
VPS50-210ENST00000471188 PPRC1Q5VV67 1664 aaKnown RBP5.42□□□□□ -1.54
VPS50-210ENST00000471188 CENPJQ9HC77 1338 aaPredicted RBP5.42□□□□□ -1.54
VPS50-210ENST00000471188 MRE11P49959 708 aa5.42□□□□□ -1.54
VPS50-210ENST00000471188 L3MBTL3Q96JM7 780 aaPredicted RBP5.42□□□□□ -1.54
VPS50-210ENST00000471188 MAGI1Q96QZ7 1491 aaPredicted RBP5.41□□□□□ -1.54
VPS50-210ENST00000471188 TNNT2P45379 298 aaPredicted RBP5.41□□□□□ -1.54
VPS50-210ENST00000471188 C8orf34Q49A92 452 aa5.41□□□□□ -1.54
VPS50-210ENST00000471188 BOLA1Q9Y3E2 137 aa5.41□□□□□ -1.54
VPS50-210ENST00000471188 ZNF608Q9ULD9 1512 aaPredicted RBP5.41□□□□□ -1.54
VPS50-210ENST00000471188 ERBB4Q15303 1308 aa5.41□□□□□ -1.54
VPS50-210ENST00000471188 KTN1Q86UP2 1357 aaKnown RBP5.41□□□□□ -1.54
VPS50-210ENST00000471188 PHLDB1Q86UU1 1377 aa5.41□□□□□ -1.54
VPS50-210ENST00000471188 KIF7Q2M1P5 1343 aa5.41□□□□□ -1.54
VPS50-210ENST00000471188 MSNP26038 577 aaKnown RBP5.4□□□□□ -1.54
VPS50-210ENST00000471188 GRPEL1Q9HAV7 217 aa5.4□□□□□ -1.54
VPS50-210ENST00000471188 R3HCC1Q9Y3T6 440 aaKnown RBP5.4□□□□□ -1.54
VPS50-210ENST00000471188 CUX1P39880 1505 aa5.4□□□□□ -1.54
VPS50-210ENST00000471188 NCLP19338 710 aaKnown RBP5.4□□□□□ -1.55
VPS50-210ENST00000471188 ZNF326Q5BKZ1 582 aaKnown RBP5.4□□□□□ -1.55
VPS50-210ENST00000471188 PNISRQ8TF01 805 aaKnown RBP5.4□□□□□ -1.55
VPS50-210ENST00000471188 MARVELD3Q96A59 401 aa5.4□□□□□ -1.55
VPS50-210ENST00000471188 CDCA7LQ96GN5 454 aa5.4□□□□□ -1.55
VPS50-210ENST00000471188 POLA1P09884 1462 aaPredicted RBP5.4□□□□□ -1.55
VPS50-210ENST00000471188 TRAK2O60296 914 aa5.4□□□□□ -1.55
VPS50-210ENST00000471188 P3H3Q8IVL6 736 aa5.4□□□□□ -1.55
VPS50-210ENST00000471188 ANP32BQ92688 251 aaKnown RBP5.4□□□□□ -1.55
VPS50-210ENST00000471188 SYNJ1O43426 1573 aa5.39□□□□□ -1.55
VPS50-210ENST00000471188 CENPQQ7L2Z9 268 aaPredicted RBP5.39□□□□□ -1.55
VPS50-210ENST00000471188 MAP7D2Q96T17 732 aa5.39□□□□□ -1.55
VPS50-210ENST00000471188 ABCA10Q8WWZ4 1543 aa5.39□□□□□ -1.55
VPS50-210ENST00000471188 TOP2BQ02880 1626 aa5.39□□□□□ -1.55
VPS50-210ENST00000471188 L3MBTL2Q969R5 705 aa5.39□□□□□ -1.55
VPS50-210ENST00000471188 UPF2Q9HAU5 1272 aaKnown RBP5.39□□□□□ -1.55
VPS50-210ENST00000471188 NCOA2Q15596 1464 aa5.38□□□□□ -1.55
VPS50-210ENST00000471188 FSD2A1L4K1 749 aa5.38□□□□□ -1.55
VPS50-210ENST00000471188 MCM4P33991 863 aa5.38□□□□□ -1.55
VPS50-210ENST00000471188 C20orf194Q5TEA3 1177 aa5.38□□□□□ -1.55
VPS50-210ENST00000471188 PAXIP1Q6ZW49 1069 aaPredicted RBP5.38□□□□□ -1.55
VPS50-210ENST00000471188 GTF2E1P29083 439 aaPredicted RBP5.38□□□□□ -1.55
VPS50-210ENST00000471188 TAF7LQ5H9L4 462 aa5.38□□□□□ -1.55
VPS50-210ENST00000471188 SMAP1Q8IYB5 467 aaPredicted RBP5.38□□□□□ -1.55
VPS50-210ENST00000471188 MS4A4AQ96JQ5 239 aa5.38□□□□□ -1.55
VPS50-210ENST00000471188 CEP170Q5SW79 1584 aa5.38□□□□□ -1.55
VPS50-210ENST00000471188 VGLL3A8MV65 326 aa5.38□□□□□ -1.55
VPS50-210ENST00000471188 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.38□□□□□ -1.55
VPS50-210ENST00000471188 NCOA1Q15788 1441 aa5.37□□□□□ -1.55
VPS50-210ENST00000471188 CCDC18Q5T9S5 1454 aa5.37□□□□□ -1.55
VPS50-210ENST00000471188 ZBTB7CA1YPR0 619 aa5.37□□□□□ -1.55
VPS50-210ENST00000471188 CDK11BP21127 795 aaKnown RBP5.37□□□□□ -1.55
VPS50-210ENST00000471188 MFRPQ9BY79 579 aa5.37□□□□□ -1.55
VPS50-210ENST00000471188 NLRP6P59044 892 aa5.37□□□□□ -1.55
VPS50-210ENST00000471188 STAC3Q96MF2 364 aa5.37□□□□□ -1.55
VPS50-210ENST00000471188 ERICH3Q5RHP9 1530 aa5.37□□□□□ -1.55
VPS50-210ENST00000471188 UQCRHLA0A096LP55 91 aa5.36□□□□□ -1.55
VPS50-210ENST00000471188 SOX12O15370 315 aa5.36□□□□□ -1.55
VPS50-210ENST00000471188 UQCRHP07919 91 aa5.36□□□□□ -1.55
VPS50-210ENST00000471188 RIPK4P57078 832 aa5.36□□□□□ -1.55
VPS50-210ENST00000471188 RRP7BPQ9NSQ0 103 aa5.36□□□□□ -1.55
VPS50-210ENST00000471188 CHIC2Q9UKJ5 165 aa5.36□□□□□ -1.55
VPS50-210ENST00000471188 NUP160Q12769 1436 aa5.36□□□□□ -1.55
VPS50-210ENST00000471188 MAP3K1Q13233 1512 aa5.36□□□□□ -1.55
VPS50-210ENST00000471188 MICALL2Q8IY33 904 aa5.36□□□□□ -1.55
VPS50-210ENST00000471188 ST18O60284 1047 aa5.36□□□□□ -1.55
VPS50-210ENST00000471188 UACAQ9BZF9 1416 aa5.35□□□□□ -1.55
VPS50-210ENST00000471188 PDE3BQ13370 1112 aa5.35□□□□□ -1.55
VPS50-210ENST00000471188 OFD1O75665 1012 aa5.35□□□□□ -1.55
VPS50-210ENST00000471188 ZSCAN30Q86W11 494 aa5.35□□□□□ -1.55
VPS50-210ENST00000471188 PPP4R3BQ5MIZ7 849 aa5.35□□□□□ -1.55
VPS50-210ENST00000471188 GLI2P10070 1586 aa5.35□□□□□ -1.55
VPS50-210ENST00000471188 PPP1R37O75864 691 aa5.34□□□□□ -1.55
VPS50-210ENST00000471188 NBPF8Q3BBV2 869 aa5.34□□□□□ -1.55
VPS50-210ENST00000471188 MTERF4Q7Z6M4 381 aaKnown RBP5.34□□□□□ -1.55
VPS50-210ENST00000471188 TBC1D2Q9BYX2 928 aa5.34□□□□□ -1.55
VPS50-210ENST00000471188 LRRC9Q6ZRR7 1453 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms