RNA–Protein interactions for RNA: ENST00000470953.1

VARS-222, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 392 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-222ENST00000470953 CDK11AQ9UQ88 783 aaPredicted RBP9.89□□□□□ -0.83
VARS-222ENST00000470953 WASHC2CQ9Y4E1 1318 aa9.88□□□□□ -0.83
VARS-222ENST00000470953 FNBP4Q8N3X1 1017 aaPredicted RBP9.88□□□□□ -0.83
VARS-222ENST00000470953 ZNF777Q9ULD5 760 aaPredicted RBP9.88□□□□□ -0.83
VARS-222ENST00000470953 CDC42BPAQ5VT25 1732 aa9.87□□□□□ -0.83
VARS-222ENST00000470953 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.87□□□□□ -0.83
VARS-222ENST00000470953 TET3O43151 1660 aa9.87□□□□□ -0.83
VARS-222ENST00000470953 EID1Q9Y6B2 187 aa9.87□□□□□ -0.83
VARS-222ENST00000470953 CLIP1P30622 1438 aa9.87□□□□□ -0.83
VARS-222ENST00000470953 NINLQ9Y2I6 1382 aa9.87□□□□□ -0.83
VARS-222ENST00000470953 ASXL1Q8IXJ9 1541 aa9.87□□□□□ -0.83
VARS-222ENST00000470953 ERVK-7P63135 1459 aa9.86□□□□□ -0.83
VARS-222ENST00000470953 CAMSAP2Q08AD1 1489 aa9.86□□□□□ -0.83
VARS-222ENST00000470953 BAG6P46379 1132 aa9.86□□□□□ -0.83
VARS-222ENST00000470953 GPATCH8Q9UKJ3 1502 aaKnown RBP9.86□□□□□ -0.83
VARS-222ENST00000470953 SPHKAPQ2M3C7 1700 aa9.85□□□□□ -0.83
VARS-222ENST00000470953 LRRIQ1Q96JM4 1722 aa9.85□□□□□ -0.83
VARS-222ENST00000470953 EN1Q05925 392 aaPredicted RBP9.85□□□□□ -0.83
VARS-222ENST00000470953 LRRC59Q96AG4 307 aaKnown RBP9.85□□□□□ -0.83
VARS-222ENST00000470953 PPP1R1BQ9UD71 204 aaPredicted RBP9.85□□□□□ -0.83
VARS-222ENST00000470953 MROH1Q8NDA8 1641 aa9.85□□□□□ -0.83
VARS-222ENST00000470953 KIF3BO15066 747 aa9.84□□□□□ -0.83
VARS-222ENST00000470953 DDX17Q92841 729 aaKnown RBP9.84□□□□□ -0.83
VARS-222ENST00000470953 GJD4Q96KN9 370 aaPredicted RBP9.84□□□□□ -0.83
VARS-222ENST00000470953 GLI3P10071 1580 aa9.84□□□□□ -0.83
VARS-222ENST00000470953 PRELPP51888 382 aa9.83□□□□□ -0.84
VARS-222ENST00000470953 CADPS2Q86UW7 1296 aa9.83□□□□□ -0.84
VARS-222ENST00000470953 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.83□□□□□ -0.84
VARS-222ENST00000470953 CHD4Q14839 1912 aa9.83□□□□□ -0.84
VARS-222ENST00000470953 C14orf37Q86TY3 774 aa9.82□□□□□ -0.84
VARS-222ENST00000470953 DHX29Q7Z478 1369 aaKnown RBP9.82□□□□□ -0.84
VARS-222ENST00000470953 RALGAPBQ86X10 1494 aa9.82□□□□□ -0.84
VARS-222ENST00000470953 TMEM2Q9UHN6 1383 aa9.81□□□□□ -0.84
VARS-222ENST00000470953 ATF3P18847 181 aa9.81□□□□□ -0.84
VARS-222ENST00000470953 CHD2O14647 1828 aaKnown RBP9.81□□□□□ -0.84
VARS-222ENST00000470953 FMN1Q68DA7 1419 aa9.81□□□□□ -0.84
VARS-222ENST00000470953 ARHGAP35Q9NRY4 1499 aa9.8□□□□□ -0.84
VARS-222ENST00000470953 COL13A1Q5TAT6 717 aaPredicted RBP9.8□□□□□ -0.84
VARS-222ENST00000470953 PTCH1Q13635 1447 aa9.8□□□□□ -0.84
VARS-222ENST00000470953 CFAP65Q6ZU64 1925 aaKnown RBP9.79□□□□□ -0.84
VARS-222ENST00000470953 NCOA3Q9Y6Q9 1424 aa9.79□□□□□ -0.84
VARS-222ENST00000470953 PIK3C2BO00750 1634 aa9.78□□□□□ -0.84
VARS-222ENST00000470953 C19orf44Q9H6X5 657 aa9.78□□□□□ -0.84
VARS-222ENST00000470953 EZH2Q15910 746 aaKnown RBP9.77□□□□□ -0.85
VARS-222ENST00000470953 SEPT12Q8IYM1 358 aa9.77□□□□□ -0.85
VARS-222ENST00000470953 KIAA1107Q9UPP5 1409 aa9.76□□□□□ -0.85
VARS-222ENST00000470953 SPON1Q9HCB6 807 aa9.76□□□□□ -0.85
VARS-222ENST00000470953 ZNF644Q9H582 1327 aaPredicted RBP9.76□□□□□ -0.85
VARS-222ENST00000470953 RGPD1P0DJD0 1748 aa9.76□□□□□ -0.85
VARS-222ENST00000470953 HSPA6P17066 643 aa9.75□□□□□ -0.85
VARS-222ENST00000470953 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.75□□□□□ -0.85
VARS-222ENST00000470953 KCNQ2O43526 872 aa9.74□□□□□ -0.85
VARS-222ENST00000470953 KRT27Q7Z3Y8 459 aa9.74□□□□□ -0.85
VARS-222ENST00000470953 TNS4Q8IZW8 715 aa9.74□□□□□ -0.85
VARS-222ENST00000470953 MST1RQ04912 1400 aa9.73□□□□□ -0.85
VARS-222ENST00000470953 SHANK3Q9BYB0 1731 aa9.73□□□□□ -0.85
VARS-222ENST00000470953 TNS1Q9HBL0 1735 aaKnown RBP9.73□□□□□ -0.85
VARS-222ENST00000470953 BCANQ96GW7 911 aa9.73□□□□□ -0.85
VARS-222ENST00000470953 CFDP1Q9UEE9 299 aaPredicted RBP9.73□□□□□ -0.85
VARS-222ENST00000470953 MARF1Q9Y4F3 1742 aaKnown RBP9.73□□□□□ -0.85
VARS-222ENST00000470953 DISP2A7MBM2 1401 aa9.73□□□□□ -0.85
VARS-222ENST00000470953 PLEKHH2Q8IVE3 1493 aa9.72□□□□□ -0.85
VARS-222ENST00000470953 NRKQ7Z2Y5 1582 aa9.72□□□□□ -0.85
VARS-222ENST00000470953 EFCAB6Q5THR3 1501 aa9.72□□□□□ -0.85
VARS-222ENST00000470953 COL22A1Q8NFW1 1626 aaPredicted RBP9.71□□□□□ -0.85
VARS-222ENST00000470953 MBD5Q9P267 1494 aa9.71□□□□□ -0.86
VARS-222ENST00000470953 CEP152O94986 1710 aa9.7□□□□□ -0.86
VARS-222ENST00000470953 MYOM2P54296 1465 aa9.7□□□□□ -0.86
VARS-222ENST00000470953 MYOM1P52179 1685 aa9.7□□□□□ -0.86
VARS-222ENST00000470953 NUP188Q5SRE5 1749 aa9.69□□□□□ -0.86
VARS-222ENST00000470953 UNC5CLQ8IV45 518 aa9.69□□□□□ -0.86
VARS-222ENST00000470953 CAMKK2Q96RR4 588 aa9.69□□□□□ -0.86
VARS-222ENST00000470953 STAG3Q9UJ98 1225 aa9.69□□□□□ -0.86
VARS-222ENST00000470953 RREB1Q92766 1687 aa9.68□□□□□ -0.86
VARS-222ENST00000470953 DCCP43146 1447 aa9.68□□□□□ -0.86
VARS-222ENST00000470953 FAM182BQ5T319 152 aa9.68□□□□□ -0.86
VARS-222ENST00000470953 UBTFP17480 764 aaKnown RBP9.67□□□□□ -0.86
VARS-222ENST00000470953 SLIT2O94813 1529 aa9.66□□□□□ -0.86
VARS-222ENST00000470953 CCDC18Q5T9S5 1454 aa9.66□□□□□ -0.86
VARS-222ENST00000470953 CASKIN1Q8WXD9 1431 aa9.66□□□□□ -0.86
VARS-222ENST00000470953 CCNB3Q8WWL7 1395 aa9.66□□□□□ -0.86
VARS-222ENST00000470953 PPP1R15AO75807 674 aaPredicted RBP9.66□□□□□ -0.86
VARS-222ENST00000470953 LAMC1P11047 1609 aa9.66□□□□□ -0.86
VARS-222ENST00000470953 SOS2Q07890 1332 aaPredicted RBP9.65□□□□□ -0.86
VARS-222ENST00000470953 ONECUT3O60422 494 aaPredicted RBP9.65□□□□□ -0.86
VARS-222ENST00000470953 EEA1Q15075 1411 aa9.65□□□□□ -0.87
VARS-222ENST00000470953 FAM83GA6ND36 823 aa9.64□□□□□ -0.87
VARS-222ENST00000470953 SYT17Q9BSW7 474 aa9.64□□□□□ -0.87
VARS-222ENST00000470953 ADGRB3O60242 1522 aa9.64□□□□□ -0.87
VARS-222ENST00000470953 PLEKHG1Q9ULL1 1385 aa9.63□□□□□ -0.87
VARS-222ENST00000470953 ADGRB2O60241 1585 aa9.63□□□□□ -0.87
VARS-222ENST00000470953 DNAJC5GQ8N7S2 189 aa9.63□□□□□ -0.87
VARS-222ENST00000470953 A0A0G2JS52 829 aa9.62□□□□□ -0.87
VARS-222ENST00000470953 MYT1Q01538 1121 aa9.62□□□□□ -0.87
VARS-222ENST00000470953 IDI1Q13907 227 aa9.62□□□□□ -0.87
VARS-222ENST00000470953 FHDC1Q9C0D6 1143 aaPredicted RBP9.62□□□□□ -0.87
VARS-222ENST00000470953 TRPM2O94759 1503 aa9.61□□□□□ -0.87
VARS-222ENST00000470953 VPS72Q15906 364 aa9.61□□□□□ -0.87
VARS-222ENST00000470953 NBPF8Q3BBV2 869 aa9.61□□□□□ -0.87
VARS-222ENST00000470953 NBPF14Q5TI25 921 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms