RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 IQGAP3Q86VI3 1631 aa32.37■■■□□ 2.77
COL9A3-207ENST00000467819 ITGAEP38570 1179 aa32.35■■■□□ 2.77
COL9A3-207ENST00000467819 BCANQ96GW7 911 aa32.35■■■□□ 2.77
COL9A3-207ENST00000467819 KCNA6P17658 529 aa32.34■■■□□ 2.77
COL9A3-207ENST00000467819 ZFYVE9O95405 1425 aa32.33■■■□□ 2.77
COL9A3-207ENST00000467819 TMEM94Q12767 1356 aa32.32■■■□□ 2.77
COL9A3-207ENST00000467819 NWD1Q149M9 1564 aa32.32■■■□□ 2.76
COL9A3-207ENST00000467819 RIMS2Q9UQ26 1411 aa32.31■■■□□ 2.76
COL9A3-207ENST00000467819 PPP1R15AO75807 674 aaPredicted RBP32.28■■■□□ 2.76
COL9A3-207ENST00000467819 CHGAP10645 457 aaKnown RBP32.28■■■□□ 2.76
COL9A3-207ENST00000467819 PROSER2Q86WR7 435 aaPredicted RBP32.28■■■□□ 2.76
COL9A3-207ENST00000467819 NKTRP30414 1462 aaKnown RBP32.28■■■□□ 2.76
COL9A3-207ENST00000467819 RBM33Q96EV2 1170 aaKnown RBP32.27■■■□□ 2.76
COL9A3-207ENST00000467819 CHD2O14647 1828 aaKnown RBP32.27■■■□□ 2.76
COL9A3-207ENST00000467819 PLEKHG1Q9ULL1 1385 aa32.26■■■□□ 2.75
COL9A3-207ENST00000467819 NUP155O75694 1391 aa32.24■■■□□ 2.75
COL9A3-207ENST00000467819 PHF23Q9BUL5 403 aaPredicted RBP32.24■■■□□ 2.75
COL9A3-207ENST00000467819 HDGFP51858 240 aaKnown RBP32.22■■■□□ 2.75
COL9A3-207ENST00000467819 ROBO1Q9Y6N7 1651 aa32.21■■■□□ 2.75
COL9A3-207ENST00000467819 FAM135BQ49AJ0 1406 aa32.19■■■□□ 2.74
COL9A3-207ENST00000467819 NUTM2DQ5VT03 806 aaPredicted RBP32.17■■■□□ 2.74
COL9A3-207ENST00000467819 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.16■■■□□ 2.74
COL9A3-207ENST00000467819 SPHKAPQ2M3C7 1700 aa32.16■■■□□ 2.74
COL9A3-207ENST00000467819 MSH6P52701 1360 aa32.15■■■□□ 2.74
COL9A3-207ENST00000467819 DIP2AQ14689 1571 aa32.11■■■□□ 2.73
COL9A3-207ENST00000467819 TBX22Q9Y458 520 aa32.11■■■□□ 2.73
COL9A3-207ENST00000467819 ADAMTS13Q76LX8 1427 aa32.1■■■□□ 2.73
COL9A3-207ENST00000467819 RRBP1Q9P2E9 1410 aaKnown RBP32.05■■■□□ 2.72
COL9A3-207ENST00000467819 PHLPP1O60346 1717 aa32.04■■■□□ 2.72
COL9A3-207ENST00000467819 TRPM2O94759 1503 aa32.03■■■□□ 2.72
COL9A3-207ENST00000467819 SLAIN2Q9P270 581 aa32.01■■■□□ 2.71
COL9A3-207ENST00000467819 PIK3R4Q99570 1358 aa32■■■□□ 2.71
COL9A3-207ENST00000467819 C14orf37Q86TY3 774 aa32■■■□□ 2.71
COL9A3-207ENST00000467819 SIPA1L2Q9P2F8 1722 aaPredicted RBP32■■■□□ 2.71
COL9A3-207ENST00000467819 NRXN3Q9Y4C0 1643 aa31.99■■■□□ 2.71
COL9A3-207ENST00000467819 CLTCL1P53675 1640 aa31.98■■■□□ 2.71
COL9A3-207ENST00000467819 NCOA3Q9Y6Q9 1424 aa31.98■■■□□ 2.71
COL9A3-207ENST00000467819 NAIPQ13075 1403 aa31.97■■■□□ 2.71
COL9A3-207ENST00000467819 ZNF326Q5BKZ1 582 aaKnown RBP31.96■■■□□ 2.71
COL9A3-207ENST00000467819 PTPRUQ92729 1446 aa31.94■■■□□ 2.7
COL9A3-207ENST00000467819 KIF1BO60333 1816 aa31.94■■■□□ 2.7
COL9A3-207ENST00000467819 RGS17Q9UGC6 210 aaPredicted RBP31.94■■■□□ 2.7
COL9A3-207ENST00000467819 SETBP1Q9Y6X0 1596 aa31.94■■■□□ 2.7
COL9A3-207ENST00000467819 AMOTL2Q9Y2J4 779 aa31.92■■■□□ 2.7
COL9A3-207ENST00000467819 XRN1Q8IZH2 1706 aaKnown RBP31.91■■■□□ 2.7
COL9A3-207ENST00000467819 COL16A1Q07092 1604 aaPredicted RBP31.89■■■□□ 2.7
COL9A3-207ENST00000467819 NEXMIFQ5QGS0 1516 aa31.88■■■□□ 2.69
COL9A3-207ENST00000467819 ATF3P18847 181 aa31.87■■■□□ 2.69
COL9A3-207ENST00000467819 CADPS2Q86UW7 1296 aa31.87■■■□□ 2.69
COL9A3-207ENST00000467819 C19orf44Q9H6X5 657 aa31.87■■■□□ 2.69
COL9A3-207ENST00000467819 JCADQ9P266 1359 aa31.84■■■□□ 2.69
COL9A3-207ENST00000467819 TRIM52Q96A61 297 aa31.83■■■□□ 2.69
COL9A3-207ENST00000467819 HFM1A2PYH4 1435 aa31.83■■■□□ 2.69
COL9A3-207ENST00000467819 AHDC1Q5TGY3 1603 aaPredicted RBP31.81■■■□□ 2.68
COL9A3-207ENST00000467819 METP08581 1390 aa31.81■■■□□ 2.68
COL9A3-207ENST00000467819 POTEAQ6S8J7 498 aa31.78■■■□□ 2.68
COL9A3-207ENST00000467819 DCCP43146 1447 aa31.75■■■□□ 2.67
COL9A3-207ENST00000467819 SHPRHQ149N8 1683 aa31.74■■■□□ 2.67
COL9A3-207ENST00000467819 NALCNQ8IZF0 1738 aa31.73■■■□□ 2.67
COL9A3-207ENST00000467819 SLC4A1APQ9BWU0 796 aaKnown RBP31.73■■■□□ 2.67
COL9A3-207ENST00000467819 BRINP3Q76B58 766 aa31.72■■■□□ 2.67
COL9A3-207ENST00000467819 SETD1AO15047 1707 aaKnown RBP31.72■■■□□ 2.67
COL9A3-207ENST00000467819 LRP6O75581 1613 aa31.7■■■□□ 2.66
COL9A3-207ENST00000467819 ASXL1Q8IXJ9 1541 aa31.7■■■□□ 2.66
COL9A3-207ENST00000467819 PPLO60437 1756 aa31.69■■■□□ 2.66
COL9A3-207ENST00000467819 MST1RQ04912 1400 aa31.68■■■□□ 2.66
COL9A3-207ENST00000467819 ADGRL3Q9HAR2 1447 aa31.67■■■□□ 2.66
COL9A3-207ENST00000467819 SPATA31A6Q5VVP1 1343 aa31.67■■■□□ 2.66
COL9A3-207ENST00000467819 NHSL1Q5SYE7 1610 aa31.66■■■□□ 2.66
COL9A3-207ENST00000467819 VGFO15240 615 aaPredicted RBP31.64■■■□□ 2.66
COL9A3-207ENST00000467819 MEX3CQ5U5Q3 659 aaKnown RBP31.64■■■□□ 2.66
COL9A3-207ENST00000467819 FOXD1Q16676 465 aa31.61■■■□□ 2.65
COL9A3-207ENST00000467819 RPGRIP1LQ68CZ1 1315 aa31.59■■■□□ 2.65
COL9A3-207ENST00000467819 PTCH1Q13635 1447 aa31.58■■■□□ 2.65
COL9A3-207ENST00000467819 ROBO2Q9HCK4 1378 aa31.55■■■□□ 2.64
COL9A3-207ENST00000467819 NUTM2BA6NNL0 878 aaPredicted RBP31.54■■■□□ 2.64
COL9A3-207ENST00000467819 NUTM2EB1AL46 878 aaPredicted RBP31.54■■■□□ 2.64
COL9A3-207ENST00000467819 NUTM2AQ8IVF1 878 aaPredicted RBP31.54■■■□□ 2.64
COL9A3-207ENST00000467819 SETD5Q9C0A6 1442 aa31.54■■■□□ 2.64
COL9A3-207ENST00000467819 DDX17Q92841 729 aaKnown RBP31.53■■■□□ 2.64
COL9A3-207ENST00000467819 CCDC144AA2RUR9 1427 aa31.51■■■□□ 2.64
COL9A3-207ENST00000467819 C1orf167Q5SNV9 1468 aa31.51■■■□□ 2.63
COL9A3-207ENST00000467819 IFT172Q9UG01 1749 aa31.5■■■□□ 2.63
COL9A3-207ENST00000467819 ZNF772Q68DY9 489 aaPredicted RBP31.49■■■□□ 2.63
COL9A3-207ENST00000467819 PRAG1Q86YV5 1406 aa31.49■■■□□ 2.63
COL9A3-207ENST00000467819 LRRC59Q96AG4 307 aaKnown RBP31.47■■■□□ 2.63
COL9A3-207ENST00000467819 MPHOSPH9Q99550 1183 aa31.46■■■□□ 2.63
COL9A3-207ENST00000467819 RGL3Q3MIN7 710 aa31.45■■■□□ 2.63
COL9A3-207ENST00000467819 LAMC1P11047 1609 aa31.44■■■□□ 2.62
COL9A3-207ENST00000467819 ADGRF5Q8IZF2 1346 aa31.44■■■□□ 2.62
COL9A3-207ENST00000467819 SPATA31E1Q6ZUB1 1445 aa31.43■■■□□ 2.62
COL9A3-207ENST00000467819 PNPLA6Q8IY17 1366 aa31.43■■■□□ 2.62
COL9A3-207ENST00000467819 ORAI2Q96SN7 254 aa31.4■■■□□ 2.62
COL9A3-207ENST00000467819 AFF2P51816 1311 aa31.39■■■□□ 2.62
COL9A3-207ENST00000467819 CDC42BPGQ6DT37 1551 aa31.38■■■□□ 2.61
COL9A3-207ENST00000467819 ANKRD30BQ9BXX2 1392 aa31.37■■■□□ 2.61
COL9A3-207ENST00000467819 KNDC1Q76NI1 1749 aa31.35■■■□□ 2.61
COL9A3-207ENST00000467819 STK26Q9P289 416 aa31.35■■■□□ 2.61
COL9A3-207ENST00000467819 RXRBP28702 533 aa31.34■■■□□ 2.61
COL9A3-207ENST00000467819 C8orf37Q96NL8 207 aa31.34■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 161.3 ms