RNA–Protein interactions for RNA: ENST00000465073.6

USP42-205, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 5

Gene USP42, Length 1,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-205ENST00000465073 PHF23Q9BUL5 403 aaPredicted RBP34.95■■■■□ 3.19
USP42-205ENST00000465073 ZFYVE9O95405 1425 aa34.94■■■■□ 3.18
USP42-205ENST00000465073 FAM135BQ49AJ0 1406 aa34.93■■■■□ 3.18
USP42-205ENST00000465073 GCC2Q8IWJ2 1684 aa34.93■■■■□ 3.18
USP42-205ENST00000465073 PLEKHG1Q9ULL1 1385 aa34.92■■■■□ 3.18
USP42-205ENST00000465073 RIMS2Q9UQ26 1411 aa34.92■■■■□ 3.18
USP42-205ENST00000465073 PPP1R15AO75807 674 aaPredicted RBP34.91■■■■□ 3.18
USP42-205ENST00000465073 NKTRP30414 1462 aaKnown RBP34.9■■■■□ 3.18
USP42-205ENST00000465073 TMEM131LA2VDJ0 1609 aa34.89■■■■□ 3.18
USP42-205ENST00000465073 ABCF1Q8NE71 845 aaKnown RBP eCLIP34.88■■■■□ 3.17
USP42-205ENST00000465073 RBM33Q96EV2 1170 aaKnown RBP34.88■■■■□ 3.17
USP42-205ENST00000465073 NWD1Q149M9 1564 aa34.88■■■■□ 3.17
USP42-205ENST00000465073 CHGAP10645 457 aaKnown RBP34.87■■■■□ 3.17
USP42-205ENST00000465073 ITGAEP38570 1179 aa34.87■■■■□ 3.17
USP42-205ENST00000465073 NUP155O75694 1391 aa34.86■■■■□ 3.17
USP42-205ENST00000465073 TBX22Q9Y458 520 aa34.84■■■■□ 3.17
USP42-205ENST00000465073 IQGAP3Q86VI3 1631 aa34.83■■■■□ 3.17
USP42-205ENST00000465073 E9PCH4 1651 aa34.83■■■■□ 3.17
USP42-205ENST00000465073 MYO5BQ9ULV0 1848 aa34.83■■■■□ 3.17
USP42-205ENST00000465073 MSH6P52701 1360 aa34.81■■■■□ 3.16
USP42-205ENST00000465073 PPARGC1BQ86YN6 1023 aaKnown RBP34.81■■■■□ 3.16
USP42-205ENST00000465073 NUTM2DQ5VT03 806 aaPredicted RBP34.74■■■■□ 3.15
USP42-205ENST00000465073 SLAIN2Q9P270 581 aa34.74■■■■□ 3.15
USP42-205ENST00000465073 CHD2O14647 1828 aaKnown RBP34.74■■■■□ 3.15
USP42-205ENST00000465073 ROBO1Q9Y6N7 1651 aa34.72■■■■□ 3.15
USP42-205ENST00000465073 ADAMTS13Q76LX8 1427 aa34.71■■■■□ 3.15
USP42-205ENST00000465073 NCOA3Q9Y6Q9 1424 aa34.7■■■■□ 3.15
USP42-205ENST00000465073 PIK3R4Q99570 1358 aa34.69■■■■□ 3.14
USP42-205ENST00000465073 DIP2AQ14689 1571 aa34.67■■■■□ 3.14
USP42-205ENST00000465073 RGS17Q9UGC6 210 aaPredicted RBP34.65■■■■□ 3.14
USP42-205ENST00000465073 C14orf37Q86TY3 774 aa34.63■■■■□ 3.13
USP42-205ENST00000465073 C19orf44Q9H6X5 657 aa34.58■■■■□ 3.13
USP42-205ENST00000465073 RRBP1Q9P2E9 1410 aaKnown RBP34.58■■■■□ 3.13
USP42-205ENST00000465073 AMOTL2Q9Y2J4 779 aa34.58■■■■□ 3.13
USP42-205ENST00000465073 TRPM2O94759 1503 aa34.57■■■■□ 3.13
USP42-205ENST00000465073 CADPS2Q86UW7 1296 aa34.57■■■■□ 3.12
USP42-205ENST00000465073 ATF3P18847 181 aa34.54■■■■□ 3.12
USP42-205ENST00000465073 ZNF326Q5BKZ1 582 aaKnown RBP34.54■■■■□ 3.12
USP42-205ENST00000465073 SPHKAPQ2M3C7 1700 aa34.53■■■■□ 3.12
USP42-205ENST00000465073 JCADQ9P266 1359 aa34.52■■■■□ 3.12
USP42-205ENST00000465073 PTPRUQ92729 1446 aa34.52■■■■□ 3.12
USP42-205ENST00000465073 PHLPP1O60346 1717 aa34.51■■■■□ 3.11
USP42-205ENST00000465073 NAIPQ13075 1403 aa34.49■■■■□ 3.11
USP42-205ENST00000465073 SETBP1Q9Y6X0 1596 aa34.48■■■■□ 3.11
USP42-205ENST00000465073 SIPA1L2Q9P2F8 1722 aaPredicted RBP34.46■■■■□ 3.11
USP42-205ENST00000465073 POTEAQ6S8J7 498 aa34.45■■■■□ 3.1
USP42-205ENST00000465073 NRXN3Q9Y4C0 1643 aa34.43■■■■□ 3.1
USP42-205ENST00000465073 COL16A1Q07092 1604 aaPredicted RBP34.41■■■■□ 3.1
USP42-205ENST00000465073 METP08581 1390 aa34.4■■■■□ 3.1
USP42-205ENST00000465073 DCCP43146 1447 aa34.39■■■■□ 3.1
USP42-205ENST00000465073 CLTCL1P53675 1640 aa34.39■■■■□ 3.1
USP42-205ENST00000465073 TRIM52Q96A61 297 aa34.38■■■■□ 3.09
USP42-205ENST00000465073 XRN1Q8IZH2 1706 aaKnown RBP34.37■■■■□ 3.09
USP42-205ENST00000465073 SPATA31A6Q5VVP1 1343 aa34.37■■■■□ 3.09
USP42-205ENST00000465073 AHDC1Q5TGY3 1603 aaPredicted RBP34.37■■■■□ 3.09
USP42-205ENST00000465073 HFM1A2PYH4 1435 aa34.36■■■■□ 3.09
USP42-205ENST00000465073 BRINP3Q76B58 766 aa34.36■■■■□ 3.09
USP42-205ENST00000465073 NEXMIFQ5QGS0 1516 aa34.36■■■■□ 3.09
USP42-205ENST00000465073 VGFO15240 615 aaPredicted RBP34.31■■■■□ 3.08
USP42-205ENST00000465073 SLC4A1APQ9BWU0 796 aaKnown RBP34.3■■■■□ 3.08
USP42-205ENST00000465073 KIF1BO60333 1816 aa34.28■■■■□ 3.08
USP42-205ENST00000465073 MST1RQ04912 1400 aa34.26■■■■□ 3.08
USP42-205ENST00000465073 MEX3CQ5U5Q3 659 aaKnown RBP34.26■■■■□ 3.07
USP42-205ENST00000465073 RPGRIP1LQ68CZ1 1315 aa34.25■■■■□ 3.07
USP42-205ENST00000465073 ADGRL3Q9HAR2 1447 aa34.25■■■■□ 3.07
USP42-205ENST00000465073 LRP6O75581 1613 aa34.24■■■■□ 3.07
USP42-205ENST00000465073 ASXL1Q8IXJ9 1541 aa34.23■■■■□ 3.07
USP42-205ENST00000465073 SHPRHQ149N8 1683 aa34.22■■■■□ 3.07
USP42-205ENST00000465073 ZNF772Q68DY9 489 aaPredicted RBP34.2■■■■□ 3.06
USP42-205ENST00000465073 SETD5Q9C0A6 1442 aa34.18■■■■□ 3.06
USP42-205ENST00000465073 LRRC59Q96AG4 307 aaKnown RBP34.15■■■■□ 3.06
USP42-205ENST00000465073 PTCH1Q13635 1447 aa34.15■■■■□ 3.06
USP42-205ENST00000465073 NUTM2BA6NNL0 878 aaPredicted RBP34.14■■■■□ 3.06
USP42-205ENST00000465073 NUTM2EB1AL46 878 aaPredicted RBP34.14■■■■□ 3.06
USP42-205ENST00000465073 NUTM2AQ8IVF1 878 aaPredicted RBP34.14■■■■□ 3.06
USP42-205ENST00000465073 ROBO2Q9HCK4 1378 aa34.11■■■■□ 3.05
USP42-205ENST00000465073 NALCNQ8IZF0 1738 aa34.11■■■■□ 3.05
USP42-205ENST00000465073 NHSL1Q5SYE7 1610 aa34.11■■■■□ 3.05
USP42-205ENST00000465073 PRAG1Q86YV5 1406 aa34.1■■■■□ 3.05
USP42-205ENST00000465073 FOXD1Q16676 465 aa34.09■■■■□ 3.05
USP42-205ENST00000465073 C1orf167Q5SNV9 1468 aa34.08■■■■□ 3.05
USP42-205ENST00000465073 SETD1AO15047 1707 aaKnown RBP34.08■■■■□ 3.05
USP42-205ENST00000465073 DDX17Q92841 729 aaKnown RBP34.07■■■■□ 3.05
USP42-205ENST00000465073 PPLO60437 1756 aa34.04■■■■□ 3.04
USP42-205ENST00000465073 CCDC144AA2RUR9 1427 aa34.03■■■■□ 3.04
USP42-205ENST00000465073 MPHOSPH9Q99550 1183 aa34.02■■■■□ 3.04
USP42-205ENST00000465073 PNPLA6Q8IY17 1366 aa34.02■■■■□ 3.04
USP42-205ENST00000465073 RXRBP28702 533 aa34.01■■■■□ 3.03
USP42-205ENST00000465073 AFF2P51816 1311 aa34■■■■□ 3.03
USP42-205ENST00000465073 ORAI2Q96SN7 254 aa33.99■■■■□ 3.03
USP42-205ENST00000465073 ADGRF5Q8IZF2 1346 aa33.99■■■■□ 3.03
USP42-205ENST00000465073 RGL3Q3MIN7 710 aa33.98■■■■□ 3.03
USP42-205ENST00000465073 SPATA31E1Q6ZUB1 1445 aa33.96■■■■□ 3.03
USP42-205ENST00000465073 SOS2Q07890 1332 aaPredicted RBP33.95■■■■□ 3.03
USP42-205ENST00000465073 ANKRD30BQ9BXX2 1392 aa33.95■■■■□ 3.03
USP42-205ENST00000465073 LAMC1P11047 1609 aa33.94■■■■□ 3.02
USP42-205ENST00000465073 ACIN1Q9UKV3 1341 aaKnown RBP33.94■■■■□ 3.02
USP42-205ENST00000465073 C8orf37Q96NL8 207 aa33.93■■■■□ 3.02
USP42-205ENST00000465073 CDK12Q9NYV4 1490 aaPredicted RBP33.9■■■■□ 3.02
USP42-205ENST00000465073 STK26Q9P289 416 aa33.88■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 96.9 ms