RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-204ENST00000462815 ROBO1Q9Y6N7 1651 aa17.45■□□□□ 0.38
PTPN7-204ENST00000462815 SLC52A1Q9NWF4 448 aa17.45■□□□□ 0.38
PTPN7-204ENST00000462815 SLC26A8Q96RN1 970 aa17.44■□□□□ 0.38
PTPN7-204ENST00000462815 STAG3Q9UJ98 1225 aa17.43■□□□□ 0.38
PTPN7-204ENST00000462815 CHD2O14647 1828 aaKnown RBP17.42■□□□□ 0.38
PTPN7-204ENST00000462815 E9PCH4 1651 aa17.42■□□□□ 0.38
PTPN7-204ENST00000462815 PLEKHG1Q9ULL1 1385 aa17.42■□□□□ 0.38
PTPN7-204ENST00000462815 PHF23Q9BUL5 403 aaPredicted RBP17.42■□□□□ 0.38
PTPN7-204ENST00000462815 RBM33Q96EV2 1170 aaKnown RBP17.41■□□□□ 0.38
PTPN7-204ENST00000462815 IQGAP3Q86VI3 1631 aa17.4■□□□□ 0.38
PTPN7-204ENST00000462815 RIMS2Q9UQ26 1411 aa17.4■□□□□ 0.38
PTPN7-204ENST00000462815 FAM50AQ14320 339 aaKnown RBP17.39■□□□□ 0.37
PTPN7-204ENST00000462815 ROCK1Q13464 1354 aa17.38■□□□□ 0.37
PTPN7-204ENST00000462815 ADAMTS13Q76LX8 1427 aa17.38■□□□□ 0.37
PTPN7-204ENST00000462815 PROSER2Q86WR7 435 aaPredicted RBP17.37■□□□□ 0.37
PTPN7-204ENST00000462815 DIP2AQ14689 1571 aa17.35■□□□□ 0.37
PTPN7-204ENST00000462815 COL16A1Q07092 1604 aaPredicted RBP17.34■□□□□ 0.37
PTPN7-204ENST00000462815 NCOA3Q9Y6Q9 1424 aa17.33■□□□□ 0.36
PTPN7-204ENST00000462815 MSH6P52701 1360 aa17.33■□□□□ 0.36
PTPN7-204ENST00000462815 PHLPP1O60346 1717 aa17.33■□□□□ 0.36
PTPN7-204ENST00000462815 TBX22Q9Y458 520 aa17.32■□□□□ 0.36
PTPN7-204ENST00000462815 NRXN3Q9Y4C0 1643 aa17.31■□□□□ 0.36
PTPN7-204ENST00000462815 POTEAQ6S8J7 498 aa17.3■□□□□ 0.36
PTPN7-204ENST00000462815 SLAIN2Q9P270 581 aa17.3■□□□□ 0.36
PTPN7-204ENST00000462815 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.29■□□□□ 0.36
PTPN7-204ENST00000462815 PTPRUQ92729 1446 aa17.29■□□□□ 0.36
PTPN7-204ENST00000462815 PIK3R4Q99570 1358 aa17.28■□□□□ 0.36
PTPN7-204ENST00000462815 AHDC1Q5TGY3 1603 aaPredicted RBP17.28■□□□□ 0.36
PTPN7-204ENST00000462815 XRN1Q8IZH2 1706 aaKnown RBP17.27■□□□□ 0.35
PTPN7-204ENST00000462815 LRP6O75581 1613 aa17.26■□□□□ 0.35
PTPN7-204ENST00000462815 PPP1R15AO75807 674 aaPredicted RBP17.26■□□□□ 0.35
PTPN7-204ENST00000462815 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.26■□□□□ 0.35
PTPN7-204ENST00000462815 SETBP1Q9Y6X0 1596 aa17.26■□□□□ 0.35
PTPN7-204ENST00000462815 JCADQ9P266 1359 aa17.26■□□□□ 0.35
PTPN7-204ENST00000462815 TRPM2O94759 1503 aa17.26■□□□□ 0.35
PTPN7-204ENST00000462815 SPHKAPQ2M3C7 1700 aa17.25■□□□□ 0.35
PTPN7-204ENST00000462815 HDGFP51858 240 aaKnown RBP17.25■□□□□ 0.35
PTPN7-204ENST00000462815 BCANQ96GW7 911 aa17.25■□□□□ 0.35
PTPN7-204ENST00000462815 NUP155O75694 1391 aa17.25■□□□□ 0.35
PTPN7-204ENST00000462815 NUTM2DQ5VT03 806 aaPredicted RBP17.24■□□□□ 0.35
PTPN7-204ENST00000462815 SHPRHQ149N8 1683 aa17.23■□□□□ 0.35
PTPN7-204ENST00000462815 CHGAP10645 457 aaKnown RBP17.22■□□□□ 0.35
PTPN7-204ENST00000462815 SETD1AO15047 1707 aaKnown RBP17.21■□□□□ 0.35
PTPN7-204ENST00000462815 DCCP43146 1447 aa17.2■□□□□ 0.34
PTPN7-204ENST00000462815 CLTCL1P53675 1640 aa17.19■□□□□ 0.34
PTPN7-204ENST00000462815 C19orf44Q9H6X5 657 aa17.19■□□□□ 0.34
PTPN7-204ENST00000462815 NEXMIFQ5QGS0 1516 aa17.19■□□□□ 0.34
PTPN7-204ENST00000462815 CADPS2Q86UW7 1296 aa17.18■□□□□ 0.34
PTPN7-204ENST00000462815 AMOTL2Q9Y2J4 779 aa17.18■□□□□ 0.34
PTPN7-204ENST00000462815 NHSL1Q5SYE7 1610 aa17.17■□□□□ 0.34
PTPN7-204ENST00000462815 ASXL1Q8IXJ9 1541 aa17.16■□□□□ 0.34
PTPN7-204ENST00000462815 METP08581 1390 aa17.16■□□□□ 0.34
PTPN7-204ENST00000462815 MST1RQ04912 1400 aa17.16■□□□□ 0.34
PTPN7-204ENST00000462815 SPATA31A6Q5VVP1 1343 aa17.16■□□□□ 0.34
PTPN7-204ENST00000462815 RRBP1Q9P2E9 1410 aaKnown RBP17.15■□□□□ 0.34
PTPN7-204ENST00000462815 BRINP3Q76B58 766 aa17.15■□□□□ 0.34
PTPN7-204ENST00000462815 NALCNQ8IZF0 1738 aa17.14■□□□□ 0.33
PTPN7-204ENST00000462815 ITGAEP38570 1179 aa17.14■□□□□ 0.33
PTPN7-204ENST00000462815 NAIPQ13075 1403 aa17.13■□□□□ 0.33
PTPN7-204ENST00000462815 ATF3P18847 181 aa17.12■□□□□ 0.33
PTPN7-204ENST00000462815 C14orf37Q86TY3 774 aa17.12■□□□□ 0.33
PTPN7-204ENST00000462815 SETD5Q9C0A6 1442 aa17.12■□□□□ 0.33
PTPN7-204ENST00000462815 PPARGC1BQ86YN6 1023 aaKnown RBP17.11■□□□□ 0.33
PTPN7-204ENST00000462815 ADGRL3Q9HAR2 1447 aa17.11■□□□□ 0.33
PTPN7-204ENST00000462815 PRAG1Q86YV5 1406 aa17.09■□□□□ 0.33
PTPN7-204ENST00000462815 LAMC1P11047 1609 aa17.09■□□□□ 0.33
PTPN7-204ENST00000462815 KIF1BO60333 1816 aa17.07■□□□□ 0.32
PTPN7-204ENST00000462815 PTCH1Q13635 1447 aa17.06■□□□□ 0.32
PTPN7-204ENST00000462815 ZNF326Q5BKZ1 582 aaKnown RBP17.05■□□□□ 0.32
PTPN7-204ENST00000462815 HFM1A2PYH4 1435 aa17.04■□□□□ 0.32
PTPN7-204ENST00000462815 ZNF772Q68DY9 489 aaPredicted RBP17.04■□□□□ 0.32
PTPN7-204ENST00000462815 CDK12Q9NYV4 1490 aaPredicted RBP17.04■□□□□ 0.32
PTPN7-204ENST00000462815 PNPLA6Q8IY17 1366 aa17.03■□□□□ 0.32
PTPN7-204ENST00000462815 C1orf167Q5SNV9 1468 aa17.03■□□□□ 0.32
PTPN7-204ENST00000462815 ROBO2Q9HCK4 1378 aa17.02■□□□□ 0.32
PTPN7-204ENST00000462815 PPLO60437 1756 aa17.02■□□□□ 0.32
PTPN7-204ENST00000462815 MEX3CQ5U5Q3 659 aaKnown RBP17.01■□□□□ 0.31
PTPN7-204ENST00000462815 DDX17Q92841 729 aaKnown RBP17.01■□□□□ 0.31
PTPN7-204ENST00000462815 UPF1Q92900 1129 aaKnown RBP eCLIP17■□□□□ 0.317e-8■■■□□ 17.1
PTPN7-204ENST00000462815 AFF2P51816 1311 aa16.98■□□□□ 0.31
PTPN7-204ENST00000462815 LRRC59Q96AG4 307 aaKnown RBP16.98■□□□□ 0.31
PTPN7-204ENST00000462815 NUTM2BA6NNL0 878 aaPredicted RBP16.97■□□□□ 0.31
PTPN7-204ENST00000462815 NUTM2EB1AL46 878 aaPredicted RBP16.97■□□□□ 0.31
PTPN7-204ENST00000462815 NUTM2AQ8IVF1 878 aaPredicted RBP16.97■□□□□ 0.31
PTPN7-204ENST00000462815 TRIM52Q96A61 297 aa16.97■□□□□ 0.31
PTPN7-204ENST00000462815 COL22A1Q8NFW1 1626 aaPredicted RBP16.96■□□□□ 0.3
PTPN7-204ENST00000462815 RGS12O14924 1447 aa16.96■□□□□ 0.3
PTPN7-204ENST00000462815 SOS2Q07890 1332 aaPredicted RBP16.96■□□□□ 0.3
PTPN7-204ENST00000462815 RXRBP28702 533 aa16.95■□□□□ 0.3
PTPN7-204ENST00000462815 RPGRIP1LQ68CZ1 1315 aa16.95■□□□□ 0.3
PTPN7-204ENST00000462815 CDC42BPGQ6DT37 1551 aa16.94■□□□□ 0.3
PTPN7-204ENST00000462815 IFT172Q9UG01 1749 aa16.94■□□□□ 0.3
PTPN7-204ENST00000462815 VGFO15240 615 aaPredicted RBP16.94■□□□□ 0.3
PTPN7-204ENST00000462815 SRCAPQ6ZRS2 3230 aa16.94■□□□□ 0.3
PTPN7-204ENST00000462815 ORAI2Q96SN7 254 aa16.93■□□□□ 0.3
PTPN7-204ENST00000462815 SPATA31E1Q6ZUB1 1445 aa16.93■□□□□ 0.3
PTPN7-204ENST00000462815 EP400Q96L91 3159 aa16.93■□□□□ 0.3
PTPN7-204ENST00000462815 TECPR2O15040 1411 aa16.91■□□□□ 0.3
PTPN7-204ENST00000462815 PXDNQ92626 1479 aa16.91■□□□□ 0.3
PTPN7-204ENST00000462815 C8orf37Q96NL8 207 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms