RNA–Protein interactions for RNA: ENST00000462700.5

COL9A3-203, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 1,237 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-203ENST00000462700 CLTCL1P53675 1640 aa28.1■■■□□ 2.09
COL9A3-203ENST00000462700 RAB3GAP2Q9H2M9 1393 aa28.09■■■□□ 2.09
COL9A3-203ENST00000462700 HDGFP51858 240 aaKnown RBP28.08■■■□□ 2.09
COL9A3-203ENST00000462700 MPHOSPH9Q99550 1183 aa28.07■■■□□ 2.08
COL9A3-203ENST00000462700 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.06■■■□□ 2.08
COL9A3-203ENST00000462700 PPP1R15AO75807 674 aaPredicted RBP28.05■■■□□ 2.08
COL9A3-203ENST00000462700 PLEKHG1Q9ULL1 1385 aa28.05■■■□□ 2.08
COL9A3-203ENST00000462700 FOXD1Q16676 465 aa28.03■■■□□ 2.08
COL9A3-203ENST00000462700 STRCP1A6NGW2 1772 aa28.01■■■□□ 2.08
COL9A3-203ENST00000462700 SLC26A8Q96RN1 970 aa28.01■■■□□ 2.07
COL9A3-203ENST00000462700 NUTM2DQ5VT03 806 aaPredicted RBP28■■■□□ 2.07
COL9A3-203ENST00000462700 BCANQ96GW7 911 aa28■■■□□ 2.07
COL9A3-203ENST00000462700 ZNF326Q5BKZ1 582 aaKnown RBP27.98■■■□□ 2.07
COL9A3-203ENST00000462700 SENP3Q9H4L4 574 aaPredicted RBP27.97■■■□□ 2.07
COL9A3-203ENST00000462700 LRRC7Q96NW7 1537 aa27.96■■■□□ 2.07
COL9A3-203ENST00000462700 KIF1BO60333 1816 aa27.95■■■□□ 2.07
COL9A3-203ENST00000462700 NEXMIFQ5QGS0 1516 aa27.93■■■□□ 2.06
COL9A3-203ENST00000462700 HRCP23327 699 aa27.93■■■□□ 2.06
COL9A3-203ENST00000462700 CCDC144AA2RUR9 1427 aa27.92■■■□□ 2.06
COL9A3-203ENST00000462700 ADAMTS13Q76LX8 1427 aa27.92■■■□□ 2.06
COL9A3-203ENST00000462700 KCNA6P17658 529 aa27.91■■■□□ 2.06
COL9A3-203ENST00000462700 TBX22Q9Y458 520 aa27.91■■■□□ 2.06
COL9A3-203ENST00000462700 DIP2AQ14689 1571 aa27.9■■■□□ 2.06
COL9A3-203ENST00000462700 NWD1Q149M9 1564 aa27.9■■■□□ 2.06
COL9A3-203ENST00000462700 UBAP1LF5GYI3 381 aa27.89■■■□□ 2.06
COL9A3-203ENST00000462700 SETBP1Q9Y6X0 1596 aa27.86■■■□□ 2.05
COL9A3-203ENST00000462700 NKTRP30414 1462 aaKnown RBP27.85■■■□□ 2.05
COL9A3-203ENST00000462700 NRXN3Q9Y4C0 1643 aa27.85■■■□□ 2.05
COL9A3-203ENST00000462700 RPGRIP1LQ68CZ1 1315 aa27.84■■■□□ 2.05
COL9A3-203ENST00000462700 PIK3R4Q99570 1358 aa27.83■■■□□ 2.05
COL9A3-203ENST00000462700 SPATA31E1Q6ZUB1 1445 aa27.83■■■□□ 2.05
COL9A3-203ENST00000462700 CHD2O14647 1828 aaKnown RBP27.81■■■□□ 2.04
COL9A3-203ENST00000462700 TOM1O60784 492 aa27.8■■■□□ 2.04
COL9A3-203ENST00000462700 TMEM94Q12767 1356 aa27.8■■■□□ 2.04
COL9A3-203ENST00000462700 VGFO15240 615 aaPredicted RBP27.79■■■□□ 2.04
COL9A3-203ENST00000462700 PROSER2Q86WR7 435 aaPredicted RBP27.78■■■□□ 2.04
COL9A3-203ENST00000462700 XIRP1Q702N8 1843 aaKnown RBP27.78■■■□□ 2.04
COL9A3-203ENST00000462700 PPLO60437 1756 aa27.77■■■□□ 2.04
COL9A3-203ENST00000462700 ALKQ9UM73 1620 aa27.77■■■□□ 2.04
COL9A3-203ENST00000462700 RGL3Q3MIN7 710 aa27.76■■■□□ 2.03
COL9A3-203ENST00000462700 PTPRUQ92729 1446 aa27.75■■■□□ 2.03
COL9A3-203ENST00000462700 ANKRD30BQ9BXX2 1392 aa27.75■■■□□ 2.03
COL9A3-203ENST00000462700 RBM33Q96EV2 1170 aaKnown RBP27.74■■■□□ 2.03
COL9A3-203ENST00000462700 METP08581 1390 aa27.73■■■□□ 2.03
COL9A3-203ENST00000462700 PIP4K2BP78356 416 aa27.72■■■□□ 2.03
COL9A3-203ENST00000462700 AMOTL2Q9Y2J4 779 aa27.71■■■□□ 2.03
COL9A3-203ENST00000462700 SCAF1Q9H7N4 1312 aaKnown RBP27.7■■■□□ 2.03
COL9A3-203ENST00000462700 IFT172Q9UG01 1749 aa27.7■■■□□ 2.02
COL9A3-203ENST00000462700 XRN1Q8IZH2 1706 aaKnown RBP27.68■■■□□ 2.02
COL9A3-203ENST00000462700 ADGRF5Q8IZF2 1346 aa27.67■■■□□ 2.02
COL9A3-203ENST00000462700 SETD1AO15047 1707 aaKnown RBP27.67■■■□□ 2.02
COL9A3-203ENST00000462700 NCOA3Q9Y6Q9 1424 aa27.67■■■□□ 2.02
COL9A3-203ENST00000462700 MSH6P52701 1360 aa27.64■■■□□ 2.02
COL9A3-203ENST00000462700 PIK3C2GO75747 1445 aa27.6■■■□□ 2.01
COL9A3-203ENST00000462700 MYOM2P54296 1465 aa27.59■■■□□ 2.01
COL9A3-203ENST00000462700 TRIM26Q12899 539 aaPredicted RBP27.59■■■□□ 2.01
COL9A3-203ENST00000462700 C14orf37Q86TY3 774 aa27.58■■■□□ 2.01
COL9A3-203ENST00000462700 NRXN1Q9ULB1 1477 aa27.57■■■□□ 2
COL9A3-203ENST00000462700 HSPA1LP34931 641 aa27.56■■■□□ 2
COL9A3-203ENST00000462700 PRAG1Q86YV5 1406 aa27.56■■■□□ 2
COL9A3-203ENST00000462700 PTCH1Q13635 1447 aa27.55■■■□□ 2
COL9A3-203ENST00000462700 C19orf44Q9H6X5 657 aa27.54■■■□□ 2
COL9A3-203ENST00000462700 FAM135BQ49AJ0 1406 aa27.53■■■□□ 2
COL9A3-203ENST00000462700 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.52■■■□□ 2
COL9A3-203ENST00000462700 ROBO2Q9HCK4 1378 aa27.51■■□□□ 1.99
COL9A3-203ENST00000462700 ASXL1Q8IXJ9 1541 aa27.51■■□□□ 1.99
COL9A3-203ENST00000462700 CADPS2Q86UW7 1296 aa27.49■■□□□ 1.99
COL9A3-203ENST00000462700 SLAIN2Q9P270 581 aa27.49■■□□□ 1.99
COL9A3-203ENST00000462700 DCCP43146 1447 aa27.49■■□□□ 1.99
COL9A3-203ENST00000462700 ATF3P18847 181 aa27.48■■□□□ 1.99
COL9A3-203ENST00000462700 C14orf93Q9H972 538 aaKnown RBP27.48■■□□□ 1.99
COL9A3-203ENST00000462700 ADGRL3Q9HAR2 1447 aa27.48■■□□□ 1.99
COL9A3-203ENST00000462700 DHX57Q6P158 1386 aaKnown RBP27.48■■□□□ 1.99
COL9A3-203ENST00000462700 ROBO1Q9Y6N7 1651 aa27.47■■□□□ 1.99
COL9A3-203ENST00000462700 DCAF11Q8TEB1 546 aa27.47■■□□□ 1.99
COL9A3-203ENST00000462700 LAMC1P11047 1609 aa27.46■■□□□ 1.99
COL9A3-203ENST00000462700 TMEM132EQ6IEE7 984 aa27.46■■□□□ 1.99
COL9A3-203ENST00000462700 LRPPRCP42704 1394 aaKnown RBP27.46■■□□□ 1.99
COL9A3-203ENST00000462700 TECPR2O15040 1411 aa27.45■■□□□ 1.98
COL9A3-203ENST00000462700 CFAP70Q5T0N1 1121 aa27.45■■□□□ 1.98
COL9A3-203ENST00000462700 STAC3Q96MF2 364 aa27.44■■□□□ 1.98
COL9A3-203ENST00000462700 KDM2AQ9Y2K7 1162 aa27.44■■□□□ 1.98
COL9A3-203ENST00000462700 NALCNQ8IZF0 1738 aa27.44■■□□□ 1.98
COL9A3-203ENST00000462700 STK26Q9P289 416 aa27.42■■□□□ 1.98
COL9A3-203ENST00000462700 ABCC11Q96J66 1382 aa27.42■■□□□ 1.98
COL9A3-203ENST00000462700 YTHDC2Q9H6S0 1430 aaKnown RBP27.41■■□□□ 1.98
COL9A3-203ENST00000462700 KNDC1Q76NI1 1749 aa27.41■■□□□ 1.98
COL9A3-203ENST00000462700 MST1RQ04912 1400 aa27.38■■□□□ 1.97
COL9A3-203ENST00000462700 ADGRB1O14514 1584 aa27.35■■□□□ 1.97
COL9A3-203ENST00000462700 WAPLQ7Z5K2 1190 aa27.34■■□□□ 1.97
COL9A3-203ENST00000462700 SIN3AQ96ST3 1273 aa27.33■■□□□ 1.97
COL9A3-203ENST00000462700 PLEKHH1Q9ULM0 1364 aa27.33■■□□□ 1.97
COL9A3-203ENST00000462700 SIRT1Q96EB6 747 aa27.32■■□□□ 1.96
COL9A3-203ENST00000462700 BRINP3Q76B58 766 aa27.31■■□□□ 1.96
COL9A3-203ENST00000462700 CDC42BPGQ6DT37 1551 aa27.3■■□□□ 1.96
COL9A3-203ENST00000462700 PHLPP1O60346 1717 aa27.28■■□□□ 1.96
COL9A3-203ENST00000462700 AHDC1Q5TGY3 1603 aaPredicted RBP27.28■■□□□ 1.96
COL9A3-203ENST00000462700 DLC1Q96QB1 1528 aa27.28■■□□□ 1.96
COL9A3-203ENST00000462700 C1orf167Q5SNV9 1468 aa27.28■■□□□ 1.96
COL9A3-203ENST00000462700 NEUROD1Q13562 356 aa27.26■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms