RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 MYBBP1AQ9BQG0 1328 aaKnown RBP6.32□□□□□ -1.4
CSMD3-204ENST00000455883 CREBRFQ8IUR6 639 aa6.32□□□□□ -1.4
CSMD3-204ENST00000455883 TCHHQ07283 1943 aa6.32□□□□□ -1.4
CSMD3-204ENST00000455883 DHX37Q8IY37 1157 aaKnown RBP6.32□□□□□ -1.4
CSMD3-204ENST00000455883 MFAP1P55081 439 aaKnown RBP6.32□□□□□ -1.4
CSMD3-204ENST00000455883 RTF1Q92541 710 aaKnown RBP6.32□□□□□ -1.4
CSMD3-204ENST00000455883 HIP1O00291 1037 aa6.32□□□□□ -1.4
CSMD3-204ENST00000455883 ERLIN1O75477 346 aa6.32□□□□□ -1.4
CSMD3-204ENST00000455883 FYCO1Q9BQS8 1478 aa6.32□□□□□ -1.4
CSMD3-204ENST00000455883 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.31□□□□□ -1.4
CSMD3-204ENST00000455883 THOC2Q8NI27 1593 aaKnown RBP6.31□□□□□ -1.4
CSMD3-204ENST00000455883 KIF3BO15066 747 aa6.31□□□□□ -1.4
CSMD3-204ENST00000455883 LEKR1Q6ZMV7 388 aa6.31□□□□□ -1.4
CSMD3-204ENST00000455883 DDX19BQ9UMR2 479 aa6.31□□□□□ -1.4
CSMD3-204ENST00000455883 DHX16O60231 1041 aaKnown RBP6.31□□□□□ -1.4
CSMD3-204ENST00000455883 LUZP1Q86V48 1076 aa6.31□□□□□ -1.4
CSMD3-204ENST00000455883 STK11IPQ8N1F8 1099 aa6.31□□□□□ -1.4
CSMD3-204ENST00000455883 ERLIN2O94905 339 aa6.31□□□□□ -1.4
CSMD3-204ENST00000455883 DDX12PQ92771 950 aa6.31□□□□□ -1.4
CSMD3-204ENST00000455883 CHMP7Q8WUX9 453 aaPredicted RBP6.31□□□□□ -1.4
CSMD3-204ENST00000455883 JMYQ8N9B5 988 aa6.31□□□□□ -1.4
CSMD3-204ENST00000455883 GBP3Q9H0R5 595 aa6.31□□□□□ -1.4
CSMD3-204ENST00000455883 HDGFL2Q7Z4V5 671 aaPredicted RBP6.3□□□□□ -1.4
CSMD3-204ENST00000455883 GOLGA6L10A6NI86 522 aa6.3□□□□□ -1.4
CSMD3-204ENST00000455883 CHMP5Q9NZZ3 219 aa6.3□□□□□ -1.4
CSMD3-204ENST00000455883 DDX11Q96FC9 970 aa6.3□□□□□ -1.4
CSMD3-204ENST00000455883 TMX4Q9H1E5 349 aaPredicted RBP6.3□□□□□ -1.4
CSMD3-204ENST00000455883 ERCC6Q03468 1493 aa6.3□□□□□ -1.4
CSMD3-204ENST00000455883 NEFHP12036 1026 aa6.3□□□□□ -1.4
CSMD3-204ENST00000455883 EIF2AK4Q9P2K8 1649 aaKnown RBP6.3□□□□□ -1.4
CSMD3-204ENST00000455883 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.3□□□□□ -1.4
CSMD3-204ENST00000455883 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.3□□□□□ -1.4
CSMD3-204ENST00000455883 FAM13BQ9NYF5 915 aa6.3□□□□□ -1.4
CSMD3-204ENST00000455883 EHBP1L1Q8N3D4 1523 aa6.3□□□□□ -1.4
CSMD3-204ENST00000455883 HOXA7P31268 230 aaPredicted RBP6.3□□□□□ -1.4
CSMD3-204ENST00000455883 BRD4O60885 1362 aaPredicted RBP6.3□□□□□ -1.4
CSMD3-204ENST00000455883 ANKRD30BQ9BXX2 1392 aa6.3□□□□□ -1.4
CSMD3-204ENST00000455883 RAPGEF2Q9Y4G8 1499 aa6.29□□□□□ -1.4
CSMD3-204ENST00000455883 CWC22Q9HCG8 908 aaKnown RBP6.29□□□□□ -1.4
CSMD3-204ENST00000455883 SLKQ9H2G2 1235 aaPredicted RBP6.29□□□□□ -1.4
CSMD3-204ENST00000455883 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.29□□□□□ -1.4
CSMD3-204ENST00000455883 CROCCQ5TZA2 2017 aa6.29□□□□□ -1.4
CSMD3-204ENST00000455883 CC2D2AQ9P2K1 1620 aa6.29□□□□□ -1.4
CSMD3-204ENST00000455883 PLCB2Q00722 1185 aa6.29□□□□□ -1.4
CSMD3-204ENST00000455883 MAP9Q49MG5 647 aa6.29□□□□□ -1.4
CSMD3-204ENST00000455883 GOLGA6L9A6NEM1 432 aa6.28□□□□□ -1.4
CSMD3-204ENST00000455883 NEMFO60524 1076 aa6.28□□□□□ -1.4
CSMD3-204ENST00000455883 MYOM3Q5VTT5 1437 aa6.28□□□□□ -1.4
CSMD3-204ENST00000455883 EZRP15311 586 aaKnown RBP6.28□□□□□ -1.4
CSMD3-204ENST00000455883 APPP05067 770 aa6.28□□□□□ -1.4
CSMD3-204ENST00000455883 SMARCE1Q969G3 411 aa6.28□□□□□ -1.4
CSMD3-204ENST00000455883 POTEB2H3BUK9 544 aa6.28□□□□□ -1.4
CSMD3-204ENST00000455883 XBP1P17861 261 aa6.27□□□□□ -1.41
CSMD3-204ENST00000455883 DACH1Q9UI36 760 aa6.27□□□□□ -1.41
CSMD3-204ENST00000455883 MYO18AQ92614 2054 aaKnown RBP6.27□□□□□ -1.41
CSMD3-204ENST00000455883 CCDC141Q6ZP82 1450 aa6.27□□□□□ -1.41
CSMD3-204ENST00000455883 EIF3DO15371 548 aaKnown RBP eCLIP6.27□□□□□ -1.41
CSMD3-204ENST00000455883 GTPBP4Q9BZE4 634 aaKnown RBP6.27□□□□□ -1.41
CSMD3-204ENST00000455883 AMOTL1Q8IY63 956 aa6.27□□□□□ -1.41
CSMD3-204ENST00000455883 ZNF771Q7L3S4 317 aaPredicted RBP6.27□□□□□ -1.41
CSMD3-204ENST00000455883 RGS3P49796 1198 aa6.27□□□□□ -1.41
CSMD3-204ENST00000455883 ANKRD1Q15327 319 aa6.27□□□□□ -1.41
CSMD3-204ENST00000455883 CARMIL1Q5VZK9 1371 aa6.27□□□□□ -1.41
CSMD3-204ENST00000455883 KIAA0754O94854 1291 aa6.27□□□□□ -1.41
CSMD3-204ENST00000455883 CALCOCO1Q9P1Z2 691 aa6.27□□□□□ -1.41
CSMD3-204ENST00000455883 POLR1AO95602 1720 aaPredicted RBP6.27□□□□□ -1.41
CSMD3-204ENST00000455883 HFM1A2PYH4 1435 aa6.27□□□□□ -1.41
CSMD3-204ENST00000455883 CTTNBP2Q8WZ74 1663 aa6.27□□□□□ -1.41
CSMD3-204ENST00000455883 H0YHG0 523 aa6.27□□□□□ -1.41
CSMD3-204ENST00000455883 FAM193AP78312 1265 aa6.27□□□□□ -1.41
CSMD3-204ENST00000455883 ZNHIT6Q9NWK9 470 aaKnown RBP6.27□□□□□ -1.41
CSMD3-204ENST00000455883 USH1CQ9Y6N9 552 aa6.27□□□□□ -1.41
CSMD3-204ENST00000455883 PDE4DIPQ5VU43 2346 aa6.27□□□□□ -1.41
CSMD3-204ENST00000455883 SPATA24Q86W54 205 aa6.26□□□□□ -1.41
CSMD3-204ENST00000455883 DNAI2Q9GZS0 605 aa6.26□□□□□ -1.41
CSMD3-204ENST00000455883 NASPP49321 788 aaPredicted RBP6.26□□□□□ -1.41
CSMD3-204ENST00000455883 ERC2O15083 957 aa6.26□□□□□ -1.41
CSMD3-204ENST00000455883 FMNL3Q8IVF7 1028 aa6.26□□□□□ -1.41
CSMD3-204ENST00000455883 POGKQ9P215 609 aa6.26□□□□□ -1.41
CSMD3-204ENST00000455883 INTS3Q68E01 1043 aaKnown RBP6.26□□□□□ -1.41
CSMD3-204ENST00000455883 CUX2O14529 1486 aa6.25□□□□□ -1.41
CSMD3-204ENST00000455883 PSMA5P28066 241 aa6.25□□□□□ -1.41
CSMD3-204ENST00000455883 AKAP17AQ02040 695 aaKnown RBP6.25□□□□□ -1.41
CSMD3-204ENST00000455883 CCDC73Q6ZRK6 1079 aa6.25□□□□□ -1.41
CSMD3-204ENST00000455883 ARXQ96QS3 562 aa6.25□□□□□ -1.41
CSMD3-204ENST00000455883 SAFBQ15424 915 aaKnown RBP eCLIP6.25□□□□□ -1.41
CSMD3-204ENST00000455883 MORC1Q86VD1 984 aa6.25□□□□□ -1.41
CSMD3-204ENST00000455883 BRMS1Q9HCU9 246 aa6.25□□□□□ -1.41
CSMD3-204ENST00000455883 SF3A1Q15459 793 aaKnown RBP6.25□□□□□ -1.41
CSMD3-204ENST00000455883 MICALCLQ6ZW33 695 aa6.25□□□□□ -1.41
CSMD3-204ENST00000455883 RAB3GAP2Q9H2M9 1393 aa6.25□□□□□ -1.41
CSMD3-204ENST00000455883 DESP17661 470 aa6.25□□□□□ -1.41
CSMD3-204ENST00000455883 FBLN2P98095 1184 aa6.25□□□□□ -1.41
CSMD3-204ENST00000455883 DDX49Q9Y6V7 483 aaKnown RBP6.25□□□□□ -1.41
CSMD3-204ENST00000455883 H3BQV1 296 aa6.25□□□□□ -1.41
CSMD3-204ENST00000455883 IFFO2Q5TF58 517 aa6.25□□□□□ -1.41
CSMD3-204ENST00000455883 DYDC1Q8WWB3 177 aa6.25□□□□□ -1.41
CSMD3-204ENST00000455883 ICE1Q9Y2F5 2266 aa6.25□□□□□ -1.41
CSMD3-204ENST00000455883 SYNE3Q6ZMZ3 975 aa6.25□□□□□ -1.41
CSMD3-204ENST00000455883 API5Q9BZZ5 524 aaKnown RBP6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms