RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 RIMS2Q9UQ26 1411 aa41.23■■■■■ 4.19
SMARCC1-203ENST00000454240 HDGFP51858 240 aaKnown RBP41.19■■■■■ 4.18
SMARCC1-203ENST00000454240 ANKRD30BQ9BXX2 1392 aa41.19■■■■■ 4.18
SMARCC1-203ENST00000454240 ABCF1Q8NE71 845 aaKnown RBP eCLIP41.15■■■■■ 4.18
SMARCC1-203ENST00000454240 ZNF326Q5BKZ1 582 aaKnown RBP41.13■■■■■ 4.17
SMARCC1-203ENST00000454240 NEXMIFQ5QGS0 1516 aa41.09■■■■■ 4.17
SMARCC1-203ENST00000454240 SPATA31E1Q6ZUB1 1445 aa41.09■■■■■ 4.17
SMARCC1-203ENST00000454240 PPP1R15AO75807 674 aaPredicted RBP41.07■■■■■ 4.17
SMARCC1-203ENST00000454240 PLEKHG1Q9ULL1 1385 aa41.07■■■■■ 4.16
SMARCC1-203ENST00000454240 NUTM2DQ5VT03 806 aaPredicted RBP41.06■■■■■ 4.16
SMARCC1-203ENST00000454240 PCGF6Q9BYE7 350 aa41.04■■■■■ 4.16
SMARCC1-203ENST00000454240 RPGRIP1LQ68CZ1 1315 aa41.03■■■■■ 4.16
SMARCC1-203ENST00000454240 PPLO60437 1756 aa41.02■■■■■ 4.16
SMARCC1-203ENST00000454240 ZNF335Q9H4Z2 1342 aaPredicted RBP41■■■■■ 4.15
SMARCC1-203ENST00000454240 LTBP4Q8N2S1 1624 aa41■■■■■ 4.15
SMARCC1-203ENST00000454240 DHX57Q6P158 1386 aaKnown RBP40.98■■■■■ 4.15
SMARCC1-203ENST00000454240 RGL3Q3MIN7 710 aa40.97■■■■■ 4.15
SMARCC1-203ENST00000454240 BCANQ96GW7 911 aa40.95■■■■■ 4.15
SMARCC1-203ENST00000454240 SLC26A8Q96RN1 970 aa40.95■■■■■ 4.15
SMARCC1-203ENST00000454240 IFT172Q9UG01 1749 aa40.95■■■■■ 4.15
SMARCC1-203ENST00000454240 VGFO15240 615 aaPredicted RBP40.92■■■■■ 4.14
SMARCC1-203ENST00000454240 SENP3Q9H4L4 574 aaPredicted RBP40.92■■■■■ 4.14
SMARCC1-203ENST00000454240 ADAMTS13Q76LX8 1427 aa40.91■■■■■ 4.14
SMARCC1-203ENST00000454240 NRXN3Q9Y4C0 1643 aa40.9■■■■■ 4.14
SMARCC1-203ENST00000454240 SETBP1Q9Y6X0 1596 aa40.9■■■■■ 4.14
SMARCC1-203ENST00000454240 STRCP1A6NGW2 1772 aa40.89■■■■■ 4.14
SMARCC1-203ENST00000454240 TBX22Q9Y458 520 aa40.88■■■■■ 4.13
SMARCC1-203ENST00000454240 DIP2AQ14689 1571 aa40.86■■■■■ 4.13
SMARCC1-203ENST00000454240 CERKQ8TCT0 537 aa40.82■■■■■ 4.13
SMARCC1-203ENST00000454240 CPS1P31327 1500 aa40.82■■■■■ 4.12
SMARCC1-203ENST00000454240 CHD2O14647 1828 aaKnown RBP40.8■■■■■ 4.12
SMARCC1-203ENST00000454240 ADGRF5Q8IZF2 1346 aa40.77■■■■■ 4.12
SMARCC1-203ENST00000454240 KCNA6P17658 529 aa40.76■■■■■ 4.12
SMARCC1-203ENST00000454240 NWD1Q149M9 1564 aa40.74■■■■■ 4.11
SMARCC1-203ENST00000454240 PIK3R4Q99570 1358 aa40.74■■■■■ 4.11
SMARCC1-203ENST00000454240 SETD1AO15047 1707 aaKnown RBP40.73■■■■■ 4.11
SMARCC1-203ENST00000454240 MYOM2P54296 1465 aa40.72■■■■■ 4.11
SMARCC1-203ENST00000454240 ALKQ9UM73 1620 aa40.71■■■■■ 4.11
SMARCC1-203ENST00000454240 SIN3AQ96ST3 1273 aa40.7■■■■■ 4.11
SMARCC1-203ENST00000454240 IQSEC2Q5JU85 1478 aa40.69■■■■■ 4.1
SMARCC1-203ENST00000454240 NRXN1Q9ULB1 1477 aa40.69■■■■■ 4.1
SMARCC1-203ENST00000454240 LRRC7Q96NW7 1537 aa40.67■■■■■ 4.1
SMARCC1-203ENST00000454240 PIK3C2GO75747 1445 aa40.67■■■■■ 4.1
SMARCC1-203ENST00000454240 METP08581 1390 aa40.66■■■■■ 4.1
SMARCC1-203ENST00000454240 DCAF11Q8TEB1 546 aa40.65■■■■■ 4.1
SMARCC1-203ENST00000454240 STAC3Q96MF2 364 aa40.65■■■■■ 4.1
SMARCC1-203ENST00000454240 PTPRUQ92729 1446 aa40.63■■■■■ 4.09
SMARCC1-203ENST00000454240 NKTRP30414 1462 aaKnown RBP40.63■■■■■ 4.09
SMARCC1-203ENST00000454240 XIRP1Q702N8 1843 aaKnown RBP40.6■■■■■ 4.09
SMARCC1-203ENST00000454240 NEUROD1Q13562 356 aa40.59■■■■■ 4.09
SMARCC1-203ENST00000454240 KDM2AQ9Y2K7 1162 aa40.59■■■■■ 4.09
SMARCC1-203ENST00000454240 AMOTL2Q9Y2J4 779 aa40.58■■■■■ 4.09
SMARCC1-203ENST00000454240 XRN1Q8IZH2 1706 aaKnown RBP40.58■■■■■ 4.09
SMARCC1-203ENST00000454240 PROSER2Q86WR7 435 aaPredicted RBP40.53■■■■■ 4.08
SMARCC1-203ENST00000454240 C14orf93Q9H972 538 aaKnown RBP40.53■■■■■ 4.08
SMARCC1-203ENST00000454240 LAMC1P11047 1609 aa40.53■■■■■ 4.08
SMARCC1-203ENST00000454240 TMEM94Q12767 1356 aa40.49■■■■■ 4.07
SMARCC1-203ENST00000454240 L3MBTL2Q969R5 705 aa40.49■■■■■ 4.07
SMARCC1-203ENST00000454240 CFAP70Q5T0N1 1121 aa40.48■■■■■ 4.07
SMARCC1-203ENST00000454240 ASXL1Q8IXJ9 1541 aa40.47■■■■■ 4.07
SMARCC1-203ENST00000454240 RBM33Q96EV2 1170 aaKnown RBP40.44■■■■■ 4.06
SMARCC1-203ENST00000454240 PRAG1Q86YV5 1406 aa40.43■■■■■ 4.06
SMARCC1-203ENST00000454240 FBXO41Q8TF61 875 aa40.43■■■■■ 4.06
SMARCC1-203ENST00000454240 TMEM132EQ6IEE7 984 aa40.41■■■■■ 4.06
SMARCC1-203ENST00000454240 NCOA3Q9Y6Q9 1424 aa40.41■■■■■ 4.06
SMARCC1-203ENST00000454240 CLSPNQ9HAW4 1339 aa40.41■■■■■ 4.06
SMARCC1-203ENST00000454240 LRPPRCP42704 1394 aaKnown RBP40.37■■■■■ 4.05
SMARCC1-203ENST00000454240 PTCH1Q13635 1447 aa40.37■■■■■ 4.05
SMARCC1-203ENST00000454240 KNDC1Q76NI1 1749 aa40.36■■■■■ 4.05
SMARCC1-203ENST00000454240 KIAA1210Q9ULL0 1709 aa40.36■■■■■ 4.05
SMARCC1-203ENST00000454240 ADGRB1O14514 1584 aa40.35■■■■■ 4.05
SMARCC1-203ENST00000454240 YTHDC2Q9H6S0 1430 aaKnown RBP40.34■■■■■ 4.05
SMARCC1-203ENST00000454240 ABCC11Q96J66 1382 aa40.34■■■■■ 4.05
SMARCC1-203ENST00000454240 TECPR2O15040 1411 aa40.33■■■■■ 4.05
SMARCC1-203ENST00000454240 ROBO2Q9HCK4 1378 aa40.33■■■■■ 4.05
SMARCC1-203ENST00000454240 UBAP1LF5GYI3 381 aa40.32■■■■■ 4.05
SMARCC1-203ENST00000454240 TONSLQ96HA7 1378 aa40.32■■■■■ 4.04
SMARCC1-203ENST00000454240 STK26Q9P289 416 aa40.3■■■■■ 4.04
SMARCC1-203ENST00000454240 TOM1O60784 492 aa40.29■■■■■ 4.04
SMARCC1-203ENST00000454240 MSH6P52701 1360 aa40.28■■■■■ 4.04
SMARCC1-203ENST00000454240 CCER1Q8TC90 406 aaPredicted RBP40.28■■■■■ 4.04
SMARCC1-203ENST00000454240 SIPA1L2Q9P2F8 1722 aaPredicted RBP40.25■■■■■ 4.03
SMARCC1-203ENST00000454240 ILDR1Q86SU0 546 aaPredicted RBP40.24■■■■■ 4.03
SMARCC1-203ENST00000454240 C14orf37Q86TY3 774 aa40.24■■■■■ 4.03
SMARCC1-203ENST00000454240 C19orf44Q9H6X5 657 aa40.24■■■■■ 4.03
SMARCC1-203ENST00000454240 SIRT1Q96EB6 747 aa40.22■■■■■ 4.03
SMARCC1-203ENST00000454240 NALCNQ8IZF0 1738 aa40.21■■■■■ 4.03
SMARCC1-203ENST00000454240 TRPM1Q7Z4N2 1603 aa40.19■■■■■ 4.02
SMARCC1-203ENST00000454240 FAM135BQ49AJ0 1406 aa40.18■■■■■ 4.02
SMARCC1-203ENST00000454240 ADGRL3Q9HAR2 1447 aa40.18■■■■■ 4.02
SMARCC1-203ENST00000454240 DLC1Q96QB1 1528 aa40.18■■■■■ 4.02
SMARCC1-203ENST00000454240 NBPF1Q3BBV0 1214 aa40.17■■■■■ 4.02
SMARCC1-203ENST00000454240 WAPLQ7Z5K2 1190 aa40.16■■■■■ 4.02
SMARCC1-203ENST00000454240 NBPF8Q3BBV2 869 aa40.15■■■■■ 4.02
SMARCC1-203ENST00000454240 DCCP43146 1447 aa40.15■■■■■ 4.02
SMARCC1-203ENST00000454240 PLEKHH1Q9ULM0 1364 aa40.13■■■■■ 4.02
SMARCC1-203ENST00000454240 TRAK1Q9UPV9 953 aa40.13■■■■■ 4.01
SMARCC1-203ENST00000454240 CADPS2Q86UW7 1296 aa40.12■■■■■ 4.01
SMARCC1-203ENST00000454240 PIP4K2BP78356 416 aa40.11■■■■■ 4.01
SMARCC1-203ENST00000454240 TIMELESSQ9UNS1 1208 aa40.11■■■■■ 4.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms