RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 NPM1P06748 294 aaKnown RBP eCLIP15.21■□□□□ 0.03
MSH6-204ENST00000445503 EIF3AQ14152 1382 aaKnown RBP15.21■□□□□ 0.02
MSH6-204ENST00000445503 SLFN5Q08AF3 891 aa15.2■□□□□ 0.02
MSH6-204ENST00000445503 GZF1Q9H116 711 aaPredicted RBP15.2■□□□□ 0.02
MSH6-204ENST00000445503 TMEM132EQ6IEE7 984 aa15.19■□□□□ 0.02
MSH6-204ENST00000445503 STAG3Q9UJ98 1225 aa15.19■□□□□ 0.02
MSH6-204ENST00000445503 SRPK2P78362 688 aaKnown RBP15.17■□□□□ 0.02
MSH6-204ENST00000445503 PLEKHH1Q9ULM0 1364 aa15.17■□□□□ 0.02
MSH6-204ENST00000445503 MAPK8IP3Q9UPT6 1336 aa15.17■□□□□ 0.02
MSH6-204ENST00000445503 ADGRL2O95490 1459 aa15.17■□□□□ 0.02
MSH6-204ENST00000445503 CGNL1Q0VF96 1302 aa15.17■□□□□ 0.02
MSH6-204ENST00000445503 SLC12A5Q9H2X9 1139 aa15.17■□□□□ 0.02
MSH6-204ENST00000445503 KDM5CP41229 1560 aa15.16■□□□□ 0.02
MSH6-204ENST00000445503 MFAP1P55081 439 aaKnown RBP15.16■□□□□ 0.02
MSH6-204ENST00000445503 AMER1Q5JTC6 1135 aaPredicted RBP15.16■□□□□ 0.02
MSH6-204ENST00000445503 SPINK5Q9NQ38 1064 aaPredicted RBP15.16■□□□□ 0.02
MSH6-204ENST00000445503 ITSN2Q9NZM3 1697 aa15.16■□□□□ 0.02
MSH6-204ENST00000445503 FAM135AQ9P2D6 1515 aa15.16■□□□□ 0.02
MSH6-204ENST00000445503 ITPRIPQ8IWB1 547 aa15.15■□□□□ 0.02
MSH6-204ENST00000445503 RWDD1Q9H446 243 aaPredicted RBP15.15■□□□□ 0.02
MSH6-204ENST00000445503 MBD5Q9P267 1494 aa15.15■□□□□ 0.02
MSH6-204ENST00000445503 TCP11L2Q8N4U5 519 aa15.15■□□□□ 0.02
MSH6-204ENST00000445503 SMC4Q9NTJ3 1288 aa15.15■□□□□ 0.02
MSH6-204ENST00000445503 PMFBP1Q8TBY8 1022 aa15.14■□□□□ 0.01
MSH6-204ENST00000445503 MTHFSP49914 203 aa15.13■□□□□ 0.01
MSH6-204ENST00000445503 IGHDP01880 384 aa15.13■□□□□ 0.01
MSH6-204ENST00000445503 ARHGEF12Q9NZN5 1544 aa15.13■□□□□ 0.01
MSH6-204ENST00000445503 POGKQ9P215 609 aa15.12■□□□□ 0.01
MSH6-204ENST00000445503 MYH16Q9H6N6 1097 aa15.11■□□□□ 0.01
MSH6-204ENST00000445503 A2MP01023 1474 aa15.11■□□□□ 0.01
MSH6-204ENST00000445503 WWC1Q8IX03 1113 aa15.1■□□□□ 0.01
MSH6-204ENST00000445503 RUNDC1Q96C34 613 aa15.1■□□□□ 0.01
MSH6-204ENST00000445503 C8orf34Q49A92 452 aa15.1■□□□□ 0.01
MSH6-204ENST00000445503 ADGRF5Q8IZF2 1346 aa15.09■□□□□ 0.01
MSH6-204ENST00000445503 DMRT2Q9Y5R5 561 aa15.09■□□□□ 0.01
MSH6-204ENST00000445503 SYCP2Q9BX26 1530 aa15.09■□□□□ 0.01
MSH6-204ENST00000445503 EIF4G3O43432 1585 aaKnown RBP15.09■□□□□ 0.01
MSH6-204ENST00000445503 PDZRN3Q9UPQ7 1066 aa15.08■□□□□ 0
MSH6-204ENST00000445503 TSR2Q969E8 191 aaKnown RBP15.07■□□□□ 0
MSH6-204ENST00000445503 COL17A1Q9UMD9 1497 aaPredicted RBP15.07■□□□□ 0
MSH6-204ENST00000445503 PDE3AQ14432 1141 aa15.06■□□□□ 0
MSH6-204ENST00000445503 CABP2Q9NPB3 220 aa15.06■□□□□ 0
MSH6-204ENST00000445503 TNNQ9UQP3 1299 aa15.06■□□□□ 0
MSH6-204ENST00000445503 FOXD4L1Q9NU39 408 aa15.06■□□□□ 0
MSH6-204ENST00000445503 SHANK2Q9UPX8 1470 aa15.06■□□□□ 0
MSH6-204ENST00000445503 ZKSCAN2Q63HK3 967 aa15.06■□□□□ 0
MSH6-204ENST00000445503 CEP170Q5SW79 1584 aa15.06■□□□□ 0
MSH6-204ENST00000445503 ELL2O00472 640 aaPredicted RBP15.06■□□□□ 0
MSH6-204ENST00000445503 GGNBP2Q9H3C7 697 aa15.06■□□□□ 0
MSH6-204ENST00000445503 SCAPERQ9BY12 1400 aa15.05■□□□□ 0
MSH6-204ENST00000445503 HSCBQ8IWL3 235 aa15.05■□□□□ 0
MSH6-204ENST00000445503 ADGBQ8N7X0 1667 aa15.04■□□□□ -0
MSH6-204ENST00000445503 HSP90AB1P08238 724 aaKnown RBP15.04■□□□□ -0
MSH6-204ENST00000445503 DZIP1LQ8IYY4 767 aaKnown RBP15.04■□□□□ -0
MSH6-204ENST00000445503 CARD14Q9BXL6 1004 aa15.04■□□□□ -0
MSH6-204ENST00000445503 KDM2BQ8NHM5 1336 aa15.04■□□□□ -0
MSH6-204ENST00000445503 SEC24BO95487 1268 aa15.04■□□□□ -0
MSH6-204ENST00000445503 ABCC10Q5T3U5 1492 aa15.04■□□□□ -0
MSH6-204ENST00000445503 NKTRP30414 1462 aaKnown RBP15.03■□□□□ -0
MSH6-204ENST00000445503 STAC3Q96MF2 364 aa15.03■□□□□ -0
MSH6-204ENST00000445503 MINK1Q8N4C8 1332 aaPredicted RBP15.02■□□□□ -0
MSH6-204ENST00000445503 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.02□□□□□ -0.01
MSH6-204ENST00000445503 RARSP54136 660 aaKnown RBP15.02□□□□□ -0.01
MSH6-204ENST00000445503 BLMP54132 1417 aaPredicted RBP15.01□□□□□ -0.01
MSH6-204ENST00000445503 EXOSC9Q06265 439 aaKnown RBP15.01□□□□□ -0.01
MSH6-204ENST00000445503 GPRASP1Q5JY77 1395 aa15.01□□□□□ -0.01
MSH6-204ENST00000445503 APBB1O00213 710 aa15.01□□□□□ -0.01
MSH6-204ENST00000445503 SCAF11Q99590 1463 aaKnown RBP15□□□□□ -0.01
MSH6-204ENST00000445503 NGEFQ8N5V2 710 aa15□□□□□ -0.01
MSH6-204ENST00000445503 PLA2R1Q13018 1463 aa15□□□□□ -0.01
MSH6-204ENST00000445503 NUP160Q12769 1436 aa15□□□□□ -0.01
MSH6-204ENST00000445503 L1TD1Q5T7N2 865 aaKnown RBP15□□□□□ -0.01
MSH6-204ENST00000445503 NAP1L5Q96NT1 182 aaPredicted RBP15□□□□□ -0.01
MSH6-204ENST00000445503 NSD3Q9BZ95 1437 aa15□□□□□ -0.01
MSH6-204ENST00000445503 TRAPPC8Q9Y2L5 1435 aa15□□□□□ -0.01
MSH6-204ENST00000445503 NCLP19338 710 aaKnown RBP14.99□□□□□ -0.01
MSH6-204ENST00000445503 PCDHB15Q9Y5E8 787 aa14.99□□□□□ -0.01
MSH6-204ENST00000445503 MAGI2Q86UL8 1455 aa14.99□□□□□ -0.01
MSH6-204ENST00000445503 LNPKQ9C0E8 428 aa14.99□□□□□ -0.01
MSH6-204ENST00000445503 EVC2Q86UK5 1308 aa14.99□□□□□ -0.01
MSH6-204ENST00000445503 RIPK4P57078 832 aa14.99□□□□□ -0.01
MSH6-204ENST00000445503 PLPPR3Q6T4P5 718 aa14.98□□□□□ -0.01
MSH6-204ENST00000445503 GOLGA6L3A6NEY3 463 aa14.98□□□□□ -0.01
MSH6-204ENST00000445503 IPO8O15397 1037 aaKnown RBP14.98□□□□□ -0.01
MSH6-204ENST00000445503 RLBP1P12271 317 aa14.98□□□□□ -0.01
MSH6-204ENST00000445503 C22orf23Q9BZE7 217 aa14.98□□□□□ -0.01
MSH6-204ENST00000445503 ZMYM4Q5VZL5 1548 aa14.97□□□□□ -0.01
MSH6-204ENST00000445503 SOX12O15370 315 aa14.97□□□□□ -0.01
MSH6-204ENST00000445503 TRIM44Q96DX7 344 aaPredicted RBP14.96□□□□□ -0.01
MSH6-204ENST00000445503 ANKRD45Q5TZF3 282 aa14.96□□□□□ -0.01
MSH6-204ENST00000445503 ASXL1Q8IXJ9 1541 aa14.96□□□□□ -0.02
MSH6-204ENST00000445503 HDGFL2Q7Z4V5 671 aaPredicted RBP14.95□□□□□ -0.02
MSH6-204ENST00000445503 ANP32BQ92688 251 aaKnown RBP14.95□□□□□ -0.02
MSH6-204ENST00000445503 KDM5DQ9BY66 1539 aa14.95□□□□□ -0.02
MSH6-204ENST00000445503 TERF2IPQ9NYB0 399 aa14.94□□□□□ -0.02
MSH6-204ENST00000445503 VGFO15240 615 aaPredicted RBP14.94□□□□□ -0.02
MSH6-204ENST00000445503 MLECQ14165 292 aa14.94□□□□□ -0.02
MSH6-204ENST00000445503 MVPQ14764 893 aaKnown RBP14.94□□□□□ -0.02
MSH6-204ENST00000445503 NOB1Q9ULX3 412 aaKnown RBP14.94□□□□□ -0.02
MSH6-204ENST00000445503 DDX19BQ9UMR2 479 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms