RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 PRAG1Q86YV5 1406 aa32.85■■■□□ 2.85
CPSF4-204ENST00000436336 STAG3Q9UJ98 1225 aa32.85■■■□□ 2.85
CPSF4-204ENST00000436336 TRPM1Q7Z4N2 1603 aa32.82■■■□□ 2.84
CPSF4-204ENST00000436336 ZNF142P52746 1687 aaPredicted RBP32.78■■■□□ 2.84
CPSF4-204ENST00000436336 RALGAPBQ86X10 1494 aa32.78■■■□□ 2.84
CPSF4-204ENST00000436336 NRXN1Q9ULB1 1477 aa32.77■■■□□ 2.84
CPSF4-204ENST00000436336 KIAA1210Q9ULL0 1709 aa32.76■■■□□ 2.83
CPSF4-204ENST00000436336 CEP170BQ9Y4F5 1589 aaPredicted RBP32.75■■■□□ 2.83
CPSF4-204ENST00000436336 ZFYVE9O95405 1425 aa32.74■■■□□ 2.83
CPSF4-204ENST00000436336 VGFO15240 615 aaPredicted RBP32.71■■■□□ 2.83
CPSF4-204ENST00000436336 ADGRF5Q8IZF2 1346 aa32.71■■■□□ 2.83
CPSF4-204ENST00000436336 KDM4FA0A1W2PPD8 638 aa32.71■■■□□ 2.83
CPSF4-204ENST00000436336 RIMS2Q9UQ26 1411 aa32.7■■■□□ 2.82
CPSF4-204ENST00000436336 PIK3C2GO75747 1445 aa32.68■■■□□ 2.82
CPSF4-204ENST00000436336 LAMC1P11047 1609 aa32.67■■■□□ 2.82
CPSF4-204ENST00000436336 TMEM2Q9UHN6 1383 aa32.66■■■□□ 2.82
CPSF4-204ENST00000436336 SLIT1O75093 1534 aa32.64■■■□□ 2.82
CPSF4-204ENST00000436336 HDGFP51858 240 aaKnown RBP32.63■■■□□ 2.81
CPSF4-204ENST00000436336 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.63■■■□□ 2.81
CPSF4-204ENST00000436336 ROCK2O75116 1388 aaKnown RBP32.63■■■□□ 2.81
CPSF4-204ENST00000436336 NUTM2DQ5VT03 806 aaPredicted RBP32.63■■■□□ 2.81
CPSF4-204ENST00000436336 THEMISQ8N1K5 641 aaPredicted RBP32.63■■■□□ 2.81
CPSF4-204ENST00000436336 ARHGAP23Q9P227 1491 aa32.62■■■□□ 2.81
CPSF4-204ENST00000436336 GPRASP1Q5JY77 1395 aa32.61■■■□□ 2.81
CPSF4-204ENST00000436336 SETBP1Q9Y6X0 1596 aa32.57■■■□□ 2.8
CPSF4-204ENST00000436336 NBPF1Q3BBV0 1214 aa32.57■■■□□ 2.8
CPSF4-204ENST00000436336 CARD11Q9BXL7 1154 aa32.57■■■□□ 2.8
CPSF4-204ENST00000436336 CFAP70Q5T0N1 1121 aa32.54■■■□□ 2.8
CPSF4-204ENST00000436336 C14orf93Q9H972 538 aaKnown RBP32.54■■■□□ 2.8
CPSF4-204ENST00000436336 EIF4G2P78344 907 aaKnown RBP eCLIP32.54■■■□□ 2.8
CPSF4-204ENST00000436336 IQGAP1P46940 1657 aa32.52■■■□□ 2.8
CPSF4-204ENST00000436336 ZNF316A6NFI3 1004 aaPredicted RBP32.51■■■□□ 2.8
CPSF4-204ENST00000436336 NRXN3Q9Y4C0 1643 aa32.51■■■□□ 2.8
CPSF4-204ENST00000436336 EID1Q9Y6B2 187 aa32.51■■■□□ 2.79
CPSF4-204ENST00000436336 SETD1AO15047 1707 aaKnown RBP32.49■■■□□ 2.79
CPSF4-204ENST00000436336 USP47Q96K76 1375 aa32.49■■■□□ 2.79
CPSF4-204ENST00000436336 ALKQ9UM73 1620 aa32.49■■■□□ 2.79
CPSF4-204ENST00000436336 ADGRB1O14514 1584 aa32.48■■■□□ 2.79
CPSF4-204ENST00000436336 TXNDC2Q86VQ3 553 aa32.48■■■□□ 2.79
CPSF4-204ENST00000436336 HSPA5P11021 654 aaKnown RBP32.47■■■□□ 2.79
CPSF4-204ENST00000436336 LTKP29376 864 aa32.47■■■□□ 2.79
CPSF4-204ENST00000436336 SCAF11Q99590 1463 aaKnown RBP32.46■■■□□ 2.79
CPSF4-204ENST00000436336 PLEKHG1Q9ULL1 1385 aa32.46■■■□□ 2.79
CPSF4-204ENST00000436336 POLR1AO95602 1720 aaPredicted RBP32.43■■■□□ 2.78
CPSF4-204ENST00000436336 ASXL1Q8IXJ9 1541 aa32.41■■■□□ 2.78
CPSF4-204ENST00000436336 HIRIP3Q9BW71 556 aaPredicted RBP32.4■■■□□ 2.78
CPSF4-204ENST00000436336 ANKLE2Q86XL3 938 aa32.38■■■□□ 2.77
CPSF4-204ENST00000436336 SENP3Q9H4L4 574 aaPredicted RBP32.38■■■□□ 2.77
CPSF4-204ENST00000436336 ADAMTS13Q76LX8 1427 aa32.35■■■□□ 2.77
CPSF4-204ENST00000436336 TMEM132EQ6IEE7 984 aa32.35■■■□□ 2.77
CPSF4-204ENST00000436336 BCANQ96GW7 911 aa32.35■■■□□ 2.77
CPSF4-204ENST00000436336 DIP2AQ14689 1571 aa32.35■■■□□ 2.77
CPSF4-204ENST00000436336 EIF3AQ14152 1382 aaKnown RBP32.34■■■□□ 2.77
CPSF4-204ENST00000436336 MED14O60244 1454 aa32.33■■■□□ 2.77
CPSF4-204ENST00000436336 ARHGEF28Q8N1W1 1705 aaKnown RBP32.33■■■□□ 2.77
CPSF4-204ENST00000436336 LMTK3Q96Q04 1460 aa32.32■■■□□ 2.76
CPSF4-204ENST00000436336 ST20-MTHFSA0A0A6YYL1 179 aa32.31■■■□□ 2.76
CPSF4-204ENST00000436336 YTHDC2Q9H6S0 1430 aaKnown RBP32.29■■■□□ 2.76
CPSF4-204ENST00000436336 KNDC1Q76NI1 1749 aa32.27■■■□□ 2.76
CPSF4-204ENST00000436336 METP08581 1390 aa32.25■■■□□ 2.75
CPSF4-204ENST00000436336 TRAK1Q9UPV9 953 aa32.25■■■□□ 2.75
CPSF4-204ENST00000436336 TBX22Q9Y458 520 aa32.25■■■□□ 2.75
CPSF4-204ENST00000436336 LRPPRCP42704 1394 aaKnown RBP32.23■■■□□ 2.75
CPSF4-204ENST00000436336 QRICH2Q9H0J4 1663 aa32.23■■■□□ 2.75
CPSF4-204ENST00000436336 NPHP4O75161 1426 aaPredicted RBP32.23■■■□□ 2.75
CPSF4-204ENST00000436336 DLC1Q96QB1 1528 aa32.22■■■□□ 2.75
CPSF4-204ENST00000436336 SLC26A8Q96RN1 970 aa32.22■■■□□ 2.75
CPSF4-204ENST00000436336 NCKAP5LQ9HCH0 1330 aa32.19■■■□□ 2.74
CPSF4-204ENST00000436336 TESK2Q96S53 571 aa32.19■■■□□ 2.74
CPSF4-204ENST00000436336 STK26Q9P289 416 aa32.19■■■□□ 2.74
CPSF4-204ENST00000436336 ABCC11Q96J66 1382 aa32.19■■■□□ 2.74
CPSF4-204ENST00000436336 CENPJQ9HC77 1338 aaPredicted RBP32.17■■■□□ 2.74
CPSF4-204ENST00000436336 HSPA2P54652 639 aa32.17■■■□□ 2.74
CPSF4-204ENST00000436336 TECPR2O15040 1411 aa32.16■■■□□ 2.74
CPSF4-204ENST00000436336 CPS1P31327 1500 aa32.16■■■□□ 2.74
CPSF4-204ENST00000436336 PIK3R4Q99570 1358 aa32.16■■■□□ 2.74
CPSF4-204ENST00000436336 SBNO2Q9Y2G9 1366 aa32.15■■■□□ 2.74
CPSF4-204ENST00000436336 CHD2O14647 1828 aaKnown RBP32.15■■■□□ 2.74
CPSF4-204ENST00000436336 STRCQ7RTU9 1775 aa32.14■■■□□ 2.74
CPSF4-204ENST00000436336 C11orf95C9JLR9 678 aaPredicted RBP32.13■■■□□ 2.73
CPSF4-204ENST00000436336 SLC24A1O60721 1099 aa32.13■■■□□ 2.73
CPSF4-204ENST00000436336 WASHC2AQ641Q2 1341 aa32.12■■■□□ 2.73
CPSF4-204ENST00000436336 XRN1Q8IZH2 1706 aaKnown RBP32.12■■■□□ 2.73
CPSF4-204ENST00000436336 CCDC7Q96M83 1385 aa32.12■■■□□ 2.73
CPSF4-204ENST00000436336 PTPRUQ92729 1446 aa32.11■■■□□ 2.73
CPSF4-204ENST00000436336 TMF1P82094 1093 aa32.09■■■□□ 2.73
CPSF4-204ENST00000436336 SIRT1Q96EB6 747 aa32.09■■■□□ 2.73
CPSF4-204ENST00000436336 KIF7Q2M1P5 1343 aa32.08■■■□□ 2.73
CPSF4-204ENST00000436336 FAM135BQ49AJ0 1406 aa32.08■■■□□ 2.73
CPSF4-204ENST00000436336 PRAM1Q96QH2 718 aa32.07■■■□□ 2.72
CPSF4-204ENST00000436336 POGKQ9P215 609 aa32.06■■■□□ 2.72
CPSF4-204ENST00000436336 DISP3Q9P2K9 1392 aa32.06■■■□□ 2.72
CPSF4-204ENST00000436336 AMOTL2Q9Y2J4 779 aa32.04■■■□□ 2.72
CPSF4-204ENST00000436336 PTCH1Q13635 1447 aa32.03■■■□□ 2.72
CPSF4-204ENST00000436336 ROBO2Q9HCK4 1378 aa32.01■■■□□ 2.71
CPSF4-204ENST00000436336 CDCA8Q53HL2 280 aa32■■■□□ 2.71
CPSF4-204ENST00000436336 NWD1Q149M9 1564 aa31.99■■■□□ 2.71
CPSF4-204ENST00000436336 WAPLQ7Z5K2 1190 aa31.99■■■□□ 2.71
CPSF4-204ENST00000436336 PLEKHH1Q9ULM0 1364 aa31.99■■■□□ 2.71
CPSF4-204ENST00000436336 SAFB2Q14151 953 aaKnown RBP eCLIP31.98■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms