RNA–Protein interactions for RNA: ENST00000434813.3

CLK1-205, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 2,026 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-205ENST00000434813 RAPGEF3O95398 923 aa25.1■■□□□ 1.61
CLK1-205ENST00000434813 RNF123Q5XPI4 1314 aa25.09■■□□□ 1.61
CLK1-205ENST00000434813 RBM19Q9Y4C8 960 aaKnown RBP25.08■■□□□ 1.61
CLK1-205ENST00000434813 KIAA1210Q9ULL0 1709 aa25.08■■□□□ 1.61
CLK1-205ENST00000434813 SCAF11Q99590 1463 aaKnown RBP25.06■■□□□ 1.6
CLK1-205ENST00000434813 EFCAB6Q5THR3 1501 aa25.06■■□□□ 1.6
CLK1-205ENST00000434813 ZMYM4Q5VZL5 1548 aa25.05■■□□□ 1.6
CLK1-205ENST00000434813 INSRP06213 1382 aa25.03■■□□□ 1.6
CLK1-205ENST00000434813 SYNMO15061 1565 aa25.02■■□□□ 1.6
CLK1-205ENST00000434813 LMTK2Q8IWU2 1503 aa25.02■■□□□ 1.6
CLK1-205ENST00000434813 MYOM2P54296 1465 aa25.01■■□□□ 1.59
CLK1-205ENST00000434813 TSPOAP1O95153 1857 aa25.01■■□□□ 1.59
CLK1-205ENST00000434813 PANK3Q9H999 370 aa25■■□□□ 1.59
CLK1-205ENST00000434813 ABCA6Q8N139 1617 aa25■■□□□ 1.59
CLK1-205ENST00000434813 PPRC1Q5VV67 1664 aaKnown RBP25■■□□□ 1.59
CLK1-205ENST00000434813 RICTORQ6R327 1708 aa24.99■■□□□ 1.59
CLK1-205ENST00000434813 FRMPD1Q5SYB0 1578 aa24.99■■□□□ 1.59
CLK1-205ENST00000434813 IFT172Q9UG01 1749 aa24.98■■□□□ 1.59
CLK1-205ENST00000434813 KIF1BO60333 1816 aa24.98■■□□□ 1.59
CLK1-205ENST00000434813 UGGT1Q9NYU2 1555 aa24.96■■□□□ 1.59
CLK1-205ENST00000434813 EIF3AQ14152 1382 aaKnown RBP24.96■■□□□ 1.59
CLK1-205ENST00000434813 BLMP54132 1417 aaPredicted RBP24.96■■□□□ 1.59
CLK1-205ENST00000434813 B4GALNT3Q6L9W6 998 aa24.95■■□□□ 1.58
CLK1-205ENST00000434813 GGT6Q6P531 493 aa24.95■■□□□ 1.58
CLK1-205ENST00000434813 MYOM1P52179 1685 aa24.94■■□□□ 1.58
CLK1-205ENST00000434813 CC2D1BQ5T0F9 858 aaKnown RBP24.94■■□□□ 1.58
CLK1-205ENST00000434813 DIP2CQ9Y2E4 1556 aa24.94■■□□□ 1.58
CLK1-205ENST00000434813 CDCA8Q53HL2 280 aa24.93■■□□□ 1.58
CLK1-205ENST00000434813 MROH2AA6NES4 1674 aa24.93■■□□□ 1.58
CLK1-205ENST00000434813 PDE3BQ13370 1112 aa24.9■■□□□ 1.58
CLK1-205ENST00000434813 KDM5AP29375 1690 aaKnown RBP24.9■■□□□ 1.58
CLK1-205ENST00000434813 SENP3-EIF4A1A0A087X0R7 540 aa24.9■■□□□ 1.58
CLK1-205ENST00000434813 NRXN1Q9ULB1 1477 aa24.89■■□□□ 1.58
CLK1-205ENST00000434813 ADGRB3O60242 1522 aa24.89■■□□□ 1.57
CLK1-205ENST00000434813 YEATS2Q9ULM3 1422 aa24.88■■□□□ 1.57
CLK1-205ENST00000434813 MYO3AQ8NEV4 1616 aa24.86■■□□□ 1.57
CLK1-205ENST00000434813 ASXL1Q8IXJ9 1541 aa24.86■■□□□ 1.57
CLK1-205ENST00000434813 KNSTRNQ9Y448 316 aa24.83■■□□□ 1.57
CLK1-205ENST00000434813 NPC1L1Q9UHC9 1359 aa24.82■■□□□ 1.56
CLK1-205ENST00000434813 FANCIQ9NVI1 1328 aa24.82■■□□□ 1.56
CLK1-205ENST00000434813 AMER1Q5JTC6 1135 aaPredicted RBP24.82■■□□□ 1.56
CLK1-205ENST00000434813 ANP32EQ9BTT0 268 aa24.82■■□□□ 1.56
CLK1-205ENST00000434813 SETBP1Q9Y6X0 1596 aa24.81■■□□□ 1.56
CLK1-205ENST00000434813 ABCC3O15438 1527 aa24.81■■□□□ 1.56
CLK1-205ENST00000434813 SLC24A1O60721 1099 aa24.81■■□□□ 1.56
CLK1-205ENST00000434813 NPATQ14207 1427 aa24.8■■□□□ 1.56
CLK1-205ENST00000434813 ADGRF5Q8IZF2 1346 aa24.8■■□□□ 1.56
CLK1-205ENST00000434813 ERVK-7P63135 1459 aa24.8■■□□□ 1.56
CLK1-205ENST00000434813 RRP1P56182 461 aaKnown RBP24.79■■□□□ 1.56
CLK1-205ENST00000434813 PIK3C2GO75747 1445 aa24.79■■□□□ 1.56
CLK1-205ENST00000434813 CFAP70Q5T0N1 1121 aa24.78■■□□□ 1.56
CLK1-205ENST00000434813 PPLO60437 1756 aa24.78■■□□□ 1.56
CLK1-205ENST00000434813 RCAN3Q9UKA8 241 aa24.78■■□□□ 1.56
CLK1-205ENST00000434813 SBNO2Q9Y2G9 1366 aa24.77■■□□□ 1.56
CLK1-205ENST00000434813 PPP2R1AP30153 589 aa24.77■■□□□ 1.56
CLK1-205ENST00000434813 CCDC136Q96JN2 1154 aa24.76■■□□□ 1.55
CLK1-205ENST00000434813 NOS1P29475 1434 aa24.75■■□□□ 1.55
CLK1-205ENST00000434813 SALL2Q9Y467 1007 aaPredicted RBP24.74■■□□□ 1.55
CLK1-205ENST00000434813 CAMSAP1Q5T5Y3 1602 aa24.74■■□□□ 1.55
CLK1-205ENST00000434813 ZC3H13Q5T200 1668 aaKnown RBP24.73■■□□□ 1.55
CLK1-205ENST00000434813 CDCA7LQ96GN5 454 aa24.69■■□□□ 1.54
CLK1-205ENST00000434813 ADGRB1O14514 1584 aa24.69■■□□□ 1.54
CLK1-205ENST00000434813 ADAMTS8Q9UP79 889 aa24.69■■□□□ 1.54
CLK1-205ENST00000434813 PIK3C2BO00750 1634 aa24.69■■□□□ 1.54
CLK1-205ENST00000434813 REREQ9P2R6 1566 aa24.68■■□□□ 1.54
CLK1-205ENST00000434813 ARHGAP31Q2M1Z3 1444 aa24.68■■□□□ 1.54
CLK1-205ENST00000434813 CHGAP10645 457 aaKnown RBP24.68■■□□□ 1.54
CLK1-205ENST00000434813 SIGLEC1Q9BZZ2 1709 aa24.67■■□□□ 1.54
CLK1-205ENST00000434813 WDR43Q15061 677 aaKnown RBP eCLIP24.66■■□□□ 1.54
CLK1-205ENST00000434813 QRICH2Q9H0J4 1663 aa24.65■■□□□ 1.54
CLK1-205ENST00000434813 RPGRIP1LQ68CZ1 1315 aa24.65■■□□□ 1.54
CLK1-205ENST00000434813 MSH5O43196 834 aa24.64■■□□□ 1.54
CLK1-205ENST00000434813 AGLP35573 1532 aa24.64■■□□□ 1.54
CLK1-205ENST00000434813 CFAP65Q6ZU64 1925 aaKnown RBP24.64■■□□□ 1.53
CLK1-205ENST00000434813 CENPJQ9HC77 1338 aaPredicted RBP24.63■■□□□ 1.53
CLK1-205ENST00000434813 C14orf93Q9H972 538 aaKnown RBP24.62■■□□□ 1.53
CLK1-205ENST00000434813 PPP6R1Q9UPN7 881 aa24.62■■□□□ 1.53
CLK1-205ENST00000434813 ARHGEF40Q8TER5 1519 aa24.61■■□□□ 1.53
CLK1-205ENST00000434813 PLEKHH1Q9ULM0 1364 aa24.61■■□□□ 1.53
CLK1-205ENST00000434813 EXOC6Q8TAG9 804 aa24.61■■□□□ 1.53
CLK1-205ENST00000434813 ZNF521Q96K83 1311 aa24.6■■□□□ 1.53
CLK1-205ENST00000434813 NEXMIFQ5QGS0 1516 aa24.58■■□□□ 1.53
CLK1-205ENST00000434813 CARD14Q9BXL6 1004 aa24.57■■□□□ 1.52
CLK1-205ENST00000434813 SLC52A1Q9NWF4 448 aa24.56■■□□□ 1.52
CLK1-205ENST00000434813 USP32Q8NFA0 1604 aa24.55■■□□□ 1.52
CLK1-205ENST00000434813 ARHGEF28Q8N1W1 1705 aaKnown RBP24.53■■□□□ 1.52
CLK1-205ENST00000434813 TRAK1Q9UPV9 953 aa24.52■■□□□ 1.52
CLK1-205ENST00000434813 MLECQ14165 292 aa24.52■■□□□ 1.52
CLK1-205ENST00000434813 DUSP27Q5VZP5 1158 aa24.51■■□□□ 1.51
CLK1-205ENST00000434813 PREX1Q8TCU6 1659 aa24.51■■□□□ 1.51
CLK1-205ENST00000434813 IDI1Q13907 227 aa24.51■■□□□ 1.51
CLK1-205ENST00000434813 NSD3Q9BZ95 1437 aa24.5■■□□□ 1.51
CLK1-205ENST00000434813 GOLGA2Q08379 1002 aa24.5■■□□□ 1.51
CLK1-205ENST00000434813 POLR3AO14802 1390 aaPredicted RBP24.5■■□□□ 1.51
CLK1-205ENST00000434813 ESF1Q9H501 851 aaKnown RBP24.49■■□□□ 1.51
CLK1-205ENST00000434813 ZFYVE9O95405 1425 aa24.48■■□□□ 1.51
CLK1-205ENST00000434813 VGFO15240 615 aaPredicted RBP24.47■■□□□ 1.51
CLK1-205ENST00000434813 CLTCQ00610 1675 aaKnown RBP24.46■■□□□ 1.51
CLK1-205ENST00000434813 PLIN1O60240 522 aa24.46■■□□□ 1.51
CLK1-205ENST00000434813 FBXO31Q5XUX0 539 aaPredicted RBP24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms