RNA–Protein interactions for RNA: ENST00000430548.5

AC004540.1-202, humanhuman

TSL 4

Gene AC004540.1, Length 576 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC004540.1-202ENST00000430548 SLC52A1Q9NWF4 448 aa28.92■■■□□ 2.22
AC004540.1-202ENST00000430548 ROCK1Q13464 1354 aa28.89■■■□□ 2.22
AC004540.1-202ENST00000430548 ROBO1Q9Y6N7 1651 aa28.88■■■□□ 2.21
AC004540.1-202ENST00000430548 TMEM94Q12767 1356 aa28.88■■■□□ 2.21
AC004540.1-202ENST00000430548 KCNA6P17658 529 aa28.85■■■□□ 2.21
AC004540.1-202ENST00000430548 FAM135BQ49AJ0 1406 aa28.85■■■□□ 2.21
AC004540.1-202ENST00000430548 PLEKHG1Q9ULL1 1385 aa28.84■■■□□ 2.21
AC004540.1-202ENST00000430548 DIP2AQ14689 1571 aa28.81■■■□□ 2.2
AC004540.1-202ENST00000430548 RIMS2Q9UQ26 1411 aa28.81■■■□□ 2.2
AC004540.1-202ENST00000430548 SLC26A8Q96RN1 970 aa28.81■■■□□ 2.2
AC004540.1-202ENST00000430548 SPHKAPQ2M3C7 1700 aa28.77■■■□□ 2.2
AC004540.1-202ENST00000430548 PHF23Q9BUL5 403 aaPredicted RBP28.73■■■□□ 2.19
AC004540.1-202ENST00000430548 SENP3Q9H4L4 574 aaPredicted RBP28.72■■■□□ 2.19
AC004540.1-202ENST00000430548 ADAMTS13Q76LX8 1427 aa28.71■■■□□ 2.19
AC004540.1-202ENST00000430548 PROSER2Q86WR7 435 aaPredicted RBP28.71■■■□□ 2.19
AC004540.1-202ENST00000430548 PHLPP1O60346 1717 aa28.7■■■□□ 2.19
AC004540.1-202ENST00000430548 MSH6P52701 1360 aa28.69■■■□□ 2.18
AC004540.1-202ENST00000430548 NRXN3Q9Y4C0 1643 aa28.68■■■□□ 2.18
AC004540.1-202ENST00000430548 NCOA3Q9Y6Q9 1424 aa28.67■■■□□ 2.18
AC004540.1-202ENST00000430548 TRPM2O94759 1503 aa28.66■■■□□ 2.18
AC004540.1-202ENST00000430548 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.66■■■□□ 2.18
AC004540.1-202ENST00000430548 PPP1R15AO75807 674 aaPredicted RBP28.65■■■□□ 2.18
AC004540.1-202ENST00000430548 HDGFP51858 240 aaKnown RBP28.65■■■□□ 2.18
AC004540.1-202ENST00000430548 RBM33Q96EV2 1170 aaKnown RBP28.65■■■□□ 2.18
AC004540.1-202ENST00000430548 COL16A1Q07092 1604 aaPredicted RBP28.65■■■□□ 2.18
AC004540.1-202ENST00000430548 NUP155O75694 1391 aa28.64■■■□□ 2.18
AC004540.1-202ENST00000430548 PIK3R4Q99570 1358 aa28.64■■■□□ 2.18
AC004540.1-202ENST00000430548 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.64■■■□□ 2.18
AC004540.1-202ENST00000430548 TBX22Q9Y458 520 aa28.64■■■□□ 2.18
AC004540.1-202ENST00000430548 XRN1Q8IZH2 1706 aaKnown RBP28.63■■■□□ 2.17
AC004540.1-202ENST00000430548 SETBP1Q9Y6X0 1596 aa28.62■■■□□ 2.17
AC004540.1-202ENST00000430548 BCANQ96GW7 911 aa28.62■■■□□ 2.17
AC004540.1-202ENST00000430548 RGS17Q9UGC6 210 aaPredicted RBP28.6■■■□□ 2.17
AC004540.1-202ENST00000430548 RRBP1Q9P2E9 1410 aaKnown RBP28.57■■■□□ 2.16
AC004540.1-202ENST00000430548 CLTCL1P53675 1640 aa28.57■■■□□ 2.16
AC004540.1-202ENST00000430548 AHDC1Q5TGY3 1603 aaPredicted RBP28.57■■■□□ 2.16
AC004540.1-202ENST00000430548 CHGAP10645 457 aaKnown RBP28.55■■■□□ 2.16
AC004540.1-202ENST00000430548 SLAIN2Q9P270 581 aa28.54■■■□□ 2.16
AC004540.1-202ENST00000430548 PTPRUQ92729 1446 aa28.53■■■□□ 2.16
AC004540.1-202ENST00000430548 KIF1BO60333 1816 aa28.53■■■□□ 2.16
AC004540.1-202ENST00000430548 SHPRHQ149N8 1683 aa28.53■■■□□ 2.16
AC004540.1-202ENST00000430548 NEXMIFQ5QGS0 1516 aa28.52■■■□□ 2.16
AC004540.1-202ENST00000430548 ITGAEP38570 1179 aa28.51■■■□□ 2.15
AC004540.1-202ENST00000430548 NUTM2DQ5VT03 806 aaPredicted RBP28.5■■■□□ 2.15
AC004540.1-202ENST00000430548 DCCP43146 1447 aa28.49■■■□□ 2.15
AC004540.1-202ENST00000430548 JCADQ9P266 1359 aa28.49■■■□□ 2.15
AC004540.1-202ENST00000430548 NAIPQ13075 1403 aa28.47■■■□□ 2.15
AC004540.1-202ENST00000430548 SETD1AO15047 1707 aaKnown RBP28.46■■■□□ 2.15
AC004540.1-202ENST00000430548 NHSL1Q5SYE7 1610 aa28.44■■■□□ 2.14
AC004540.1-202ENST00000430548 NALCNQ8IZF0 1738 aa28.43■■■□□ 2.14
AC004540.1-202ENST00000430548 PPARGC1BQ86YN6 1023 aaKnown RBP28.43■■■□□ 2.14
AC004540.1-202ENST00000430548 CADPS2Q86UW7 1296 aa28.42■■■□□ 2.14
AC004540.1-202ENST00000430548 C19orf44Q9H6X5 657 aa28.42■■■□□ 2.14
AC004540.1-202ENST00000430548 LRP6O75581 1613 aa28.42■■■□□ 2.14
AC004540.1-202ENST00000430548 AMOTL2Q9Y2J4 779 aa28.4■■■□□ 2.14
AC004540.1-202ENST00000430548 POTEAQ6S8J7 498 aa28.39■■■□□ 2.14
AC004540.1-202ENST00000430548 ASXL1Q8IXJ9 1541 aa28.38■■■□□ 2.13
AC004540.1-202ENST00000430548 C14orf37Q86TY3 774 aa28.38■■■□□ 2.13
AC004540.1-202ENST00000430548 HFM1A2PYH4 1435 aa28.37■■■□□ 2.13
AC004540.1-202ENST00000430548 PPLO60437 1756 aa28.36■■■□□ 2.13
AC004540.1-202ENST00000430548 METP08581 1390 aa28.36■■■□□ 2.13
AC004540.1-202ENST00000430548 MST1RQ04912 1400 aa28.35■■■□□ 2.13
AC004540.1-202ENST00000430548 ATF3P18847 181 aa28.35■■■□□ 2.13
AC004540.1-202ENST00000430548 SPATA31A6Q5VVP1 1343 aa28.34■■■□□ 2.13
AC004540.1-202ENST00000430548 ADGRL3Q9HAR2 1447 aa28.34■■■□□ 2.13
AC004540.1-202ENST00000430548 PRAG1Q86YV5 1406 aa28.32■■■□□ 2.12
AC004540.1-202ENST00000430548 LAMC1P11047 1609 aa28.31■■■□□ 2.12
AC004540.1-202ENST00000430548 ZNF326Q5BKZ1 582 aaKnown RBP28.3■■■□□ 2.12
AC004540.1-202ENST00000430548 BRINP3Q76B58 766 aa28.3■■■□□ 2.12
AC004540.1-202ENST00000430548 PTCH1Q13635 1447 aa28.29■■■□□ 2.12
AC004540.1-202ENST00000430548 SETD5Q9C0A6 1442 aa28.26■■■□□ 2.12
AC004540.1-202ENST00000430548 IFT172Q9UG01 1749 aa28.24■■■□□ 2.11
AC004540.1-202ENST00000430548 C1orf167Q5SNV9 1468 aa28.15■■■□□ 2.1
AC004540.1-202ENST00000430548 RPGRIP1LQ68CZ1 1315 aa28.15■■■□□ 2.1
AC004540.1-202ENST00000430548 ROBO2Q9HCK4 1378 aa28.14■■■□□ 2.1
AC004540.1-202ENST00000430548 CDC42BPGQ6DT37 1551 aa28.13■■■□□ 2.09
AC004540.1-202ENST00000430548 VGFO15240 615 aaPredicted RBP28.13■■■□□ 2.09
AC004540.1-202ENST00000430548 ZNF772Q68DY9 489 aaPredicted RBP28.13■■■□□ 2.09
AC004540.1-202ENST00000430548 KNDC1Q76NI1 1749 aa28.12■■■□□ 2.09
AC004540.1-202ENST00000430548 MEX3CQ5U5Q3 659 aaKnown RBP28.12■■■□□ 2.09
AC004540.1-202ENST00000430548 CDK12Q9NYV4 1490 aaPredicted RBP28.11■■■□□ 2.09
AC004540.1-202ENST00000430548 TRIM52Q96A61 297 aa28.11■■■□□ 2.09
AC004540.1-202ENST00000430548 SLC4A1APQ9BWU0 796 aaKnown RBP28.11■■■□□ 2.09
AC004540.1-202ENST00000430548 PNPLA6Q8IY17 1366 aa28.11■■■□□ 2.09
AC004540.1-202ENST00000430548 COL22A1Q8NFW1 1626 aaPredicted RBP28.08■■■□□ 2.09
AC004540.1-202ENST00000430548 SPATA31E1Q6ZUB1 1445 aa28.07■■■□□ 2.08
AC004540.1-202ENST00000430548 LRRC59Q96AG4 307 aaKnown RBP28.06■■■□□ 2.08
AC004540.1-202ENST00000430548 CCDC144AA2RUR9 1427 aa28.04■■■□□ 2.08
AC004540.1-202ENST00000430548 TECPR2O15040 1411 aa28.03■■■□□ 2.08
AC004540.1-202ENST00000430548 DDX17Q92841 729 aaKnown RBP28.02■■■□□ 2.08
AC004540.1-202ENST00000430548 NUTM2BA6NNL0 878 aaPredicted RBP28.01■■■□□ 2.07
AC004540.1-202ENST00000430548 NUTM2EB1AL46 878 aaPredicted RBP28.01■■■□□ 2.07
AC004540.1-202ENST00000430548 NUTM2AQ8IVF1 878 aaPredicted RBP28.01■■■□□ 2.07
AC004540.1-202ENST00000430548 AFF2P51816 1311 aa28■■■□□ 2.07
AC004540.1-202ENST00000430548 MARF1Q9Y4F3 1742 aaKnown RBP28■■■□□ 2.07
AC004540.1-202ENST00000430548 SOS2Q07890 1332 aaPredicted RBP27.99■■■□□ 2.07
AC004540.1-202ENST00000430548 PIK3C2GO75747 1445 aa27.97■■■□□ 2.07
AC004540.1-202ENST00000430548 FMN2Q9NZ56 1722 aa27.97■■■□□ 2.07
AC004540.1-202ENST00000430548 FOXD1Q16676 465 aa27.96■■■□□ 2.07
AC004540.1-202ENST00000430548 ANKRD30BQ9BXX2 1392 aa27.96■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms