RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 PPARGC1BQ86YN6 1023 aaKnown RBP22.3■■□□□ 1.16
SDC1-204ENST00000429035 IQGAP3Q86VI3 1631 aa22.29■■□□□ 1.16
SDC1-204ENST00000429035 PPP1R15AO75807 674 aaPredicted RBP22.29■■□□□ 1.16
SDC1-204ENST00000429035 CHGAP10645 457 aaKnown RBP22.29■■□□□ 1.16
SDC1-204ENST00000429035 NWD1Q149M9 1564 aa22.29■■□□□ 1.16
SDC1-204ENST00000429035 TMEM131LA2VDJ0 1609 aa22.28■■□□□ 1.16
SDC1-204ENST00000429035 TMEM94Q12767 1356 aa22.28■■□□□ 1.16
SDC1-204ENST00000429035 ROCK1Q13464 1354 aa22.26■■□□□ 1.15
SDC1-204ENST00000429035 RIMS2Q9UQ26 1411 aa22.26■■□□□ 1.15
SDC1-204ENST00000429035 RBM33Q96EV2 1170 aaKnown RBP22.26■■□□□ 1.15
SDC1-204ENST00000429035 KCNA6P17658 529 aa22.25■■□□□ 1.15
SDC1-204ENST00000429035 NKTRP30414 1462 aaKnown RBP22.25■■□□□ 1.15
SDC1-204ENST00000429035 ZFYVE9O95405 1425 aa22.24■■□□□ 1.15
SDC1-204ENST00000429035 PROSER2Q86WR7 435 aaPredicted RBP22.24■■□□□ 1.15
SDC1-204ENST00000429035 ROBO1Q9Y6N7 1651 aa22.23■■□□□ 1.15
SDC1-204ENST00000429035 PLEKHG1Q9ULL1 1385 aa22.22■■□□□ 1.15
SDC1-204ENST00000429035 CHD2O14647 1828 aaKnown RBP22.22■■□□□ 1.15
SDC1-204ENST00000429035 NUP155O75694 1391 aa22.2■■□□□ 1.14
SDC1-204ENST00000429035 SPHKAPQ2M3C7 1700 aa22.18■■□□□ 1.14
SDC1-204ENST00000429035 MSH6P52701 1360 aa22.18■■□□□ 1.14
SDC1-204ENST00000429035 NUTM2DQ5VT03 806 aaPredicted RBP22.18■■□□□ 1.14
SDC1-204ENST00000429035 HDGFP51858 240 aaKnown RBP22.17■■□□□ 1.14
SDC1-204ENST00000429035 FAM135BQ49AJ0 1406 aa22.15■■□□□ 1.14
SDC1-204ENST00000429035 DIP2AQ14689 1571 aa22.15■■□□□ 1.14
SDC1-204ENST00000429035 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.14■■□□□ 1.13
SDC1-204ENST00000429035 PHLPP1O60346 1717 aa22.13■■□□□ 1.13
SDC1-204ENST00000429035 C14orf37Q86TY3 774 aa22.11■■□□□ 1.13
SDC1-204ENST00000429035 ADAMTS13Q76LX8 1427 aa22.09■■□□□ 1.13
SDC1-204ENST00000429035 TRPM2O94759 1503 aa22.09■■□□□ 1.13
SDC1-204ENST00000429035 TBX22Q9Y458 520 aa22.06■■□□□ 1.12
SDC1-204ENST00000429035 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.06■■□□□ 1.12
SDC1-204ENST00000429035 CLTCL1P53675 1640 aa22.05■■□□□ 1.12
SDC1-204ENST00000429035 ZNF326Q5BKZ1 582 aaKnown RBP22.04■■□□□ 1.12
SDC1-204ENST00000429035 KIF1BO60333 1816 aa22.03■■□□□ 1.12
SDC1-204ENST00000429035 NRXN3Q9Y4C0 1643 aa22.03■■□□□ 1.12
SDC1-204ENST00000429035 RRBP1Q9P2E9 1410 aaKnown RBP22.03■■□□□ 1.12
SDC1-204ENST00000429035 SLAIN2Q9P270 581 aa22.02■■□□□ 1.12
SDC1-204ENST00000429035 PIK3R4Q99570 1358 aa22.01■■□□□ 1.11
SDC1-204ENST00000429035 COL16A1Q07092 1604 aaPredicted RBP22■■□□□ 1.11
SDC1-204ENST00000429035 SETBP1Q9Y6X0 1596 aa21.99■■□□□ 1.11
SDC1-204ENST00000429035 XRN1Q8IZH2 1706 aaKnown RBP21.99■■□□□ 1.11
SDC1-204ENST00000429035 PTPRUQ92729 1446 aa21.98■■□□□ 1.11
SDC1-204ENST00000429035 NCOA3Q9Y6Q9 1424 aa21.98■■□□□ 1.11
SDC1-204ENST00000429035 NAIPQ13075 1403 aa21.97■■□□□ 1.11
SDC1-204ENST00000429035 ATF3P18847 181 aa21.97■■□□□ 1.11
SDC1-204ENST00000429035 RGS17Q9UGC6 210 aaPredicted RBP21.97■■□□□ 1.11
SDC1-204ENST00000429035 AMOTL2Q9Y2J4 779 aa21.97■■□□□ 1.11
SDC1-204ENST00000429035 NEXMIFQ5QGS0 1516 aa21.96■■□□□ 1.11
SDC1-204ENST00000429035 JCADQ9P266 1359 aa21.96■■□□□ 1.11
SDC1-204ENST00000429035 CADPS2Q86UW7 1296 aa21.95■■□□□ 1.1
SDC1-204ENST00000429035 TRIM52Q96A61 297 aa21.94■■□□□ 1.1
SDC1-204ENST00000429035 AHDC1Q5TGY3 1603 aaPredicted RBP21.93■■□□□ 1.1
SDC1-204ENST00000429035 C19orf44Q9H6X5 657 aa21.92■■□□□ 1.1
SDC1-204ENST00000429035 SETD1AO15047 1707 aaKnown RBP21.9■■□□□ 1.1
SDC1-204ENST00000429035 SHPRHQ149N8 1683 aa21.9■■□□□ 1.1
SDC1-204ENST00000429035 NALCNQ8IZF0 1738 aa21.89■■□□□ 1.1
SDC1-204ENST00000429035 METP08581 1390 aa21.89■■□□□ 1.1
SDC1-204ENST00000429035 POTEAQ6S8J7 498 aa21.89■■□□□ 1.09
SDC1-204ENST00000429035 HFM1A2PYH4 1435 aa21.89■■□□□ 1.09
SDC1-204ENST00000429035 DCCP43146 1447 aa21.88■■□□□ 1.09
SDC1-204ENST00000429035 MEX3CQ5U5Q3 659 aaKnown RBP21.87■■□□□ 1.09
SDC1-204ENST00000429035 LRP6O75581 1613 aa21.87■■□□□ 1.09
SDC1-204ENST00000429035 ASXL1Q8IXJ9 1541 aa21.86■■□□□ 1.09
SDC1-204ENST00000429035 BRINP3Q76B58 766 aa21.84■■□□□ 1.09
SDC1-204ENST00000429035 SLC4A1APQ9BWU0 796 aaKnown RBP21.84■■□□□ 1.09
SDC1-204ENST00000429035 PPLO60437 1756 aa21.84■■□□□ 1.09
SDC1-204ENST00000429035 NHSL1Q5SYE7 1610 aa21.84■■□□□ 1.09
SDC1-204ENST00000429035 MST1RQ04912 1400 aa21.83■■□□□ 1.09
SDC1-204ENST00000429035 ADGRL3Q9HAR2 1447 aa21.83■■□□□ 1.09
SDC1-204ENST00000429035 SPATA31A6Q5VVP1 1343 aa21.82■■□□□ 1.08
SDC1-204ENST00000429035 NUTM2BA6NNL0 878 aaPredicted RBP21.78■■□□□ 1.08
SDC1-204ENST00000429035 NUTM2EB1AL46 878 aaPredicted RBP21.78■■□□□ 1.08
SDC1-204ENST00000429035 NUTM2AQ8IVF1 878 aaPredicted RBP21.78■■□□□ 1.08
SDC1-204ENST00000429035 FOXD1Q16676 465 aa21.77■■□□□ 1.08
SDC1-204ENST00000429035 VGFO15240 615 aaPredicted RBP21.76■■□□□ 1.07
SDC1-204ENST00000429035 PTCH1Q13635 1447 aa21.76■■□□□ 1.07
SDC1-204ENST00000429035 DDX17Q92841 729 aaKnown RBP21.73■■□□□ 1.07
SDC1-204ENST00000429035 ROBO2Q9HCK4 1378 aa21.73■■□□□ 1.07
SDC1-204ENST00000429035 CCDC144AA2RUR9 1427 aa21.72■■□□□ 1.07
SDC1-204ENST00000429035 SETD5Q9C0A6 1442 aa21.72■■□□□ 1.07
SDC1-204ENST00000429035 ZNF772Q68DY9 489 aaPredicted RBP21.71■■□□□ 1.07
SDC1-204ENST00000429035 RPGRIP1LQ68CZ1 1315 aa21.71■■□□□ 1.07
SDC1-204ENST00000429035 IFT172Q9UG01 1749 aa21.7■■□□□ 1.06
SDC1-204ENST00000429035 C1orf167Q5SNV9 1468 aa21.7■■□□□ 1.06
SDC1-204ENST00000429035 RGL3Q3MIN7 710 aa21.67■■□□□ 1.06
SDC1-204ENST00000429035 PNPLA6Q8IY17 1366 aa21.66■■□□□ 1.06
SDC1-204ENST00000429035 LRRC59Q96AG4 307 aaKnown RBP21.66■■□□□ 1.06
SDC1-204ENST00000429035 AFF2P51816 1311 aa21.65■■□□□ 1.06
SDC1-204ENST00000429035 PRAG1Q86YV5 1406 aa21.64■■□□□ 1.06
SDC1-204ENST00000429035 LAMC1P11047 1609 aa21.63■■□□□ 1.05
SDC1-204ENST00000429035 ADGRF5Q8IZF2 1346 aa21.63■■□□□ 1.05
SDC1-204ENST00000429035 CDC42BPGQ6DT37 1551 aa21.63■■□□□ 1.05
SDC1-204ENST00000429035 C8orf37Q96NL8 207 aa21.63■■□□□ 1.05
SDC1-204ENST00000429035 KNDC1Q76NI1 1749 aa21.63■■□□□ 1.05
SDC1-204ENST00000429035 ORAI2Q96SN7 254 aa21.62■■□□□ 1.05
SDC1-204ENST00000429035 MPHOSPH9Q99550 1183 aa21.62■■□□□ 1.05
SDC1-204ENST00000429035 STK26Q9P289 416 aa21.61■■□□□ 1.05
SDC1-204ENST00000429035 RXRBP28702 533 aa21.6■■□□□ 1.05
SDC1-204ENST00000429035 SPATA31E1Q6ZUB1 1445 aa21.6■■□□□ 1.05
SDC1-204ENST00000429035 ADAMTS2O95450 1211 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms