RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 MYO5BQ9ULV0 1848 aa14.44□□□□□ -0.1
CD44-207ENST00000425428 TMEM131LA2VDJ0 1609 aa14.44□□□□□ -0.1
CD44-207ENST00000425428 CEP170BQ9Y4F5 1589 aaPredicted RBP14.44□□□□□ -0.1
CD44-207ENST00000425428 KDM2AQ9Y2K7 1162 aa14.43□□□□□ -0.1
CD44-207ENST00000425428 UBR1Q8IWV7 1749 aa14.43□□□□□ -0.1
CD44-207ENST00000425428 ZNF142P52746 1687 aaPredicted RBP14.43□□□□□ -0.1
CD44-207ENST00000425428 L3MBTL2Q969R5 705 aa14.42□□□□□ -0.1
CD44-207ENST00000425428 BCANQ96GW7 911 aa14.42□□□□□ -0.1
CD44-207ENST00000425428 SPATA31E1Q6ZUB1 1445 aa14.42□□□□□ -0.1
CD44-207ENST00000425428 PPLO60437 1756 aa14.39□□□□□ -0.11
CD44-207ENST00000425428 ANKLE2Q86XL3 938 aa14.38□□□□□ -0.11
CD44-207ENST00000425428 RIMS2Q9UQ26 1411 aa14.38□□□□□ -0.11
CD44-207ENST00000425428 TMEM2Q9UHN6 1383 aa14.37□□□□□ -0.11
CD44-207ENST00000425428 TXNDC2Q86VQ3 553 aa14.37□□□□□ -0.11
CD44-207ENST00000425428 IFT172Q9UG01 1749 aa14.36□□□□□ -0.11
CD44-207ENST00000425428 MYOM2P54296 1465 aa14.35□□□□□ -0.11
CD44-207ENST00000425428 NEXMIFQ5QGS0 1516 aa14.35□□□□□ -0.11
CD44-207ENST00000425428 NUTM2DQ5VT03 806 aaPredicted RBP14.34□□□□□ -0.11
CD44-207ENST00000425428 SLIT1O75093 1534 aa14.34□□□□□ -0.11
CD44-207ENST00000425428 ZFYVE9O95405 1425 aa14.34□□□□□ -0.11
CD44-207ENST00000425428 SCAF11Q99590 1463 aaKnown RBP14.32□□□□□ -0.12
CD44-207ENST00000425428 POLR1AO95602 1720 aaPredicted RBP14.31□□□□□ -0.12
CD44-207ENST00000425428 LAMC1P11047 1609 aa14.31□□□□□ -0.12
CD44-207ENST00000425428 ARHGAP23Q9P227 1491 aa14.31□□□□□ -0.12
CD44-207ENST00000425428 PRAG1Q86YV5 1406 aa14.3□□□□□ -0.12
CD44-207ENST00000425428 ADGRF5Q8IZF2 1346 aa14.29□□□□□ -0.12
CD44-207ENST00000425428 PLEKHG1Q9ULL1 1385 aa14.29□□□□□ -0.12
CD44-207ENST00000425428 KIAA1210Q9ULL0 1709 aa14.29□□□□□ -0.12
CD44-207ENST00000425428 ROCK2O75116 1388 aaKnown RBP14.29□□□□□ -0.12
CD44-207ENST00000425428 LMTK3Q96Q04 1460 aa14.28□□□□□ -0.12
CD44-207ENST00000425428 DMRT2Q9Y5R5 561 aa14.28□□□□□ -0.12
CD44-207ENST00000425428 PIK3C2GO75747 1445 aa14.27□□□□□ -0.13
CD44-207ENST00000425428 LTKP29376 864 aa14.27□□□□□ -0.13
CD44-207ENST00000425428 HSPA2P54652 639 aa14.27□□□□□ -0.13
CD44-207ENST00000425428 CARD11Q9BXL7 1154 aa14.27□□□□□ -0.13
CD44-207ENST00000425428 NRXN1Q9ULB1 1477 aa14.26□□□□□ -0.13
CD44-207ENST00000425428 C14orf93Q9H972 538 aaKnown RBP14.26□□□□□ -0.13
CD44-207ENST00000425428 TRPM1Q7Z4N2 1603 aa14.25□□□□□ -0.13
CD44-207ENST00000425428 NPHP4O75161 1426 aaPredicted RBP14.25□□□□□ -0.13
CD44-207ENST00000425428 DIP2AQ14689 1571 aa14.25□□□□□ -0.13
CD44-207ENST00000425428 NCKAP5LQ9HCH0 1330 aa14.25□□□□□ -0.13
CD44-207ENST00000425428 NBPF8Q3BBV2 869 aa14.24□□□□□ -0.13
CD44-207ENST00000425428 CFAP70Q5T0N1 1121 aa14.24□□□□□ -0.13
CD44-207ENST00000425428 RALGAPBQ86X10 1494 aa14.24□□□□□ -0.13
CD44-207ENST00000425428 IQGAP1P46940 1657 aa14.24□□□□□ -0.13
CD44-207ENST00000425428 SETBP1Q9Y6X0 1596 aa14.24□□□□□ -0.13
CD44-207ENST00000425428 EIF3AQ14152 1382 aaKnown RBP14.23□□□□□ -0.13
CD44-207ENST00000425428 TBX22Q9Y458 520 aa14.23□□□□□ -0.13
CD44-207ENST00000425428 ALKQ9UM73 1620 aa14.23□□□□□ -0.13
CD44-207ENST00000425428 MED14O60244 1454 aa14.22□□□□□ -0.13
CD44-207ENST00000425428 SLC26A8Q96RN1 970 aa14.22□□□□□ -0.13
CD44-207ENST00000425428 SLC24A1O60721 1099 aa14.21□□□□□ -0.13
CD44-207ENST00000425428 EIF4G2P78344 907 aaKnown RBP eCLIP14.21□□□□□ -0.13
CD44-207ENST00000425428 PIK3R4Q99570 1358 aa14.19□□□□□ -0.14
CD44-207ENST00000425428 NBPF1Q3BBV0 1214 aa14.18□□□□□ -0.14
CD44-207ENST00000425428 TMEM132EQ6IEE7 984 aa14.18□□□□□ -0.14
CD44-207ENST00000425428 STK26Q9P289 416 aa14.18□□□□□ -0.14
CD44-207ENST00000425428 POGKQ9P215 609 aa14.17□□□□□ -0.14
CD44-207ENST00000425428 NRXN3Q9Y4C0 1643 aa14.17□□□□□ -0.14
CD44-207ENST00000425428 GPRASP1Q5JY77 1395 aa14.17□□□□□ -0.14
CD44-207ENST00000425428 STRCQ7RTU9 1775 aa14.16□□□□□ -0.14
CD44-207ENST00000425428 ADAMTS13Q76LX8 1427 aa14.16□□□□□ -0.14
CD44-207ENST00000425428 YTHDC2Q9H6S0 1430 aaKnown RBP14.16□□□□□ -0.14
CD44-207ENST00000425428 TRAK1Q9UPV9 953 aa14.16□□□□□ -0.14
CD44-207ENST00000425428 USP47Q96K76 1375 aa14.15□□□□□ -0.14
CD44-207ENST00000425428 LRPPRCP42704 1394 aaKnown RBP14.15□□□□□ -0.14
CD44-207ENST00000425428 AMOTL2Q9Y2J4 779 aa14.14□□□□□ -0.15
CD44-207ENST00000425428 SETD1AO15047 1707 aaKnown RBP14.14□□□□□ -0.15
CD44-207ENST00000425428 CHD2O14647 1828 aaKnown RBP14.13□□□□□ -0.15
CD44-207ENST00000425428 METP08581 1390 aa14.13□□□□□ -0.15
CD44-207ENST00000425428 ABCC11Q96J66 1382 aa14.13□□□□□ -0.15
CD44-207ENST00000425428 ADGRB1O14514 1584 aa14.12□□□□□ -0.15
CD44-207ENST00000425428 KCNA6P17658 529 aa14.12□□□□□ -0.15
CD44-207ENST00000425428 KNDC1Q76NI1 1749 aa14.12□□□□□ -0.15
CD44-207ENST00000425428 SIRT1Q96EB6 747 aa14.11□□□□□ -0.15
CD44-207ENST00000425428 CENPJQ9HC77 1338 aaPredicted RBP14.11□□□□□ -0.15
CD44-207ENST00000425428 DLC1Q96QB1 1528 aa14.1□□□□□ -0.15
CD44-207ENST00000425428 HSPA5P11021 654 aaKnown RBP14.1□□□□□ -0.15
CD44-207ENST00000425428 CDCA8Q53HL2 280 aa14.1□□□□□ -0.15
CD44-207ENST00000425428 C14orf37Q86TY3 774 aa14.1□□□□□ -0.15
CD44-207ENST00000425428 ST20-MTHFSA0A0A6YYL1 179 aa14.09□□□□□ -0.15
CD44-207ENST00000425428 ARHGEF28Q8N1W1 1705 aaKnown RBP14.09□□□□□ -0.15
CD44-207ENST00000425428 TMF1P82094 1093 aa14.09□□□□□ -0.15
CD44-207ENST00000425428 PRAM1Q96QH2 718 aa14.09□□□□□ -0.15
CD44-207ENST00000425428 FAM135BQ49AJ0 1406 aa14.08□□□□□ -0.16
CD44-207ENST00000425428 PROSER2Q86WR7 435 aaPredicted RBP14.08□□□□□ -0.16
CD44-207ENST00000425428 ASXL1Q8IXJ9 1541 aa14.08□□□□□ -0.16
CD44-207ENST00000425428 SAFB2Q14151 953 aaKnown RBP eCLIP14.07□□□□□ -0.16
CD44-207ENST00000425428 CPS1P31327 1500 aa14.07□□□□□ -0.16
CD44-207ENST00000425428 TECPR2O15040 1411 aa14.07□□□□□ -0.16
CD44-207ENST00000425428 PTCH1Q13635 1447 aa14.07□□□□□ -0.16
CD44-207ENST00000425428 QRICH2Q9H0J4 1663 aa14.07□□□□□ -0.16
CD44-207ENST00000425428 NKTRP30414 1462 aaKnown RBP14.06□□□□□ -0.16
CD44-207ENST00000425428 EVC2Q86UK5 1308 aa14.06□□□□□ -0.16
CD44-207ENST00000425428 XRN1Q8IZH2 1706 aaKnown RBP14.06□□□□□ -0.16
CD44-207ENST00000425428 ZNF316A6NFI3 1004 aaPredicted RBP14.05□□□□□ -0.16
CD44-207ENST00000425428 NWD1Q149M9 1564 aa14.05□□□□□ -0.16
CD44-207ENST00000425428 PTPRUQ92729 1446 aa14.04□□□□□ -0.16
CD44-207ENST00000425428 WAPLQ7Z5K2 1190 aa14.04□□□□□ -0.16
CD44-207ENST00000425428 HIRIP3Q9BW71 556 aaPredicted RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms